RNA id: XM_026939447.2


Basic Information

Item Value
RNA id XM_026939447.2
length 2279
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC113542112
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33286801 ~ 33293343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACCTTTACCTTTACAGTTAGATTTACACTCTGCAGGTCTGCACTACACGCTGAatctgcactgctgtcagagccgCTCTTCATGATAATCATGTGACAAGAATGTGAAGTGGAATGGATATTAAACAGCACTCACTCAGAGgccatggtgatgatgatgatgatgatgaagaatcCTGTTTCTTCCTTCCTGCAGAAcaacaattacatttctttGAAACTGTCAACATCAATCAACCAGTACAGGTTAAAGGAGATAAATGATCCAAATGCTTTAGAAATCATGATTTTACACAGgcTGCTGATTCACATGCTCAGGAGAGAAACAGGGAGACGCCACAGAACACAGCAGTGCTACCTCTGCCTCATGGCGATGTCCGTGTCTCCTTCATCAGGAAGTAAAGATCTCGGATACAGAAGTGCATCTCTGCTCAGCAAGACTTCATCGTTCTCCATCATGAGTGAGATaaaaaactTCACAGTGTCGTGTTTGGATTTGGACACTTTCCTCTCAGCGAAAGTGAAACTGCGCCAAGAGGGGTTTCTGGAttccaacatgaagaccagttTGGATTTTGCGATCCAGACTCTGGAGAACTTTCCTGTCTCTAAACGTCGTGACGTCTCTCTCACCCTTGAAGGAGAGAGGCAGCTGGTTCGGTTCACTTCAGGGAACCCCGTCCTGCTGTACGTCGTCCGTTTGGGTCAGAAAGGTCCAGAGCTTCATCAGAAAGTCCCGGTTGGGTCTCGTCTCAATCCCTCGTGCCTGAGCGAGTCTCACTTCTTCGGGCATTGCTGCAGAGACGAGCTGGAGAGCTGCATGGATCAAGCGAGGCGGGTTTTAAGCGCGGAAATCGAGGCTAATCCGTCGTCTCAGAGCGAGCTGGAGCTGAGGATCGTGTGTGGTGAGTTTCGGATTACTTACACCACCCAGCAGCCTCAGCGCAGCCTCTTCGTCCGTCCTCACCGCCGACTGTACTTCGGCAAAACGCTGAATCTGGAGAAGCTCCTGGAGACCAAAACACGTTTGGAGAGAAGCGGCGAGATGAAGGAAGGCCTGCTGGCTTGTTTCCAGCACCTGCTGATCAACTACAGTCAGTTTCAGGAGGAAAACATCCGCGTCGTCATCCAGAGCGACGGAGAGCTGATGGAGCTCGTCTGCGGCCGCAAGGACTACCACAGCACGCAGCACTTCCTCTTCACCGATGGACAGAATCGAGCTCACAGCCACAGGGTTCAGGACATGGAGCTGTGGGAGTACGAGTGAAGGTCAAGAGCTGAGAAAGAAACACGCTAAAGAGTCACATCAGTGTGTTGCTAAATACAGATTTAGATACACAATATTGTTAAACATGCAactgacagatagatagatagatagatagatagatagatagaatcaGTAATCAGCAGTTTTggggatgtgggaggaaacatTATTTCACATGGACACAGGAAGGTTCTGCAAAACCCCAGactggctccagatccaccgcaaacctgaccaggatacagcagttactgaaaagttataataataattatatattattaaaaactaGAGATGCcacaataccactttttctcTTCCAATACCAATAACGATCTCACACAGCTTCTTATTTCTCATGAGGTTTCTCTTCAgtctatgtattttttaaaaagtgttgttaaCCACTCAGGGccgagtttcccaaaagcatcatgATGCAAAGGTCGTGATCAaatggtagagcgagcatcacactgaacactctctctctctcctaattAAGATGATCTTAACTGGGAAACTCGGCCCAGTTTTATTCTGCCTCCGACACGCAGCGGATCAATGATTTTGCATATCAGTTAATAAGTGCACTACATCTCTCTGAGTCTTAGGACTAAGATGGCTTAGGATGCACAATTAGAGACATGAGCACTGAGCCGAGGGTGtgaaagtgggcggggctggAGAAGAACCAGGACATCGAATACGTGACTATATGCTACTAGATGTTATTATATGACGCAGATGCagttctttatatatattacttTAATCTTTCCACATGCATTGcataactaatttatttataatataaaatccaCTGTAACTTTATAAACTCTTATTTATGAGAAAGCAGTAgatattctgtaaaaaaaaaaaaaaaagaaagaatacgTAAAGACATTTCCATCTTTAGTGCTAGTGAAACGGTTTTTGCCCTGAGACTATGGGTTgatgatatttttcttttgtgtcagcaaaaaaataaatcatttcacacaaaaa

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67449 lncRNA downstream 29009 33257229 ~ 33257792 (-) True G57275
TU67441 lncRNA downstream 51089 33234666 ~ 33235712 (-) True G57267
TU67378 lncRNA downstream 218116 33067534 ~ 33068685 (-) True G57215
TU67331 lncRNA downstream 486329 32799111 ~ 32800472 (-) True G57169
TU67281 lncRNA downstream 511204 32729884 ~ 32775597 (-) True G57126
TU67469 lncRNA upstream 3476 33296819 ~ 33298313 (-) True G57290
TU67471 lncRNA upstream 10227 33303570 ~ 33305518 (-) True G57292
TU67475 lncRNA upstream 32737 33326080 ~ 33360691 (-) True G57294
TU67481 lncRNA upstream 70261 33363604 ~ 33364547 (-) True G57300
TU67483 lncRNA upstream 71714 33365057 ~ 33410771 (-) True G57302
XM_026939055.2 mRNA downstream 182558 33095656 ~ 33104243 (-) True osr1
XM_034302726.1 mRNA downstream 184508 33095656 ~ 33102293 (-) False osr1
XM_026939056.2 mRNA downstream 418446 32865245 ~ 32868355 (-) True rdh14a
XM_026939072.2 mRNA downstream 522457 32759671 ~ 32764344 (-) False mtres1
XM_026939073.2 mRNA downstream 522461 32759671 ~ 32764340 (-) False mtres1
XM_026939217.2 mRNA upstream 12969 33306312 ~ 33321663 (-) True hif1aa
XM_034301269.1 mRNA upstream 35662 33329005 ~ 33336795 (-) True prkcha
XM_034302705.1 mRNA upstream 44060 33337403 ~ 33344836 (-) True slc38a6
XM_026939307.2 mRNA upstream 63687 33357030 ~ 33361865 (-) True dhrs7
XM_034301294.1 mRNA upstream 91771 33385114 ~ 33387819 (-) False six1a
TU67373 other downstream 187229 33019278 ~ 33099572 (-) True G57210
TU67278 other downstream 558060 32715827 ~ 32728741 (-) True G57124
TU66930 other downstream 625239 32653836 ~ 32661562 (-) True slc66a3
XR_004577855.1 other downstream 897657 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other downstream 897657 32374346 ~ 32389144 (-) False ndufaf1
TU67383 other upstream 46879 33340222 ~ 33344809 (-) False slc38a6
TU67416 other upstream 130326 33423669 ~ 33429769 (-) False lrrc9
TU67506 other upstream 161879 33455222 ~ 33462342 (-) True G57322
trnag-gcc_5 other upstream 236584 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67534 other upstream 272193 33565536 ~ 33570218 (-) False LOC113542143

Expression Profile