RNA id: XM_026939415.2


Basic Information

Item Value
RNA id XM_026939415.2
length 2232
RNA type mRNA
GC content 0.42
exon number 7
gene id chp1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30163347 ~ 30175120 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGATTCGCTTTGGTACAGCGGTGCACTGTATCTAAAATCTCTTCGGGTGCTGGTTAGTTAGCGAAATTAGCTCTCTTTGGCGTATGTGTGAAAGGTTTGTCATACAAGTACCAACCTGAGAGTGGGCATAGAAGTATCTGGATAATCTTTAGCGTGGATATACAGTGAAAATACATCacgttttgtgtgttttttgaaaGTTAGTGAGCTAATCAGTCGCGGTGTGAAACCGTTAGCTTAGCCGGCTAAGCAGGACGGTTGAGTTagcaaaaagaaattaaaggtgataagagagaaagaaagaaagagagagagaaaaagaaagaaagaaagaagagacatGGGCTCCAGAGCATCGTCTCTACTCCGAGAGGAGGATATCGAGGAAATTAAAAAGGAAACTGGATTCTCGCACAGTCAGATCACTCGCCTCTACAGCCGATTCCACAGCCTGGACAAGGGCGAGAACGGCGctctcagCCGTGAAGACTTCCAGAGAATTCCCGAGCTGGCCATCAACCCTCTTGGTGATCGGATAATTAATGCCTTCTTCTCAGAGGGAGAGGATCAGGTGAACTTTAGAGGCTTCATGAGGACGCTGGCACATTTCCGGCCCGTCGAAGACAACGAGAAGAACAAAGACCCAAACATCGAGCCGCTCAACAGCAGGAACAACAAACTGCTCTTTGCCTTCCGTCTCTATGACTTGGACCGAGATGATAAAATCTCTCGAGATGAGCTACTCCAGgtGCTGCGGATGATGGTGGGTGTGAATATTTCTGACGAGCAGTTGGGCAGCATCGCAGACCGGACCATCCAGGAGGCCGATACCAACGGAGACATGTGCATCTCCTTCAGCGAGTTCATCAAGGTGCTGGAGAAAGTTGATGTTGAGCAGAAGATGAGCATTCGCTTCTTGCACTGAAGCACCACTCGCTTCCCGCTGGACCGCACTCTAATTCAAGGCCGTTCGTGCCGTGTGGGACCCGCCGCTGGTCTGTCGCATTTCGGCCTCCTCGGCTCCGATTACTCATCTTATGGGCATTGTCGCTTTGTGTTATTATTCGTTTCTTCTGTCAAATCATCGCTCGCAATCACACTCGCATTGTTGTTTGGATCAAAGGGAATATTCATGTGCCTTCAGTTGTTGACCCGGTCAGCCCGGCTGTACTCTTATTTATTCTGGACAATTTCTGGTTTGAACCCAGCTCTCTTATTGTTCCGTTCAACATAGTGGGCGTAGTGGTGGAGTAGTTTGAACAGTTATCGTGGGTTATCGTATTCAGAGCCAAATCTGTTGCTTttaatgtgttctgtctgtCTTAATCAACTTAACACTTACTGCAAACAGACCTTCAACTTGACACTTTGCTTTactgtcttttatttttctttaatattacGTGAGAGCTCAGGATATATAATTGTGAGACATTTGCACatatcccaaaaaaaaaaagttttcataacCTTATTTCTGGATATATGGGAGACGAGATCAGTAAAGGAAGTATTGCGATAAAGGCTTATTGTGGAGTCTTTTCTCTCCGGATTTGACTGAACATTTCCTGAAAGCATTCCGAAGCTTTCAGGTTtacttttttgttggtttttaagACAACATGATACATATGTTAGAGCTGAGTGATATGACTGCAAcctgatataaataaatgaataaatattttcctcctcaggtTATAATCTTGTCTGTCAGCTCTAATTAGCAATGTTGGTAATTTAGTTAAACATTAGCATTGACCACAGAGTTTGATGGCCTTCTGATTCACACAGTCATATAAACTGCTTTCTCACTTTCGAGAGAAATCGAGGTTCAGTGGGCTGCACTGTCCAAGCCTTCACATAAAACAACactgttaatgtgttatttcaCATATTAACTGCCTCAAGTGATCAAATGTTGTTCATTTATATTGCTTACACTACCTGCTTTAGCAACGATAAACTCACATCACTGCTGATTCTGAAAATTCTCTTTGTTGTACATTACTTCAGCAGGGCTTGCTGCTTCTCTCTTCATGTATACGTCTCTGTAATGTTATGGATAGTGGCTGATGATGATTGTGGGTTTGTAACTTTAAGAGATGGACTCAATCAATTTCAATTTTACTACtcagtgggattttttttagttatatatTCTGTCATACAGATATTatggggaaagaaagaaagtgtgattttggtcaaataaaaataagtgcCATACTG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17610 CHP, CHP1; calcineurin B homologous protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65077 lncRNA downstream 377 30162751 ~ 30162970 (-) True G55220
TU65018 lncRNA downstream 113647 30048430 ~ 30049700 (-) False cdh23
TU64883 lncRNA downstream 286587 29875406 ~ 29876760 (-) False LOC113542120
XR_003404261.2 lncRNA downstream 286633 29873060 ~ 29876714 (-) False LOC113542120
TU65051 lncRNA upstream 23205 30198325 ~ 30200157 (-) False runx3
TU65128 lncRNA upstream 164357 30339477 ~ 30339850 (-) True G55270
TU65129 lncRNA upstream 165288 30340408 ~ 30344538 (-) False rsrp1
TU65226 lncRNA upstream 172050 30347170 ~ 30387537 (-) True G55349
TU65232 lncRNA upstream 180451 30355571 ~ 30414469 (-) True G55351
XM_034302618.1 mRNA downstream 2123 30155087 ~ 30161224 (-) False khdrbs1a
XM_026939471.2 mRNA downstream 14423 30140946 ~ 30148924 (-) True LOC113542130
XM_026939036.2 mRNA downstream 53827 29879295 ~ 30109520 (-) False cdh23
XM_026939142.2 mRNA upstream 25033 30200153 ~ 30253456 (-) True runx3
XM_034303117.1 mRNA upstream 165279 30340399 ~ 30343584 (-) False rsrp1
XM_034303167.1 mRNA upstream 170001 30345121 ~ 30352294 (-) False eif2ak2
XM_034303168.1 mRNA upstream 170001 30345121 ~ 30352293 (-) False eif2ak2
XM_034303166.1 mRNA upstream 170001 30345121 ~ 30352293 (-) False eif2ak2
XR_004577811.1 other downstream 2124 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other downstream 2124 30153487 ~ 30161223 (-) False khdrbs1a
TU65057 other downstream 40525 30112034 ~ 30122822 (-) False G55209
TU65059 other downstream 40692 30111831 ~ 30122655 (-) True G55209
TU65060 other downstream 40692 30112322 ~ 30122655 (-) False G55209
TU65130 other upstream 165288 30340408 ~ 30344538 (-) True rsrp1
trnag-gcc_2 other upstream 580286 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 676817 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_4 other upstream 685316 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577789.1 other upstream 1371240 31546360 ~ 31548633 (-) False LOC113541990

Expression Profile