RNA id: XM_026939412.2


Basic Information

Item Value
RNA id XM_026939412.2
length 2417
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC113542099
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26113645 ~ 26202559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtatATCATGGAAACGCGTGTGAACCactccaatctggcaaccctgcctgcctgcctgtagatcattagcattagcattagggGAGATTTCAGAAGAGTGACATGGCTACTGGTGGCTCTTTCAGTATAGTGGAGTACTTTGGGGGTGACGATGGCCACCGTTGTGGTTACTGTAAAAATGCAGTGGGCAATTTTTCACATGGTATGTGGGCCCATTCAATGACTGTTCAGGACTACCAAGACCTCATTGACCGGGGATGGAGAAGAAGTGGCAAGTATGTTTACAAGCCTGTCATGAACAAGACCTGCTGTCCACAGTACACTATCAGGTGCCATGCCTTAAACTTTCATCCTTCAAAGACGCATAAGAAGATCTTGAAGAAAATGACAAAGTTTCTGTCGAAAGGGGAGGTGCCAGCAGGCCAGCGTGATGCTGACTGTGACGGTGAGCGGATGGACTCCATGTTTGAAGAAGGAGGGGAAGTTCCTCCGGTGGATCCTGTGAAAATCCAGCACTCTCAGGTGGAGCGTCCCATTATTCCCAGCCGCCCTGAGAAAGACAACGATTCCAAACCATCAACATCAGAGACTCCAAGAGAGGAAACGGTGTCATCAGCAGCAGGGAAGAGCCCACGCCTCATGCCTAAACCAGGAGTGGGAGcggaccctagcaaacctccgTGTCGCAAAGCCAAGGATATCCGGAAAGAGCGACGACTACAAAAGGAGCAACAGAAGCAGCAAGATGGTGGAGGCACTTTAACAAACCTGAAGCCTGCTCCAGCAACTCCAGCATCTGGTCAACCCAAACCTTTAGAAGAATTCATCACCGACTCGCTGCCTGATGACCCTCTTCATCGTTTAGAGGTGAGGCTAGTGCGCTCCATGCCACCCAGTCCACAGTTCAAAGCTTCTTTCGACGCCTCTTACCAAGTGTACAAACTCTACCAGATGGTTATTCACCACGACCCACCTGATAAGCCTAGTGAGAGCCAGTTTAAGAGGTTCCTGTGTGACTCACCACTAGAGGCAGAGACGGCTCCTGATGGGCCTGATATGGGCTACGGCTCCTTCCACCAGCAGTACTGGCTAGACGGACGTATCATAGCTGTGGGTGTCATCGACATCCTGCCTAACTGCGTCTCCTCAGTCTACCTCTACTACCACCCGGACTTTGCCTTCCTCTCGCTGGGCTCCTACTCTGCTCTCAGAGAGATTGCCTTCACGAGGCAATTGCAGAAGCAGTCACCCAAGCTCTGCTACTACTACCTGGGCTTTTACATCCATTCTTGCCCCAAGATGCGCTACAAGgGTCAGTACCAGCCGTCAGACCTTCTGTGCCCAGAGACGTACACGTGGGTGGCCATAGAGAAATGCGTCCCCCGCCTTGACGCCTCAGCCTACGCCCGCCTCAACGAAGACACCCGAGCAGgtgatgcTAGTGCACTTAAAGACTTGGGCCGGGTTCTGGTGCTGCACAAGAGGACGGTCATGCCTTACGCCGCCTACTCGCGGAAAAAGAAAGGCTTCAGCGATGAGAAAGAGGTGGAGCAGTATGCAAGCCTGGTGGGCCAGACGTGTGCGGAGAAGATTCTCCTCTACCGATCTTAGCTCATTGTCTTATTCAGCTCACTCACAAGTGTCTGCATTCTGTCTAATGTACACCTGTTAGTCTAATGtttattttgccttttattCCCCATCCTGCATCCATTTTTTCTGTGTCCAAATTCTTTGCTTCTTTCAGTGTGTTGTCGTAAAGCTTCATGTCTTGTTCAGTACATGGAGGAGGAATTGTAGAGCTATAAATCCTCTGTCTATCCCACTTGCTcacaagtgttttatatttaagcCTTCACGATATTGTTGCCCACATTCACGAACTTATACCCGTGTAATCGACCTCACGCTAatacagaacacacagtgtagaattattttattgtaggATTCATTTTTATCGATCTAAATGTCAAACGAGGCTGTGACGTGCTTAGCTGTGTGTGCTTAACTAGGATCTGCGTTCATTCAAATAGATTTGTACCAATGCAAGGTCTGTGACTGGTACAATGCTAACAGTGTGTACACCATGAGGCAGCCTTGAGCTACCAAAGATGCAGAAAACTGAAGTGTGAaggaagaagtgtgtgtgtttttttttcttccagaacTGCTAGAATGATTACATAGGCTGTAGTATgtaagactaaaaaaaaatcaacgtCCCGTGTGCCATACTGGAGGACTGATATCAGAAACGAATTTAAAATTTCCAGACGTGAAATGTACAAGAACAACAGCATCCTATGGAGCAGCTAATCTCTGTCTGTACTGTCATGTAAATTATAGCTTCAGTGCTTTTCTTTTGTATTCTGCTCTTCAAACACATGAATAAAAATCATCATTTATGCTTGGAA

Function

GO:

id name namespace
GO:0016598 protein arginylation biological_process
GO:0004057 arginyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62296 lncRNA upstream 232371 25888551 ~ 25888782 (+) True G52683
TU62264 lncRNA upstream 256912 25850740 ~ 25864241 (+) False bcl2l11
TU62263 lncRNA upstream 256912 25851855 ~ 25864241 (+) False bcl2l11
TU62265 lncRNA upstream 256912 25851855 ~ 25864241 (+) True bcl2l11
TU62246 lncRNA upstream 274254 25844235 ~ 25846899 (+) False acoxl
TU62521 lncRNA downstream 18754 26221313 ~ 26221544 (+) True G52873
TU62506 lncRNA downstream 54083 26256642 ~ 26344302 (+) True G52858
TU62532 lncRNA downstream 160880 26363439 ~ 26363733 (+) True G52884
TU62533 lncRNA downstream 163633 26366192 ~ 26369260 (+) True G52885
TU62740 lncRNA downstream 325848 26528407 ~ 26533502 (+) True G53080
XM_026939419.2 mRNA upstream 57241 26016620 ~ 26063912 (+) True slc29a1a
XM_034302732.1 mRNA downstream 47580 26250139 ~ 26288902 (+) False fgfr2
XM_034302731.1 mRNA downstream 47581 26250140 ~ 26288902 (+) False fgfr2
XM_034302729.1 mRNA downstream 47582 26250141 ~ 26288902 (+) True fgfr2
XM_034302730.1 mRNA downstream 47582 26250141 ~ 26288902 (+) False fgfr2
XM_034302733.1 mRNA downstream 47583 26250142 ~ 26288902 (+) False fgfr2
TU61306 other upstream 2063266 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 2315658 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 2423859 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 2665604 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 3006114 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 783419 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 995350 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 995350 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 995350 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 2244818 28447377 ~ 28448311 (+) True G53692

Expression Profile