RNA id: XM_026939380.2


Basic Information

Item Value
RNA id XM_026939380.2
length 3804
RNA type mRNA
GC content 0.41
exon number 7
gene id rab23
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27213100 ~ 27223218 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGATTTTTCTAGAACTCGGGTGGGAAAGAAAGCACATCGGGTAGAGACAAGCGCCTCTTTCAGAATATTTACACCAGATGTAGATGGTTAGCAAGAGCAGTAAGCGTGTACAGTCTGATAACAGCAGATTAAATGATTTAACTGCGGAGATTTGCGACATTTTGCGACAGCGGGGCTCCGGCGGATCCATGAACGCGGCTTGCGCTTCGGTCCAAACTCAAGAATGTAGCGGGAAGAGAAACCGTTAACGGCGAGTGCAGGGAAGACTTCAAGTGAGACGAGTATAATCCGAGTGAGCACAAGCCCGCGAGTTTTCCAGCCAAGCTTGCAGCCATGTTGGAAGAGGATATGGAGGTTGCCATCAAGGTGGTGGTCGTGGGCAACGGTGCTGTAGGAAAGTCGAGTATGATCCAGAGATACTGCAAGGGCATCTTCACCAAGGACTACAAGAAGACCATTGGTGTTGACTTCCTGGAAAGGCAaatagtAGTAAACGATGAGGACGTGCGGTTGATGTTGTGGGACACGGCAGGTCAGGAGGAGTTTGATGCAATCACTAAGGCTTATTACCGAGGTGCCCAGGCCTGTGTACTCGTCTTCTCCACCACGGACAGAGAGTCGTTCGAGGCCATCAGCAGCTGGAGGGAGAAAGTGGAGATGGAAGTTGGAGACATTCCTACTGTTCTGGTGCAGAACAAAATCGACCTCCTGGATGACACGGTGATAAAAAATGAGGAAGCAGAGGGTCTTGCCAAGAAGCTCAAGTTGAGATTTTATCGGGCCTCGGTGAAAGAGGATCTCAATGTCAATGAAGtttttaaatatctaGCAGAAAAATACCTGCAACGACTGAAGCAACAGACGGCTGAAGATCCTGAAGTCGTTCACACATCAAGCAATAAAATTGGCGTATTCAACACTGGCAGTGGCAACCAGCCGAACCAGAACTCCAGCGATCTCAATGGCCGTGAGGTCATCAACCTGCGACCGAACAAGCAGAGAACTAAGAAGAATAAAATCCCCTTCGGTAGCTGCAGACTTCTCTAGAACGTCTCCTTGTATGCGTTATGCCTTGTTTGCCTTGTAGGTCCGAGTGACATGCATCATCGTCAACACTAACCAGAGTCCGTGAAAGGCTACGTCTCAGCGTAAACACTCTCAGTGTGGAGGTGGCGTTTAAATTGAGGTCAGCTTTTTCACACATTGTGGTTTCGTAACATGTCTCTGATTCCTGTGGATGAGTCTTATGTCACGTGATCGTAGAAGGAAGGCTGAAGGTATTGAATTGTGGGAATACGTGTTCCCTGTTGGCTAGAAAGCAACGTTGGTTTGTGACACTCCGGTACGTAGGTTTTAATCAGGCCTTTGGGATGATGATTAAGCAGCTTGTCTTGCTTTATCACAGCCAAACTATCAAAGTagatttgcagtttttttttttacaatcaacAAGGGGAAGTAACTTTTTCAGAACGATAGTCTCTAAAACCCTTTTTGAAATTGTTATAAGCGTCTTATCTCAGACCCCTTGATTTGGATTACAAGCTTATTTTTCAGATTGATATTAAATGGAAGGAATTTTCAGTAGATCCATATTACATAGAAAGTAAGATTGTGTGTTACTTTATACGGTGTAGAGCAgggtaactaacacacacactaacgctAACAAGATTCCTTATAACATACATCATTTTTACTCTAAGCATTTGTGCATTGGACTGTTTTCTCTTTTGTGCAATATGTGTGTGGAGGTGTATGGTTTGGTAACACATCtttccattaaaataatttgaagtTGATGAtaagtactaaaaaaaaagggtattTTTGTAAGCGAAAACATCGTCTCAAAACCATAGCATTAACACAGtgccaaaaaatgtttttaaactgtATGTACTTGTAAGAACTGTAAATATTGTTAGTAAAATTTTAACTTCGGAGAATGTGACCacactgtttaatattttagtgTGATCAGATTGAAACATACTAGCAGAtaaacatgcagcttgtcatgacCAACACTAGAGTTCACTAATGCACAGCGGAAGCACAGGATCTGTGCAGACTTAAATATTGATGTGATATAATGTTCAGTTCTGCTGCTTGTAAACACTAACAGTACAGAATATTCCGCGTGAACAGTGGAATACACTGTATATCTCTGTTAAAGCCTCATTTGAATTGTTTTTGATGGTTGAATGAACATTAGTATGCTGGGTAAAATTGGTGACACATGTCATTTTCAGTACATTCACACTCCTGGGTTTAAAGTTCTCCTAAATCAGCTAGGGCCccattaattgtttaaaaaataaataaataaatcctcccagttttttttttttttttttttaaacttctgaaCATTCTACTCATAGGATAAATTTGTTGGTAAAACTGACTTTAAATTCCTAGATTACAAGCATAAGAAAAAACATTGCTGACCCTCTGGCAACACTTCACAGAACCCAGTTTGAGAACCATGGCTCTAGACGATTTGCCGCTTCAGACATTACACTTAGAACAATCACAGCAAGCTTCTTTGCACAATTCTGATTTTTATGCCCAAAATAGATGTCTTACCTTGAAGGTTCAGAACCACAAGTGACCCATAATCTGTCTGTAATGAGACTACACCTGTCCCTTCAAACCCCGTGTTCACACATCGATTGCTCGGTTTCTGTAGATTCCTTCCTGTTTTGCGATTTCCCCATCCTTCCACTAAATGTAGTCACCACTGTTTGTCCTCTATAGTTGTTTTGCTGCACTGCCGACAGTGGATGATGACAGCAACAGTGATACATGCATTAAAGTGTGTTGGGGGAAAAAGCCACATGAATTCCACTCGGATTGTTCGCTTTCATGTCACATGGTCATTTATCCAATTGGATGTATCCAATCTGGGACCACATATGAAAGTGGCTCTAGTCTGATTTGTGATCAGATCAGATTCCTGTGTCCACacagtcctgaaaaaaaaatcagatctgtCGCATTAAGACAGGAAAAACCTGAATTGTGTTCACAATGTGAACATAGCCCATGTGTTGTGTTGATTTGGGTTTTCCCAAGAAGAACAGCTGTGGCATTCAGTTTGACGTGTATAAAGTCTTTTCTCTGAATTGGACCTTCGGCATGTTCAAACAGTGTTCTTGTATAACTAAAAATCGGGAGACTCTtctacatttgttcatttggtagattcttttatccaaagtaatgaatgaacaaatgagaCAGAATGCAATATAAAGCTGGagttgagcagttgagggttaaaggttTTGCTTGCTTGCAGAAGCTTCTGAAATCTCCAGCCCGAGTTCtgagggctttttttttcctgcttcaaaGCACAGTAATTACTGGAAGATATAATCAGCACTCAGATAACATTCATTTGTAGTTAGGACTCGATTCTACTGCATCATTTCAGATTAATCCTTGATCAACCTCTGAAGTAATGAGGTAATCACCCATTTCAGCTCAGCATACATGAACATGTATAAAACACTCAATCGgtctggccttttttttttttcttcttacatTTACGCACAACATGCATGCCTTACATTCGACtcatgtatgaatgtgtatcgATGGTACTTGGCCACAATGACCAGCGATATGTTTACAGTTGTGATCAGCTTTATATGACCTTGCtctctttgtattttgtaattctATATAATCTAATCATTAACGCTCTGTGGAGATAAAGATTCATGCCTACATTATGATGGATTCAAGGCACtttatttgtcaaaaaaaaaaaaaaaaaaaaataccag

