RNA id: XR_004577854.1


Basic Information

Item Value
RNA id XR_004577854.1
length 1231
RNA type misc_RNA
GC content 0.53
exon number 6
gene id ndufaf1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32374336 ~ 32389144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTTTAATGCGACGCACCGCAATGGCGGCTCACAGCAAGATGAATGTCAGAATGTTTCTTTACAGTAATACTTGTTCTGACGTTAGAAATagcttttgcttttaatttgcaCTGAGTCGTAGCTTGTAATGTTTGTGATTCTACACAACAGTGTCACAATTCGCTTTTTTCTTGCTCTTATTTCCGGAGACATTTGGATGCTTTGAGCTCAGAGGTTATGGCTCTGTCAGGGAGGATGCTGAAAACCTCCAGCATCTTCCAGAGGCGTCTCTTTGAGCCGCACATCGCTGGTCCTGTCTCCCTGAGCATCAGGACTGTGTATGAGCGGGACTACCGCAGACCAGGCCAGGCTCCGGACACGCGATGGCCCTGGCAGAAGATCAACTTCGACTTCTCAAAGGGTGTTGACGGGATAAAGAAGCACTTCGGGCTCCTGAAGGACGAGTTCCTGGAGCGCTGGTCGGGGCCCGAGGGCCGGCCGCTGGAGGTGCACATGCTGGAGCAGACGCGCATGCTGTGGGAGTTCCGTGGCCCCGAGTCGCTCAGTCAGTGGGTGGTCACCTCTGACCGGGAGATCGGCGGCCGGAGTGAGGCGTACATCAAGCTGGGGAGGAATAACTCCACCTGCATGTTGTACGGCTCTCTGTGCTCGGCTCCACCTCAGGACGGAGAGACACGCTACAGCGGATACTGCACCATGCGCTCCAAACAGCCTCGGGCTTCATTCGACAGGAAGAAGCACTTTGATTGGTCGAGCTTCAACACTCTGTATTTGCGTATCCGTGGAGACGGCAGGCCGTGGATGGTGAACATCTCCGCCGAGACCTACTTCTCTCACCAGAGAGACGACATGTACAGCTACTTCCTGTACACTCGAGGGGGTCCGTACTGGCAGGACGTTAAGATCCCCTTTTCTAAATTCTTCCTCTCAAGCCGAGGGAGAGTACAAGACGACCAGCACGCCCTCTGGCTGGACAAGgTGAACACTATCGGCTTCACGCTGGGAGATAAAGCTGATGGACCCTTTCAGTTAGAGATCGACTTCATCGCTGTGTGTAACGATCGCGCTCACACAGAGGAGTTTGCGTATGAACTGTACAAGAGGAACCCAGAGGTGTAACGGACAGAAACTGTGACCTTGAGCTTGATGGAAAAATGTTGGGTGTTCAATTTCATGAACTTataatgccacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66733 lncRNA downstream 64391 32300306 ~ 32309955 (-) True G56670
TU66757 lncRNA downstream 130056 32243923 ~ 32244290 (-) True G56693
TU66738 lncRNA downstream 166339 32207489 ~ 32208007 (-) True G56675
TU66675 lncRNA downstream 301848 32070763 ~ 32072498 (-) True G56614
TU66731 lncRNA upstream 10771 32399915 ~ 32400310 (-) True G56668
TU66735 lncRNA upstream 25765 32414909 ~ 32415460 (-) True G56672
TU66925 lncRNA upstream 255548 32644692 ~ 32647936 (-) True G56827
TU66932 lncRNA upstream 274737 32663881 ~ 32664343 (-) True G56834
TU66958 lncRNA upstream 324585 32713729 ~ 32713933 (-) True G56860
XM_034302917.1 mRNA downstream 6556 32366310 ~ 32367790 (-) True LOC117596868
XM_026939505.2 mRNA downstream 19846 32346755 ~ 32354500 (-) True tmem39b
XM_034301663.1 mRNA downstream 28619 32339234 ~ 32345727 (-) False ccdc28b
XM_026939064.2 mRNA downstream 28619 32339234 ~ 32345727 (-) True ccdc28b
XM_026939422.2 mRNA downstream 37869 32331393 ~ 32336477 (-) True iqcc
XM_026939177.2 mRNA upstream 89157 32478301 ~ 32483014 (-) True si:ch211-10a23.2
XM_026939096.2 mRNA upstream 120380 32509524 ~ 32516634 (-) True rdh12
XM_026939383.2 mRNA upstream 136260 32525404 ~ 32535619 (-) True arg2
XM_026939074.2 mRNA upstream 265972 32655116 ~ 32661612 (-) False slc66a3
XM_034303020.1 mRNA upstream 280362 32669506 ~ 32710211 (-) False sobpa
TU66783 other downstream 19864 32350801 ~ 32354482 (-) False tmem39b
XR_004577843.1 other downstream 84739 32239601 ~ 32289607 (-) False brf1a
TU66291 other downstream 536111 31837182 ~ 31838235 (-) True G56303
TU66257 other downstream 544862 31827814 ~ 31829484 (-) True G56272
TU66090 other downstream 773661 31563555 ~ 31600685 (-) True G56150
TU66930 other upstream 264692 32653836 ~ 32661562 (-) True slc66a3
TU67278 other upstream 326683 32715827 ~ 32728741 (-) True G57124
TU67373 other upstream 630134 33019278 ~ 33099572 (-) True G57210
TU67383 other upstream 951078 33340222 ~ 33344809 (-) False slc38a6
TU67416 other upstream 1034525 33423669 ~ 33429769 (-) False lrrc9

Expression Profile