RNA id: XM_026939450.2


Basic Information

Item Value
RNA id XM_026939450.2
length 2223
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC113542114
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27425842 ~ 27435989 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCACAGCCAGCGGCTTCAGATCCATCTGGCATGGCCAGTATGGTATGAGCCATCAGAAGGTGAGCAGCCCAGTTTTCACTAACTAAAACGCTATCACTGGGACACTGGCAGGAGGAGACCAGCAAGCATGTTCAAGACCAGCTACAAGCGCGAAGTGCGCAAGGAAAAATATGAACACTCTGATGTATTTGAGGATCAAGGCGAAGCGGGATCCGAAGCCTCTTTGTGCAGTTCCAGCATGGTACCTGGCTTGGAGAGCCTGCAGGAGCTGAACAATCGCTTTGCCCGCTACATCAACAGGGCCCGTGTGCTGGAGCAGCGCAATGCTGTTTTCCGCAAGCAGCTGGAGACGCTGCAGCACATGGAAGAGGCGGCTGGGCTCGAGGAGGTCTTCAGTGAGCAGATCAGCACTAACCAAGAGCGTATCCGTGAACTTCAGGCTGAGCGTGCCAAGCTGGAGAGAGAACTCAAGGATGCCGAGCGCATGCTGGAAGAATTTAGTGTCAGATACAGAAGCGAGTGTGAATATCAAGACCAACTACGAGGGACTCTGGAGCAGCTCAATAAGGAGGCAGACGCTGCACTTCTGAGAAACCTGGAGTATCAGATTGAGTCTCAGTTCCTACAGGATGACATAAATGCCACAAAGGAGAGACATAAAAAGAATCTTGCTGAGATACAGACTTACTTGAACATCCTCCACCAGATCAACCAGACTGTTGTTTTAATGCCCAGTGTGTCAGTGGGGATCTCAGAGGAGCAGGAGAAGCTGATAAGTCAGAGGAGAGTTCCTGCTTTGAGCACTCAGTTAGAGGAGTATAAGAGTGCTCTCTGTCAGCTGCAAGCGCAAAAGCACAAGCTGCAAACCGAGATGTCAGCACTGGAGCAGGCCATCAAGATCACGCAGGAGAGCTATGATGAAGAGATCCAACTGTACAATGAGCAAATCGAAACCCTCAGAAAGGGGATTGAGGAGGCTGAGCGCTTGCTGGAGAAATACACCAATGAGTGCAGACAGCTGGCCATGTACCAGACCTCGCTGGAGAATGAGCTGGAGAGATACAAGAGGATCATTGAGAATGAAGACAGCAGATTGAATTCAGCTATAATTGGAAGCCCCATTAGTCTGTTCACCACCAGTTACAGATCACACACTCGGAGCCCCGCCATGACCAGCCGAGGGAAagATATCACTCAAGCCTTCCAGGACATTGCCAGTGCCAAGCCACGTCAGAAGAGCCAGGCCAAGAAGGTCATCAAAAAGAAGGAGCTCACCTCTAAAGACGTGACAGAGGATGTgcaagaggaaaaagagaaagaagcagTTGACCATGTTGAGGTTGAAGGGGATGTGAAACAAGTTGCTCTGTTGAAACCTGCGGCTCGGAACGACGTGCCTGACGGTGCCCAGATCAGCAAGGCTTTCGACACGCTCTGCAACATTGTGCGCAACCGCTTGCGAAGGTACAGGCAGCCTGAACCCATCACTGATTTCTATACTAAAGGCCGCTATGTCCTGGTGACAGGTGAATCCAGCTACCTGGACCCCTGCTTCTATAGCACAACACCCTCTGCTGGCCACATCTTCGTCACCATTTGTGAAAACGGTGACTCCCCATTCGAGCCCTGTGAGCGTAAAACTCCTTCTCCTCCACCTAGTCCCTCCCCTGCTGCCACCATTGTTCCAGTAATTCCTCCCAGTCCCCCAGATGACAACCACACTGAAAAGGGAGACGACGATGCAGGTGGGAAGGAAGATGGTGATGACCAAGGAACTAGCCCGACTCCACAGCGTGGCAAGGATAAGAGCgaagaagaagacaaaagtGGGCAACAAGGACCTCCACCCCTGACCTCAAGCTCCAGCGTGGCTCCGGATTCCATGAGCTATGAGAAGGTGGAAGTGGTGGAGTCCGTGGAGAAGCTTTCACCTGACCTCAGAGTGAAGGGGTATGAGGAAACTTCCATGGTGGTGGAGACCTTGATCGAAAAGATGACCAAAAAGAAGCATGGGGACAGGGCTACATGAGAAGACTCTGGTTTCTGGTGCTGCTTTTCATCCTTAAGCCAGTGCTTTACACTATTGTCCTTTGCCCCAATAGTTTTTAATCTACAGCCAAAATCCTAGAAACCCTGAGTTCAAAAGTTGCTGCTGTTTGTTAATTTGAAAAATTAGTAATTGCCATTTGCACTGTTTTGCAGTGTATTAGTTTCTGAATAA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K10378 BFSP1; filensin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577721.1 lncRNA upstream 70169 27348910 ~ 27355673 (+) True LOC113541894
TU63096 lncRNA upstream 84746 27337047 ~ 27341096 (+) True G53402
XR_004577892.1 lncRNA upstream 152665 27261131 ~ 27273177 (+) True LOC117596902
TU63030 lncRNA upstream 181684 27242955 ~ 27244158 (+) True G53340
TU63002 lncRNA upstream 303903 27111544 ~ 27121939 (+) True G53312
XR_003404268.2 lncRNA downstream 91876 27527865 ~ 27530466 (+) False LOC113542161
XR_003404267.2 lncRNA downstream 92117 27528106 ~ 27530466 (+) True LOC113542161
TU63021 lncRNA downstream 124183 27560172 ~ 27562940 (+) True G53331
TU63329 lncRNA downstream 628654 28064643 ~ 28067481 (+) True G53614
TU63332 lncRNA downstream 664624 28100613 ~ 28100831 (+) True G53616
XM_026939508.2 mRNA upstream 32646 27386257 ~ 27393196 (+) True plek
XM_026939076.2 mRNA upstream 60371 27360842 ~ 27365471 (+) True pno1
XM_026939044.2 mRNA upstream 77920 27342921 ~ 27347922 (+) True psmb1
XM_026939414.2 mRNA upstream 98187 27314533 ~ 27327655 (+) False tnfaip3
XM_026939413.2 mRNA upstream 98187 27318008 ~ 27327655 (+) True tnfaip3
XM_026939324.2 mRNA downstream 71246 27507235 ~ 27517687 (+) True gtpbp2a
XM_026939325.2 mRNA downstream 71569 27507558 ~ 27517687 (+) False gtpbp2a
XM_026939226.2 mRNA downstream 96730 27532719 ~ 27537671 (+) True gsta.1
XM_034302633.1 mRNA downstream 162125 27598114 ~ 27997810 (+) True csmd1a
XM_026939513.2 mRNA downstream 665383 28101372 ~ 28107827 (+) True rnaset2
XR_003404257.2 other upstream 218597 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 219447 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 219472 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 433131 26985978 ~ 26992711 (+) True G53328
TU61306 other upstream 3367955 24055241 ~ 24057887 (+) True LOC113540163
TU63410 other downstream 1011388 28447377 ~ 28448311 (+) True G53692
trnav-cac other downstream 1669455 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 1671853 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 2276269 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 2501559 29937548 ~ 29941181 (+) True G55091

Expression Profile