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06234 RAB23; Ras-related protein Rab-23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577888.1 lncRNA downstream 11202 27197359 ~ 27201898 (-) True LOC117596899
TU63476 lncRNA downstream 27024 27104811 ~ 27186076 (-) False dst
TU63549 lncRNA downstream 186062 27026815 ~ 27027038 (-) True G53809
TU63501 lncRNA downstream 345223 26867658 ~ 26867877 (-) True G53761
TU62918 lncRNA downstream 413492 26798728 ~ 26799608 (-) True G53250
TU63467 lncRNA upstream 3127 27226345 ~ 27253952 (-) True G53732
XR_004577875.1 lncRNA upstream 82656 27305874 ~ 27314351 (-) True LOC117596885
TU63597 lncRNA upstream 94870 27318088 ~ 27319622 (-) True G53851
TU63617 lncRNA upstream 144143 27367361 ~ 27368060 (-) True G53862
TU63459 lncRNA upstream 307358 27530576 ~ 27803450 (-) False G53729
XM_034303094.1 mRNA downstream 17145 27067429 ~ 27195955 (-) False dst
XM_034303079.1 mRNA downstream 17148 27057897 ~ 27195952 (-) False dst
XM_034303093.1 mRNA downstream 17150 27057897 ~ 27195950 (-) False dst
XM_034303087.1 mRNA downstream 17150 27057897 ~ 27195950 (-) False dst
XM_034303085.1 mRNA downstream 17150 27057897 ~ 27195950 (-) False dst
XM_026939395.2 mRNA upstream 5796 27229014 ~ 27246364 (-) True ifngr1l
XM_026939469.2 mRNA upstream 113830 27337048 ~ 27341117 (-) True perp
XM_026939075.2 mRNA upstream 131784 27355002 ~ 27360666 (-) True wdr92
XM_026939077.2 mRNA upstream 143100 27366318 ~ 27380631 (-) True ppp3r1a
XM_026939134.1 mRNA upstream 159086 27382304 ~ 27385511 (-) True cnrip1b
XR_003404274.1 other downstream 1302981 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 2477213 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2561253 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2561253 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 3173000 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 314558 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 1210002 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 1978714 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2456193 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 2888613 30111831 ~ 30122655 (-) True G55209

Expression Profile