RNA id: XM_026939386.2


Basic Information

Item Value
RNA id XM_026939386.2
length 2405
RNA type mRNA
GC content 0.46
exon number 7
gene id bmp5
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26959104 ~ 26969207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCTAGAGGTGAACACGAATCCTGTGTGTGGGACGGACTACTCGGTctcagctctgttttttttttctccccccccacacacacacagatgtgtccGCTTGTAGCGCTGGAGCTCAGCGGCTTTCAGCAGCGACTCCTCACTCCTGCGCCTCGGAGCTCTCTGTCGTGGCCGCCTCGCGCTTTCTCCAGCCCTTCTCGGAGCTCGAACTACACAAACCTGAAGGAGCAATCTGTAAGTTGGAGTTCTTCTTTTTCCTTACCACTGTGGGTAACAGGTAGGCCATCTAGAAAGTTTTGAATAAAAAGCTCCCAAGTTTACGCGGTGAATCAGAAGGAACAAGCGTGATGTGAACCATCAGACTACAAAGAACTGCGACCTTTTTGACTTTTTGGACACATCAGATGGACACAAGGTGCAGTTTTCACTAGCctattatttattgcttttagtAGTATTATGAATGGTACACGCACTGTCATGGAGCTCATGAACAGCCCGAGACCTGCGTGGTGAAGAAACAGCATCATAAGCTCGCAGCTATGAGGCTCTTAGCGCTGTGCGCCGGAGCGGCCTTCGCGCTCCTGTGGAGCTGCCTCGGCTTCTTCCAGAGCGTCCAGTGCGCTTTAGGGGACAACCATGTCCACTCGAGCTTCATTTACAGACGCCTGAGAAACCACGAGCGCCGAGAAATCCAGCGGGAGATTCTCTCCATCCTGGGTTTGCCCCATCGCCCGAAACCCTTCTCTCCGGCAAAGCAGGCATCCTCGGCACCTCTCTTCATGCTCGATCTGTACAACGCCATGGCGACCGAGGAAGCGGTGGAGGACGCGCTACTCGAGGACACAGGCAAAGCGATCAGTATGAACTCTCTGGGAAATTCGCGTAAAAGTCAGCACAGCGCTCCATATGGATATTCTCGCGCGCCTGTGGCCTGGACAAGTCAGAGTCCACCTCTGGCTACTTCCCACGACGCAAACTTTCTGAACGATGCCGACATGGTCATGAGCTTTGTCAATCTGGtggagagagacagggattTTTCCCACCAGAGGAGACACTATAAAGAGTTCCGTTTTGACCTAACTCAAATTCCGGATGGAGAGGCTGTAACAGCAGCAGAGTTTCGCATCTATAAAGATCACAGTCATGGGAGATATGAAAACGTCACACTAAAGGTCTCCATATACCAGGTGATCAAGGAATATCAAAACAGGGATGCAGAAACATTTTTGCTCGATTCAAAGAAAATCCGTGCCTCAGATGGAGGATGGCTGGTGTTTGACATCACAGCCACCAGTAACCACTGGGTGCTTAACCCGCAGCAGAACATGGGCCTTCAGCTGTGTGTAGAGACCATGGACGGTCGAAGCATCAACATGAAATCCGCTGGGATCATTGGCAGGAGTGGGCCGCAATCCAAGCAGCCTTTTCTTGTGGCATTTTTCAAAGCCAGCGAAGTGTTGCTGCGCTCTGTAAGAGCCACAGGGGGAAAGAGGAAGAATCCTACTAGAAACAAAGGCAGAAGTCAACCGAAAACCTCACAGGCTTCCAGGATTGGAGATCAAAACATCAGCGAACAGAAGCAGGCCTGCAAGAAGCATGAGCTTTATGTCAGCTTCCGCGAATTAGGATGGCAGGACTGGATAATTGCACCTGAAGGGTATGCGGCATTTTACTGTGATGGAGAATGCTCATTCCCGCTCAATGCACATATGAATGCAACAAATCATGCAATTGTGCAAACTCTGGTCCATCTCATGTTTCCTGATAATGTGCCAAAGCCTTGCTGTGCACCAACCAAGCTGAACGCAATATCTGTGCTATACTTTGATGACAGCTCAAATGTAATTCTGAAAAAATACCGCAATATGGTAGTCAGGTCTTGTGGGTGCCACTGAAGTCCATGTATGTTTGAGGGCTTGTTTTTTGAACACACATCAGCCCTTGTTTTGTGAACACACATCAGTGGGGATTATACATTAAGTTCATTTTTAATTGGAGACTCTAGAGTAAGCTGTTTTTTGTAAACCTGCCACTTCTATAATATtgctggaataaaacacatacagataGATAGTTTTGAGATTTACAGTGATGTACAGTGTTATGTATATATTAGCTCATGAATGTGCTTATTTATTTggctttattttgaaataatagaAGACTCATTGAACATTTACCACttgcagaaaataaatgctcTTTCCTGAAAACCTGTTTGAGGCCAGTCAAGTAAGCAGCAGCTATTATTGCCCCTTTGATCATGAACAATATTTCTGGTGATTTTAAATGCCGATGTTTTGATTTCCTTCAGACTTTATATGCATTTACAttagtaattttaataatatatatatattttttgcaaaatattgcatttattgtATTAGGACaatgttc

Function

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04663 BMP5; bone morphogenetic protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63501 lncRNA downstream 91227 26867658 ~ 26867877 (-) True G53761
TU62918 lncRNA downstream 159496 26798728 ~ 26799608 (-) True G53250
TU62919 lncRNA downstream 159586 26798679 ~ 26799518 (-) False G53250
XR_003404260.2 lncRNA downstream 217585 26738543 ~ 26741519 (-) True LOC113542110
TU62883 lncRNA downstream 238444 26720076 ~ 26720660 (-) True G53216
TU63549 lncRNA upstream 57608 27026815 ~ 27027038 (-) True G53809
TU63476 lncRNA upstream 135604 27104811 ~ 27186076 (-) False dst
XR_004577888.1 lncRNA upstream 228152 27197359 ~ 27201898 (-) True LOC117596899
TU63467 lncRNA upstream 257138 27226345 ~ 27253952 (-) True G53732
XR_004577875.1 lncRNA upstream 336667 27305874 ~ 27314351 (-) True LOC117596885
XM_026939068.2 mRNA downstream 233666 26720819 ~ 26725438 (-) True klhl31
XM_026939535.2 mRNA downstream 239514 26708519 ~ 26719590 (-) True gclc
XM_026939221.2 mRNA downstream 252349 26687125 ~ 26706755 (-) True elovl5
XM_026939345.2 mRNA downstream 291086 26640928 ~ 26668018 (-) False arfgef3
XM_026939344.2 mRNA downstream 291435 26639549 ~ 26667669 (-) True arfgef3
XM_026939531.2 mRNA upstream 6518 26975725 ~ 27025885 (-) False col21a1
XM_026939530.2 mRNA upstream 6518 26975725 ~ 27025885 (-) True col21a1
XM_026939532.2 mRNA upstream 6518 26975725 ~ 27025884 (-) False col21a1
XM_026939533.2 mRNA upstream 8790 26977997 ~ 27025890 (-) False col21a1
XM_026939534.2 mRNA upstream 64717 27033924 ~ 27055678 (-) True zmp:0000000760
XR_003404274.1 other downstream 1048985 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 2223217 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2307257 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2307257 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 2919004 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 568569 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 1464013 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 2232725 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2710204 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 3142624 30111831 ~ 30122655 (-) True G55209

Expression Profile