RNA id: XM_026939376.2


Basic Information

Item Value
RNA id XM_026939376.2
length 5796
RNA type mRNA
GC content 0.42
exon number 3
gene id socs5b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21480699 ~ 21501499 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgtttcaTCAGCCTGATGGGGATGAACCGAGTGaaCAAGTCCAGATGGAGACTTTCTGTAGCCCCAGTTCCTGGACTCATTCTGCTGATGATTCATGGTCCTCGTCTCCAATCTATGGAGAAAGTGGGAAGGATGTGGAGCAACCTCAGAAGCAGATGTCAAACCCTCTTTAACACCAGTGGCTCAGAAGCAGGTGTATGGAATATGGACATGGATCGCATCCACTGTGTGGTGGACATAGGTGCACCTACTCATGGAGCACACACAGGTGAGTCCCAGGACGATCGGGGCTCTGGTCCTTCACAGGTTAACTTAGGAGGCGGGGGACATAGAGGCCACAACTGTGTGGCAGATAGTCCCCAATTTGTTGAGATCACAGTTGACAAAGAAAGTGAGGATACGCGAAGGGTCCCACTTGTACGTAGAGATTCTTATTCCCGGCATGCTCCTTGGGGAGGTAAGAAGAAACACTCTTGCTCCACTAAGACACAGAGCTCACTGGAAGCAGACAGGCGGACTGGACGTTCGAGAGGCGGTTTGAGCAGGCGGGAACGTTGCTATGGGTCCAGCTCCATTCAGGAAGTGGGTGATACTGGAGGAGGGGTCAGTGGGCAGAGTTTAAGCGTTCGCTCTGTACGGCAGAGGCTAAAGGACACTGTAGGCTTATGCTTGCCCCTGCCATCTCCCCGCCGCCCTCGGTCGGCCAAGAGCCTGGTTTCCTCTAAGCGCAAGATCCACATAACAGAGCTGATGCTGGAAACTTGCCCGTTCCCACCGGGCTCCGATCTGGCCAACAAGTGGCATCTCATCAAGCAGCACACAGCACCAGTCAGCCCGCATTCCTCCACTGCAATGCTGGACGCTTTTGACTCAACACATCCCTCTccagaggatgaggaggagaggcTCCGTGAACGACGTAGATTAAGTATAGAGGAAGGTGTTGACCCTCCTCCAAATGCAAGGATTCACACACTGGAGGCCACATCACAGAGAGCTACACTTTACAAACTGGGACCAAAGATGGCCCCCTGTTCTGGAGAAGGACATGGGGAGGTCAAAAGTTCGGGGGCTGGAACAGTGGGTTTGTCCGGGATAATGGCCCAAGTTGGGGTGACCATGGCAGCGCAATCTCAACCTGTTGACTGTGACTCAGAGGAGGACTCGACCACTCTGTGTCTACAGGCACGGAGGCCTAAGCAAAGACATGCCTCTGGAGATGGACATTCCTCCAGGCAGCCAGGACCCTGGAAGGTTCACACACAGATTGATTTTATCCATTGCTTGGTGCCTGATCTACTGGCCATCACAGCACTTCCCTGCTATTGGGGAGTGATGGATCGCTACCAGGCAGAGGCACTGTTGGATGGCCGACCAGAGGGCACCTTTCTACTACGTGACTCTGCCCAGGAGGactatttattttctgtcagtTTCCGCCGATACAATCGTTCTTTGCATGCACGCATTGAACAGTGGAACCACAATTTTAGCTTCGATGCGCACGACCCCTGTGTCTTCCATTCCTCAACAGTCACAGGTTTGTTGGAGCACTACAAAGACCCAAGCGCCTGTATGTTTTTTGAGCCATTGCTCACCGTCCCCCTACACAGGACTTTTCCATTCAGCCTGCAGCATCTGGCGCGTGCTGCCATCTGCAATCAGACCACCTATGATGGCATTGGTGCCCTACCACTGCCACCAGCTATGCAGGATTTCCTCAAGGAGTATCACTATAAACAGAAAGTACGTGTTCGCTGGCTAGAAAGAGAACCACCTTTCAAGGTCAAATAGGCCCTGGCTCTATGGCTGATGGAGGCAGGACCAATGAAGGCAAGAGATTCTGCCAATAGTGTTGGATCAGATCAACACCAGGCTTTAGGCATATGgcatatattcatttttttatagtaAATACTTGGAATACATGGTTGGTAATAATCAGTATGTGCTATCTGACAAGCATGTTTATTTGTTGATCAGGAATGAActgaaatggtttattcctCACTGCTCAGTCTCAGTGATGATAGCTAACGGATATGCTTCAGCCTGCCTACTAAAATGTCTGCATACCGCTGCATTCTCTCACCCATTTTACCTTATATCATCCCAGGACAATTACtatgaaaatggaaaacaacCTAGacaaatgctaaaatatatttaaaaagtgtgCTAACTCATAAATTTACATTCCTTTAAACTGATATTTAGACATATAGAACAAGATTCATTACATTAATCATGGCTAATTTACCAGCAACAAATTAAAATTACTATTAACCATATCTTCTAGACAGTCAGAAGAGGGGGAAATTACCAGTAAGAAATATTTCCTGTTATCCACCAGCTACACAGAGAGGACTTAGAAATACACAGatatgtgtgatgtgctgtATAATAGAGACTGCACTGTCAACTCTCAGCACAATCATCATATAAAATAGCCTGttgctgtgtttctttttgtgAGTGAGAAACAAACAGGCACCTTGACTTTTGAgcagtaaatgtttaaattgaaCACATGCAGTATCAGATCATGAGTGTTATTACTTCAACCCTACATGGGTTCATAAGTGTCTGTCACTGTCTGCTCCAAAACTGTAAACTGCTGGTCTGTTTTTAACACTGATCTACGTTGTCTAGTTagtccttttttaaaattgttaaatttGCCTGTGGTTTTATGGGGAAGAAATAGGTTATATTTGAGGCGTGTACCTTCACCTCACTATGACTGTCTTCACTATAGACACAGCATATAAAGATGCCATTTGTACACTTGTTATTAGTATTGATGGCCTGTTTTCTTACCATTTGTGGTTAGTTCCACTTACATTGCACTTTTACCCATTGTGGAGCATATTACTTCGGTATGCTTCCTGTCATTTCTGTGTGCACTAAAGAGTGAGTTTCATTTAACACTGTAACAAATTATGGCTTAGCCAACTCTTTTAATCATATAGCCTAAGGGCGCTTTCACAACTAATAGTCCGTTTGCTGAGTCCAAATTAGAGTGAATTTGATATTTTTGGGTTGGTTTCACAATGCACataaattaaatgaaccaaaaagcaaaaacactttGGCTGAGGAGTGTGTATGTCTGAAAAGTTACTTGTAatactctttcattcattgatcAGAAATACGCAAGTGCATGTACAAATCGCAAAATTCACTTGAGCACGGAGAACATGGAGCCGgagttaaataaacaattagttaattatataaataaagttttgtcTATGACATCCAGCATTAGCAGCTTgcatctgcaaaaaaaatgttacctGCAACCCATAATACACAGTATGTTTGGTTTTCTTCCTGCAGTCGGGTCAATTCAGGGTTTCTCACTGCAATGAAACCGTGCTAGAGTTCACTGCAAACGGACTGAGACTGCCTCATCACACGGTCTCGGACAGGTTGTTCTGGTCCAAACctgagtgtgattgctgtggtctcactctcactgcctAAATGAACCTCACAGAGGGGGAAAATACACCAGTGCTCGATTGAAACAGACTAAATGCTGCATTACGTGAAAGCATCCTTAGATTAAATCATTGGAAACGATGATGAATATTTTTgatatgacaaataaaggccAACATAAAATCAAGTATTCAGTTTAAATCGTAAGAGTTACTACTATATTAAAATGGAAAGCTGCTCAGGTCAACTCAGAGTTTATCTTATGCATAATACTATGCTACAAGAGAAGTGattgttttaatgtttgtgtttttgaggATCATCAACCAAAGGTGTGTTTGTGAGGTTTATCTGTATTTGAGAGGTTTCCATCacatctttttttaacattttaaccaaTGCAAACGTTTCAAAACTGGGTAAATGTGTTGTGAGCAATATGCTTTTCTTGTCTCCAGGAACCTGAttgatggattaaaaaaacaggataTAAGGCCTTTATATCCTCCCTATTTACACTTTCAATGACTGACTGCAGTGActccacaaaaaaaatctgttacaGTTTTGTTCTGTGTGCTAAACATTAGCAGGGCTGTAATTTAATAAGGTGTTGATGTGTTGCAAGTTAGTCCCTAAATTCTTAATGACAACCTGTGCCTTATTCCTCCCATCTCCTGCTTTCACACTCAGGTTTTGTACTTTAGAACGATGTGGCctgctcacacatacacatgggtCTTTCTGTGCTACCACTCAGCAAATGAGCCTCTCCTGGCAGAGTTACACCCTGCCCTGCCCTCCAGGCACTAATCACAGGCTAAATTTACTAACCTAGCCTCTAAATTTACCACCTGCTAAAAGGACCAGTCTGTGTTTCTTGATGGGCTCTGTGAAAATATAGAGTAGAGGgactttttttccttcctccccagtccaaccACATCCTCAGCATCACCTTCATTTCGGATATGTCGAGCTGAAAGCAGAAATGCTGTTGTTTGTGTAGTCTGCCTGGCTTCCACACTGTTTGGGCGCTATGCtaaagttagcattagcaagagGCTAACACAGGGCTCCATTGAAACATTTTGAGCACCCTGTTGTCTTGCTGTCAGGAGCAAGGTGGAGTTAAAAACCTCAATTAGCCATTATTTGGTTAAGGGTTGAGATGGTATTTTTAATGGCCAGTGGCCATTGTATATTTGGTTCACTCCTTGTCTTCATGCATTGTTAGCTGATTTTGAAATAGTCTAAGATGGTGAGCCATGGCAACAAggaataaagctttttttttttaagtcactttTAAAGTGTGCCTCGTAATTATGATCTAAAACTGTGGGGTTTTCTTTGTCAAGTGATGCATATAATCTGAAAAAAGCAGCTTCTCTGTATTGGGGAAACCGTTCACTTTGTTCCCTATGGGAAATTTGCACGTGTCAGACATAGCAGTGCCACATGTTGCCCATATGAACTGTAAAGCAGGCTCTGTGCcataattacagaaaaataaggGACGTTGGCTCTTTGCTTTGTTCACAGACATGCCTATATAATGTTCTATTTTGCCCTATAAAGTGAGGTCTCAATGTGTTTTTTGGTAAGAGATTTAAAGATTTATCAAGAAGTATAAATTTTATGATTGACTATGAACCTTCAGTCCTATGTAGAGGAGGAGCATGGTCTCTAGAAAGTCTCAGCCAACCTTTACCTTTGATCTTAGATTAACTTTAGCTTGGCTTTATATATATGTGCTAAGCTCTGACCTTACAGACTTTGGATTTGTACTCTTAGAATTAGTGTCAAGAGCgttgtgtaatatttttatgcaaacaCATTAACAAGATAATTATGTTTACATAATACTTCTCCCTAATATGCAATGAGTGTGATGTAACCGTGGTTCACTGTAGTGTCACTTTAATGCTCTACATGCACATTTGTTGCTGTATGAATGCAGGCGACATGCTGACAGGGCTTGACAATGATGGGCGCTAATGGTTGTCGTTGTGCATCACAGAATTCTTTATATgccctgaccaatcacaatatCCGTATCAAAAGACACAGGCTGGAAGAGCTCTCATCAGACAAACATAGACTAACTCTAATTATAATCCTccctttcttttgttctttctttctatcagCTGGATAAAATTGGAGTGTTTCAATGATGAAGTGTCTGTGTCTGACCTTTTTTGCTTTCCACATTCATGCTTTTGTCTTTTGcataatttcagtttttaaaagcCAATGAATACAATGCTTGTAGTTGTCATTATTGGTGCTTCGCGAATGCTTCATTGTCTTAATATTACCAATAAAATCATCAAGTGTA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59584 lncRNA upstream 130669 21313204 ~ 21350033 (+) False G50384
TU59582 lncRNA upstream 130669 21346165 ~ 21350033 (+) True G50384
TU59506 lncRNA upstream 266756 21210837 ~ 21213946 (+) True G50311
TU59504 lncRNA upstream 270587 21206394 ~ 21210115 (+) True G50310
TU59491 lncRNA upstream 282194 21198277 ~ 21198508 (+) True G50297
TU59746 lncRNA downstream 14783 21516282 ~ 21517755 (+) True G50528
XR_004577869.1 lncRNA downstream 23938 21525437 ~ 21526067 (+) True LOC117596875
TU59732 lncRNA downstream 65916 21567415 ~ 21574053 (+) True G50516
TU60015 lncRNA downstream 367325 21868824 ~ 21869028 (+) True G50772
TU60026 lncRNA downstream 373314 21874813 ~ 21875015 (+) True G50783
XM_026943202.2 mRNA upstream 296884 21180935 ~ 21183818 (+) True six3a
XM_026936906.2 mRNA upstream 361738 21025733 ~ 21118964 (+) True camkmt
XM_026936915.2 mRNA upstream 361738 21087941 ~ 21118964 (+) False camkmt
XM_026939903.2 mRNA upstream 470112 21002369 ~ 21010590 (+) True slc3a1
XM_034301821.1 mRNA upstream 484324 20986889 ~ 20996378 (+) True ppm1ba
XM_026934272.2 mRNA downstream 16287 21517786 ~ 21522535 (+) True prop1
XM_026934281.2 mRNA downstream 16287 21517786 ~ 21522535 (+) False prop1
XM_026934261.2 mRNA downstream 29772 21531271 ~ 21560099 (+) True ttc7a
XM_034302940.1 mRNA downstream 38640 21540139 ~ 21560099 (+) False ttc7a
XM_026932609.2 mRNA downstream 104886 21606385 ~ 21609100 (+) False epcam
trnae-cuc_10 other upstream 475183 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 905223 20574973 ~ 20575479 (+) True G49862
XR_004577569.1 other upstream 2124604 19341350 ~ 19356098 (+) False sfxn5a
TU60121 other downstream 519908 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 1282829 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 1612686 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 1952929 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 2195533 23697032 ~ 23697294 (+) True G51749

Expression Profile