RNA id: XM_034303055.1


Basic Information

Item Value
RNA id XM_034303055.1
length 2733
RNA type mRNA
GC content 0.42
exon number 13
gene id slc29a1a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26016620 ~ 26063912 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCAGCTTGAGCTTAATGCTTTTGAATCTGAACCGTAAACATTCCACCAGTGAGAAATAATGACCGCCATTAATTCACCACGAGACAGGTATAATGCTGTATGGATTATATTTTTCATCCTGGGCCTGGGAACTCTTCTGCCATGGAACTTCTTCATGACTGCCAGCATGTACTTCACCAGCCGTCTCAGAGATCCTCCTATAAATGCAGATGGTCAGAACCTGACCCTCAATGGCACACTGGTAGAAGGTGACACGCGCAGCGTCCTGGAATCGATATTCAACAACGTGATGACCTTGTGTGCCATGGTGCCACTGCTCATCTTCACCTGCCttaattccttcattcatcAGAGGATTCCTCAGAAATGGAGGATCTCCGGCAGCCTCTCTGTGATCCTGCTGGTGTTTCTGATCACCGCAGTGTTGGTCAAGGTGGACATGGCCCCTCTGCCCTTtttcaccttcaccatgatCAAAATCATCTGCATCAACTCTTTTGGTGCGATTCTGCAGGGGAGTCTCTTTGGGCTGGCAGGAATGCTTCCAGCTTCTTATACTGCTCCCATCATGAGCGGCCAGGGATTCGCTGGAACATTCGCAGCCTTTTCCATGATCTGTGCACTCGCCAGTGGCTCAGCGCTGCAGGACAGTGCTTTTGGCTACTTCATCACTGCCTGTGTTGTAATTGTTCTGGCCATCATTTCTTACTTTGCCCTGCCCAAAATGGAATTTTTCAAGTATTACGCAGACTCCAGTAGCCCCAAACCTTGCAGCGAAGAGGAAAACAATATGGACCTGTTGAACAAAGaaaacccAGGGGAGAAGCCCGCAGTAGTGAGTCTGGCTGATGAGGAGACCACACATACCATCTCTGTGTTTGCCATCTTTCAAAAGATCAGGGTGATGGCCCTTTCAGTGTGCTTTGTCTTCACCATCACTATTGGAATATTCCCTGCTGTGACTGTGGATGTGAAGTCCTTTGCGGCTGAAGATGGTGTTTGGAAAAACTACTTCATTCCCGTGTTCTGCTTCTTGCTCTTTAACTTGATGGACTGGGCTGGAAGAAGCTTAATTGCAAAGTGCACATGGCCTGGGAAAGACAGCAAATGGCTGCCTGTGCTGGTGATACTTCGTGTCATATTCATCCCCCTCTTCATCCTGTGTAACGTGCAACCCAGAAACAACCTGCCCGTTTTTTTCGCTCATGACGCCTGGTACATCGTTTTCATGATCATCTTCTCATTCAGCAACGGCTACCTAGCCAGCCTGTGCATGTGCTTCGGACCCAAGAAAGTGGCCCAGCATGAAGCAGAAACAGCTGGGGCCATCATGGCCTTCTTCCTGTCCTTGGGTCTGGCGCTGGGAGCTGCGCTGTCCTTTGGCATCAGGGCAATGATCTAGAACCTTTGACTCAGTACATACCGCCTTCTAGGGGGAAGGACAGAAACATTGCCAAACTGCTCAACACGTTGCCATTTGGAAACACACGGATTTAGTATTTAATCGGGCTTCCGAGTtcaacagaactgctgctctgCCGAAACAGAAAATAACACTTATTCAGAAGGAATGTGTTCCATGTGTTCCATGGAAACCTGTTCTTTAGAAACCTGGAGCAGACACTGTGGACGGGGTTGGTGTTGGAAAGAACAATTTACCACAAACTGTTCGATCAAAAGCCATTGtgtaagccaaaaaaaaaaaaaagcattttattagcttacgtttttttttccttctttctttctgggTGTTCAGAGTTAGTTATTTTCTTCAGTTTGAAGTAGTAACAGAATGATCATAGAATCATTTGTTTATTGAAtgtgttttgttgtattttaggctcatagctttttatttaacattatttttaagaaGTGCTAGTACTAATATAGAACctcgctaaaaaaaaaaaaaaaaagggcagtagttagttacactacactgtaacaGGGCTTGTGTTTGTGCTGATGAAGTAACAGGCACCATGTTTATTTCTCCTGTAACTGCATCTGgtcacaattatttttaatggaatatatttttaatattttttttttacgtgtaTTATCATGTTGGTTTAGTTAAGAAGAgcataaagctttaaaggtgtactgcaacttttttttaatcatcagcaATGTGTGGGGAAAATACTGAGGATGTACAGTATTTGCTCTGAACAAATACTCAGGTCAGGTTAAATCTCACTTATTATACAAGgcagtaaataaaattttaagagatgggactttttttttttggaaacatttttGGTTCTGCATTACCAACCTAGTCAGTGtaccacaataaaaaaaaagtgccagcAGTAAAAAGAAAGTGCAACCTGAATAACTTTTTTTGGTAAGACCTTCTGTCTGCCAGACCTTTGTTAGTATGCCAAGATTGTAATTTTAAATCCCAGTTATGTGAgatgtatttaaaaacatttattatcgAGGTTTATAGGTTCCATTTGGAGTTAGTTTTgtgtaaacaggttttctgttcttctctTGTACTCCTGTATGTGTGGTGTGCACTCCCGCTCTATAGATGTGATGGATAAAGATTAAGGTTAAACAGTCAGTGTGCTCATTAAATAGCTGCCAGTTCTCATGTTTCATTACAGCAGACCTTTATTTTCATCATACCAGTGATTCAGCACACTGCACTGCCTTGGTTGTGGTGTCCTCAATAAAACCTGAGCGGAATTCTCTGCTAAattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62296 lncRNA upstream 147739 25888551 ~ 25888782 (+) True G52683
TU62264 lncRNA upstream 172280 25850740 ~ 25864241 (+) False bcl2l11
TU62263 lncRNA upstream 172280 25851855 ~ 25864241 (+) False bcl2l11
TU62265 lncRNA upstream 172280 25851855 ~ 25864241 (+) True bcl2l11
TU62246 lncRNA upstream 189622 25844235 ~ 25846899 (+) False acoxl
TU62521 lncRNA downstream 157401 26221313 ~ 26221544 (+) True G52873
TU62506 lncRNA downstream 192730 26256642 ~ 26344302 (+) True G52858
TU62532 lncRNA downstream 299527 26363439 ~ 26363733 (+) True G52884
TU62533 lncRNA downstream 302280 26366192 ~ 26369260 (+) True G52885
TU62740 lncRNA downstream 464495 26528407 ~ 26533502 (+) True G53080
XM_026939464.2 mRNA upstream 49377 25982599 ~ 25987144 (+) True vip
XM_034303014.1 mRNA upstream 172175 25850600 ~ 25864346 (+) False bcl2l11
XM_034303013.1 mRNA upstream 172175 25851849 ~ 25864346 (+) False bcl2l11
XM_034303061.1 mRNA upstream 189618 25801972 ~ 25846903 (+) True acoxl
XM_026939444.2 mRNA upstream 290631 25730464 ~ 25745890 (+) False tmem87b
XM_026939410.2 mRNA downstream 49733 26113645 ~ 26202559 (+) True LOC113542099
XM_026939408.2 mRNA downstream 57233 26121145 ~ 26202559 (+) False LOC113542099
XM_026939409.2 mRNA downstream 57234 26121146 ~ 26202559 (+) False LOC113542099
XM_026939412.2 mRNA downstream 57241 26121153 ~ 26202559 (+) False LOC113542099
XM_026939411.2 mRNA downstream 57241 26121153 ~ 26202559 (+) False LOC113542099
TU61306 other upstream 1978634 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 2231026 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 2339227 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 2580972 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 2921482 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 922066 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 1133997 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 1133997 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 1133997 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 2383465 28447377 ~ 28448311 (+) True G53692

Expression Profile