RNA id: XM_026939407.2


Basic Information

Item Value
RNA id XM_026939407.2
length 1563
RNA type mRNA
GC content 0.45
exon number 8
gene id ube2d3
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20485920 ~ 20496715 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTCACCCTAGAGGACATCTTATCACCTGcgaaatattaattttaactaACTGACAAAAGCCGGattatttgttatattaaatattctacCGGACTGTTGTTTACAACGCCTAGTTTTGATTTTGCTGTATTGAAGTTGAGTAACTTCAGctaaatacatgaataaaagcTTGATACTTCGCTAAATTTCAGCTTAGCTTTCAGCACAGGCTACATACATACTGAGACTGTTATTATGTTTCCTACCTGTATTCGGACAAATCCCGCCTAACGCGCTGGCTCACTCCTCTATTGGTGGGCCACCTTTGAGTGCGAACCAGTAACCAATAGTAGGGCAAAAGCCGGGGCGGTACGAGCCAATCACAGCGGAGGAAGTGCAACTTCTCGGAATACGGGTGGGGAAAGCAATGCAGTAAGACTCGGTAAGCATAGCAACAGTCCGCCAAAAGTTGAGCGCTATACTGTAGCTACGACCTATCCGGTGCGGCGGGTTTGGAGGGGAGCTCCGCTAAACCACGACCTGCAGTGGTAACATGGCGCTTAAACGAATTCAGAAGGAACTGACTGATTTGGCCCGTGATCCTCCAGCACAGTGTTCAGCAGGTCCAGTTGGGGACGATGtgttCCATTGGCAGGCTACAATCATGGGTCCTAACGAGAGTCCCTATCAGGGTGGTGTTTTCTTCCTGACTATACACTTCCCAACAGACTACCCCTTCAAACCTCCAAAGGTTGCATTCACCACAAGAATCTACCACCCAAATATTAACAGTAATGGCAGCATCTGTCTGGATATCCTCAGGTCCCAGTGGTCTCCTGCACTTACAATTTCTAAAGTTCTTTTGTCCATCTGCTCACTCTTATGTGATCCAAACCCAGATGATCCTCTCGTACCAGAGATTGCACGAATCTacaaaacagacacagaaaaGTATAATAAAATGGCAAGAGAATGGACAGAGAAATACGCCATGTTGTAGGTACAACAGAATAGCACGGGAATGGACACAGAAATATGCCATGTGATGTTGGCAGGACACATTTACAAACTGTTGTTTATGCTCTTGTGTTTGGTCACTGTCTTAAGGCAATTTCATCACATATGTCTCTTATGGAGAAACGGTCCGCAGTTGTCTGCTCAAACAAGACTATAACGACCTGCAGGAGCTGCCATTTTCAAATATCATGTGGACCTCATTCATCAAGTGGAGTCTTTTCTCTGCTTCCTGCTTCTTTGCCTTTTGGTCAGTATGTCAGTTACTTACTCTGACCTCTTGCCTCATGCAATCTTTGTAAGAGCACAGTGCTGGCCTGCTCAGGCAGAGGACTGTAGGCTGTGCTACTGCTTCTTCCGGGCTGCACTGCATGTCATCACAGAGTGAAAGTTCAGTTGTGGCACAGCACTGGGATTATCAGATGccttcttttgttttgctcatTCTGCAAATCTGAGATCCTTTCTTGGCCCAAGCTTTAACATCTGTAGCAATGAAATACACCCCAATCAACTAGCATAAATGTCCTGCTTTTAATTTTTCCCTTAAATAAAGTTACATAACTCA

Function

GO:

id name namespace
GO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:0035666 TRIF-dependent toll-like receptor signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0034138 toll-like receptor 3 signaling pathway biological_process
GO:0034142 toll-like receptor 4 signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58889 lncRNA upstream 93335 20392367 ~ 20392587 (+) False pprc1
TU58738 lncRNA upstream 294778 20155901 ~ 20191144 (+) True G49643
TU58721 lncRNA upstream 302729 20121048 ~ 20183193 (+) True G49630
TU58541 lncRNA upstream 486236 19972587 ~ 19999686 (+) True G49518
TU58539 lncRNA upstream 542847 19933042 ~ 19943075 (+) True G49517
TU59001 lncRNA downstream 27101 20523816 ~ 20524049 (+) True G49853
TU59014 lncRNA downstream 84086 20580801 ~ 20585500 (+) True G49863
TU59015 lncRNA downstream 88889 20585604 ~ 20589230 (+) True G49864
TU59007 lncRNA downstream 123223 20619938 ~ 20716297 (+) True G49857
TU59323 lncRNA downstream 453855 20950570 ~ 20950991 (+) True G50140
XM_026942449.2 mRNA upstream 7176 20468623 ~ 20478746 (+) True zmp:0000000662
XM_026932302.2 mRNA upstream 64551 20415321 ~ 20421371 (+) True arl3a
XM_026933461.2 mRNA upstream 72210 20407934 ~ 20413712 (+) True npm3
XM_026932427.2 mRNA upstream 78852 20395757 ~ 20407070 (+) True oga
XM_026939396.2 mRNA downstream 878 20497593 ~ 20506431 (+) True manba
XM_026942537.2 mRNA downstream 10502 20507217 ~ 20515636 (+) True slc39a8
XM_034302977.1 mRNA downstream 11096 20507811 ~ 20515636 (+) False slc39a8
XM_026942556.2 mRNA downstream 20793 20517508 ~ 20521274 (+) False LOC113543984
XM_026942568.2 mRNA downstream 20821 20517536 ~ 20519608 (+) False LOC113543984
XR_003403773.2 other upstream 1129824 19341350 ~ 19356098 (+) True sfxn5a
TU59013 other downstream 78258 20574973 ~ 20575479 (+) True G49862
trnae-cuc_10 other downstream 508735 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 1524692 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 2287613 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2617470 23114185 ~ 23115039 (+) True LOC113545030

Expression Profile