RNA id: XM_026939377.2


Basic Information

Item Value
RNA id XM_026939377.2
length 2941
RNA type mRNA
GC content 0.49
exon number 13
gene id znf451
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27197909 ~ 27207245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTGCTGCAATTATCCTGTGCGCTCTTGCGAAGGATGACTTTTACTTTGAAAACtcgctgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgttctatcaGCACTAACGCCACCACAACTGTAAATCAAAGCGGatctGAAACTCAGGaactaacaaacacacacaggacaatgtCCACTAATGCAGGCACTGAAGACACAGAGGAAGATGATGTTGAATTTGTGTCTGAGGGTCCTCTTAGGCCTGTTCTGGAGTGCATCGACCTGCTGAGTGACGGAGAGGATGATGCAGGAGTGTGTACGATTGAGGAGCAGGTGGACAGACAGAAGGCCCAAGCAGCTTCAACCTTGGACAGACTGGCTCGCCAGGTAGCTGTGGAGAAACAGGAGCGGGCAGAAAAATGCAAAGCCTTTAAGGAGAAGATGATCTCGCAGCAAGCTCACGGCCGCCGTGAGTTGGCAGTGAGTCGATGCAGCAATGAGGACAGCAGTGATGCCAAACGCTGCGTGGACATCTGGCTGAAAATGCCAGGATTAAAGCCTGGTATCCTCAATACTGGCATGGGCTGGAGGCGCAGACCTGCTCCCAATCCCTCTTTAAGGTCCGCCCCTCAAACCtgccctgtcattaactgtggACGGGTATATGAAAATGTCCCTCTGCTTGAGGGTCACCTTAAAAGATTTGACCACTCTCCGTGTGACCCCACTATCACGCTTAAGGGCAGCCCTGCTTCTGTGTACGCATGTGTGGCCTGTGGTCATCATTTTGACACCAAAGAGCATTGGAGAATGCATCTGGACTTACAGTTGTCCTCCTCTAATGCTGGTGGTCATGACAGCACTCAGACCTGCCAGTTGATTGTTTGCTTCGCTTGCCCTGCCTGTTTCCTCCTCTTTAACATCAAAGATGAGTGTCTCCAGCACATGACAGCCAAAAACCACTTcactcagtctgtctgtctacacGAGATGAAGTCATCAGGGCCAATTCCAGTTCCACGATATGCAAAGAACCGACTAATTGCTTTATGCAAAGATATTGTATTTAGAGTCAGATGCACAGCTTGCTCAAAGGTGCTTACTTCACACATGGAAGCCAAGGCTCACTTCAaTGTGCACTGCAGGCAGGGCTGTGCTATTGCAGAAGCTGATCAAAGTGTGGCTGAGGTCATGAAGCAGCTGATAGTTTTGAGCCAGTGCTCTTCCTGCTCCAAAATCTTCCTACGCCAAAGACAGATAGAGGAACACAGAGAACAAACACAGCACGAGGTGGAGATGATCAGCAGCATGGAGCGAGCACTTCTAGTCTACAGCAACTACAGCGAAATCCGACACAGCCTCAAGGGTACCGCCAGTCACCCCTCTAAACATGCCAATGCAACCAGATCGTCATCGCACAGGgataaaagagacaaaaacgACTGTCTTTGGTCTCCTGCCAAGCGGCAGAGACTCTCCAGCTCGAGTCCTCAAGCTAAGTGTGATAGAGCCTCGAACCTCGCATGGTTCTGCGAGTGTGGCCTGCAGTTCATGGAGGAGGATCAAGCCAGCAAGCATCTTTTAGCAGCCAACCAAATCTTTCACAAGTGTGCCGTCTGTGGCAAGCTAATGGGTGAATTGTCCATCGCTCGTTTGCACATGAGCAGGTTCCATGGTGGCGCTCATCTGTCCAACTTCCTTTTCCACTGCAGACTGTGCAAATTAGACATGCCAAGGATTGAAGAGATCCTGTCTCATGTTGGTGTTTCCCATCAAGGGCACACCTActatgaagaaagagaaaaaacaaaagctgaaaGCTTGTCTTGTCCTTCTCAGAAACCGTCCACTAGGGTAGACAGCAGGCCAGCTGTTTCCAGTCCACATGAAGGCAGAAGCAAGGAACGGTGGCTGTGCCGAATGTGTGAGGACATATTTGACTCTGAAGCGGTGGTGCTCAAGCATTGCAGCGATGTGACCAGTCACAGCTTCCAGAGGTTCGCTTGTGGCCACTGTCCACAGAAGTTCTTCAAAGAGTCGACGCTCCGCCGGCACTGTGCTAATGAGCACAATAATCAGCTGCTCCTTCGCTACTTCTGTGGACTCTGCGACAGCATGCTGTATGACTCTGAGCAGGAGTTCCTAGAGCACTATGAAAACCTGCACAGCAAGGATTACTACCACTTGGACAAAATAGAGAATGGATCTCTTTCAGTCCCAGAGAGTTCTGATGAGGTACCGACAACAAGTAAAAGCCTTCCCCAACTCTGTCCATGCATGGGCTCCCAAAAAGCCAAAGAGGAAACCAAGTCCACCTTTACAAGATGCATGAAGCAGCTGGCCATAGAAGGCAAATGTGGATACGTCTGTCAGCAATGCGCAGCCAAGACAGGCTCTTACGCTGAgatgaaaacacacatgcacttgaAGCACGAGGCCCTGGGCAAGGACAAAAGCTTCGATGTCGTCTGTGAGTCATGTTCCGAGAGCCACAAGGACGTGCCCAGTTTCCACTCACATTACCATGCCCATCACTGCTTATTGGAACCGTGTATGTCCTCTCGATGTGGTGGATCAAGCAAGGACGACGCCCCGATCACGAAGATTCTGAACGCAGAGGAAATCTCTGCCGAAAAGAATGTTGAGGAGTTTCAGGATGTCAAGATAGCCATTGCTTCAACTACCACTTCCAAAGATAATCAGGAGGACATTGACGAGGACATAAAACTGGCTTTGGCTTTAAGTGCAGAAGAAGCGAAGAAGCCAACAGCATTTGACCAAGAGCTGGAAGAGGCTCTGAAGAGAAGCCTGGTGGACTTTTGATCAGAagctacacacatacacaccatttgtcctttattttcatgttgtttATGTAGCGACTGTAagctgttaaatatttttttgtgaatgtgttCTGAGgagtaaataaagaaaactaaGCCTAGGTGTTAACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63002 lncRNA upstream 75970 27111544 ~ 27121939 (+) True G53312
XR_004577887.1 lncRNA upstream 129729 27058878 ~ 27068180 (+) True LOC117596898
XR_003404272.2 lncRNA upstream 140911 27055764 ~ 27056998 (+) True LOC113542178
TU63006 lncRNA upstream 161101 27033849 ~ 27036808 (+) True G53316
TU63053 lncRNA upstream 179063 27017961 ~ 27018846 (+) True G53363
TU63030 lncRNA downstream 35710 27242955 ~ 27244158 (+) True G53340
XR_004577892.1 lncRNA downstream 53886 27261131 ~ 27273177 (+) True LOC117596902
TU63096 lncRNA downstream 129802 27337047 ~ 27341096 (+) True G53402
XR_004577721.1 lncRNA downstream 141665 27348910 ~ 27355673 (+) True LOC113541894
XR_003404268.2 lncRNA downstream 320620 27527865 ~ 27530466 (+) False LOC113542161
XM_026939387.2 mRNA upstream 264159 26925234 ~ 26933750 (+) True gfral
XM_026939484.2 mRNA upstream 274658 26905497 ~ 26923251 (+) True hcrtr2
XM_026939529.2 mRNA upstream 310830 26873228 ~ 26887079 (+) True fam83b
XM_026939159.2 mRNA upstream 332772 26830224 ~ 26865137 (+) True mlip
XM_026939381.2 mRNA downstream 83 27207328 ~ 27213122 (+) True bag2
XM_026939201.2 mRNA downstream 37706 27244951 ~ 27257879 (+) True si:ch73-52p7.1
XM_026939449.2 mRNA downstream 67271 27274516 ~ 27276329 (+) True olig3
XM_026939414.2 mRNA downstream 107288 27314533 ~ 27327655 (+) False tnfaip3
XM_026939413.2 mRNA downstream 110763 27318008 ~ 27327655 (+) True tnfaip3
TU63018 other upstream 205198 26985978 ~ 26992711 (+) True G53328
TU61306 other upstream 3140022 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 3392414 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 3500615 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 3742360 23454428 ~ 23455549 (+) True G51562
TU63410 other downstream 1240132 28447377 ~ 28448311 (+) True G53692
trnav-cac other downstream 1898199 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 1900597 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 2505013 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 2730303 29937548 ~ 29941181 (+) True G55091

Expression Profile