RNA id: XM_026939381.2


Basic Information

Item Value
RNA id XM_026939381.2
length 3076
RNA type mRNA
GC content 0.39
exon number 3
gene id bag2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27207328 ~ 27213122 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aattctgagttgaattattttttagtttaaactgcTCTCATTAACATGTTGGTCTGTTAACACTTTGGTGTTACtcacaatgctgtttgactaCATGCAGTTACTGgggccagtgggatttagcccttgcttaaTCTCTACCTAAAACTagcaatgcagcagcactttagtcctttaatcTGTCCGCCTCATCTTTTCTAATCAGTACCATGGTGCTGATCATCCCATAGATCGCTAACTAACTGAAATTATGGAAATTTGAGTTTGCTGTCTTCACTATTTCTAGTTTGGACTTATCATtggaaaatgaatgagtgaaaaaaagtatttttttgctcttttgttttaagGAGCTAACAGAGAAACCTGACCCTTATATGTgagatatattatattaatactgtatatacttccTGTGTACCTGTGCTAGCAATGTCCTGCTGTGACATCAGTGCAGCAACCAAGTGCTAACTTGTCacagaaatgatgaaaatacagcactaaACAACACATTAGCACAAGAACAACTAAAAACACTATACATATTTGAGTAGAAACATATTTAATCCGTTTCAGGGTGGACCTTTAACTACCTCACACACTACAATGATTCCTCTGAAGGGTCTTAGTAAGAATCCCACCCTTTTTCCTTGTAACACTCCTCCGGTCttgaggagtgtgtggagtgtgagttTACCTCTGGGAAGTTCCAGCCCATGTTTGGAGATGTTCCTCAGGGCCACTGTCCATCAAGGAAACCGCTAGAAAGCACTGGAGTGAATATGAGGAGAGAGGAAATACCACTGCACGTCGTCCATTAAGAGATctgcgctctctctcacacacacacagtcggaCACAGAGTGCTATCATGGCTCAGGCTAAAATCAGCGCCAGAGTCAACACTGACACCGCTAAAGGCAAATTCAGCAGGTCTGTGTCGATGGCAGACCGCTCCATGCGCTTACTGGAGAGTCTTGATGAAATTGAAATGAGggtggaggcACTAAGGGAAGCGGCCACAGCTATGGAACACGAGAGGGAAAGCTTACTCGAAATGATCCAGTCCATTCAGAACAGCCAGGAAATGCGAACCATTTGTGATGGAGAGCGAGAAGAACTCACTCTGACTGCTAATAGACTCATGGGCCGGACACTGACAGTGACCGTCTCTGTAGACACCATCCGAAACCCACAGCAGGAAGATGCGCTGAGGACAGCTACGGCCATCATCGATGAGATCGCTGCTAAAGTGCTCGACGACATGGAGAGCGCGAGGAAGAAGCTGCAGGCTCTTCACGCCGCCTGCCTCACAGAGGCATCGTTTGTTCCCATTGACCAGAAATTCCAGAGCATTGTGATCAGCTGCGCACTGGAAGACCAGAAGAAAATCAAGCGGCGACTCGAGACACTCATACGGAACATGGACAATGCAGAGAAAACCATTAAGATCATGGATAACCAGAAAGTGGATGAGTCCAAAAGTGCCAATGGCAAATGATGACATGGGGTTTGGGCAGCACCACCTTTGTGGAGCGCCTAACTAGCATGTGCCTTCATTAATCACTGGGATCATCACAACTTTTCATTTCTCACCATGTTTGTATGCTACACTTATATAGTCTTTTGgacttttaattaaattatcaGTAACGGAAAcacactaaatattttatttgatgcaTTCTAAAGGGCAACTCGATTAAAATGAGAGAACTGAAAAATGTCAGTTAATTTAAATAGTAAGTCAAGGTAACAGAATGTATCATACACTTAAAAACGGTCTTTAAAACTTGGATAAGTTGTGATACGTCACGAAGATGTACCACAATTCCAATTTTTTctacttaaatatatttttggctATTTCTATTAATTGTGTTCTATTAACGAAACCCACAAAAGTGTTGAAACATCTTTGAGATTAACAAGAAaataggctactagtttgtgtACATTTTGAGTCTTATGCACATCTGTAGTTGAGATTAATTATGAactttccagtgttttccagggCAGAATgggtttttaaaacaaaacaaaacacaacacacctggcttaggccacgcccacttcaggcTTTAATCCgattacagatacagatagcaTTATTTTGCTAATACACCCTGATGTATAGGATATATTTTGAGCTGCACATGGTATGCACACACTGAGGGCTCAAATTAGACCACATCTACCATCATGCTCGAGTGGAATTCTTCATAAGGCTGTTAAGATTGTCATATGGTATAGAACAATGCTTGTCACTGTTCTGCTTGTCACTAAGGAACAAATTGCTCAAAGTGAAGGAGTGTTCGAGAATCCTTTGTAAATGGAAATAGGATCGCGTCTGAGTGCTAAGTGCCGTCAACTAGCCACTGATCATACAAATATAACACTTGAAAGTTTTTCTAGTGTCTAATATCGCAGCATTCACCTTAAATCTGTTACAGTTTCAGCTTAATGATCCTGCAAAATTTGAATGCATTTCCAGAAAAAGTTGATTTGACATAATCGTTTTTTTTCCATGCTAGTTTCATGCTATGTTTTTgaagttcattttaaataattaataatgcacAGTGTGACAATGTAGTTCGTTCCCATCATGAATACAGCTTAGACAGGTTTAAACAGTACAGGAAAAAAGTTTTCAAGCAAGCGTGCtcaaacattaatatataaactatCTTGTTAAATGGAGACGCACGGTTAAAATAGattctttatttgtaaaatgacTACCATCTACCAGAGCAAAGACGTAAATGTACAAAGTGACACCAGATAAGACACGgttgaggaataaaaaaaaaatgttatcacaaaacttttttcaaataacatttctgtgaaatatttatagACCAGTGGGTGCAGGAATGCTCGCCAACATTTACTTGAAATATAAAGTTTACATTTAATAGAAAGGCATCATaagtaaaagagaaaaatgtagaGTCACTATTAGCAGTTGTAACAAATGGAATATTTTGATATACTCGATATTTTCATGTATGCTCAAGGTTGTGCTCTGTGATAAAGTGacctggtattttttttttttttttt

Function

GO:

id name namespace
GO:0051087 chaperone binding molecular_function

KEGG:

id description
K09556 BAG2; BCL2-associated athanogene 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63002 lncRNA upstream 85389 27111544 ~ 27121939 (+) True G53312
XR_004577887.1 lncRNA upstream 139148 27058878 ~ 27068180 (+) True LOC117596898
XR_003404272.2 lncRNA upstream 150330 27055764 ~ 27056998 (+) True LOC113542178
TU63006 lncRNA upstream 170520 27033849 ~ 27036808 (+) True G53316
TU63053 lncRNA upstream 188482 27017961 ~ 27018846 (+) True G53363
TU63030 lncRNA downstream 29833 27242955 ~ 27244158 (+) True G53340
XR_004577892.1 lncRNA downstream 48009 27261131 ~ 27273177 (+) True LOC117596902
TU63096 lncRNA downstream 123925 27337047 ~ 27341096 (+) True G53402
XR_004577721.1 lncRNA downstream 135788 27348910 ~ 27355673 (+) True LOC113541894
XR_003404268.2 lncRNA downstream 314743 27527865 ~ 27530466 (+) False LOC113542161
XM_034303102.1 mRNA upstream 83 27197909 ~ 27207245 (+) False znf451
XM_026939377.2 mRNA upstream 83 27197909 ~ 27207245 (+) False znf451
XM_026939378.2 mRNA upstream 958 27197909 ~ 27206370 (+) False znf451
XM_026939387.2 mRNA upstream 273578 26925234 ~ 26933750 (+) True gfral
XM_026939484.2 mRNA upstream 284077 26905497 ~ 26923251 (+) True hcrtr2
XM_026939201.2 mRNA downstream 31829 27244951 ~ 27257879 (+) True si:ch73-52p7.1
XM_026939449.2 mRNA downstream 61394 27274516 ~ 27276329 (+) True olig3
XM_026939414.2 mRNA downstream 101411 27314533 ~ 27327655 (+) False tnfaip3
XM_026939413.2 mRNA downstream 104886 27318008 ~ 27327655 (+) True tnfaip3
XM_026939044.2 mRNA downstream 129799 27342921 ~ 27347922 (+) True psmb1
XR_003404257.2 other upstream 83 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 933 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 958 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 214617 26985978 ~ 26992711 (+) True G53328
TU61306 other upstream 3149441 24055241 ~ 24057887 (+) True LOC113540163
TU63410 other downstream 1234255 28447377 ~ 28448311 (+) True G53692
trnav-cac other downstream 1892322 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 1894720 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 2499136 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 2724426 29937548 ~ 29941181 (+) True G55091

Expression Profile