Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026939464.2 |
| length | 1126 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 6 |
| gene id | vip |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 25982599 ~ 25987144 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007188 | adenylate cyclase-modulating G protein-coupled receptor signaling pathway | biological_process |
| GO:0007200 | phospholipase C-activating G protein-coupled receptor signaling pathway | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005179 | hormone activity | molecular_function |
| id | description |
|---|---|
| K05264 | VIP; vasoactive intestinal peptide |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU62296 | lncRNA | upstream | 93817 | 25888551 ~ 25888782 (+) | True | G52683 |
| TU62264 | lncRNA | upstream | 118358 | 25850740 ~ 25864241 (+) | False | bcl2l11 |
| TU62263 | lncRNA | upstream | 118358 | 25851855 ~ 25864241 (+) | False | bcl2l11 |
| TU62265 | lncRNA | upstream | 118358 | 25851855 ~ 25864241 (+) | True | bcl2l11 |
| TU62246 | lncRNA | upstream | 135700 | 25844235 ~ 25846899 (+) | False | acoxl |
| TU62521 | lncRNA | downstream | 234169 | 26221313 ~ 26221544 (+) | True | G52873 |
| TU62506 | lncRNA | downstream | 269498 | 26256642 ~ 26344302 (+) | True | G52858 |
| TU62532 | lncRNA | downstream | 376295 | 26363439 ~ 26363733 (+) | True | G52884 |
| TU62533 | lncRNA | downstream | 379048 | 26366192 ~ 26369260 (+) | True | G52885 |
| TU62740 | lncRNA | downstream | 541263 | 26528407 ~ 26533502 (+) | True | G53080 |
| XM_034303014.1 | mRNA | upstream | 118253 | 25850600 ~ 25864346 (+) | False | bcl2l11 |
| XM_034303013.1 | mRNA | upstream | 118253 | 25851849 ~ 25864346 (+) | False | bcl2l11 |
| XM_034303061.1 | mRNA | upstream | 135696 | 25801972 ~ 25846903 (+) | True | acoxl |
| XM_026939445.2 | mRNA | upstream | 236709 | 25730463 ~ 25745890 (+) | True | tmem87b |
| XM_026939444.2 | mRNA | upstream | 236709 | 25730464 ~ 25745890 (+) | False | tmem87b |
| XM_026939419.2 | mRNA | downstream | 29476 | 26016620 ~ 26063912 (+) | True | slc29a1a |
| XM_026939418.2 | mRNA | downstream | 48574 | 26035718 ~ 26063912 (+) | False | slc29a1a |
| XM_034303055.1 | mRNA | downstream | 49377 | 26036521 ~ 26063912 (+) | False | slc29a1a |
| XM_026939416.2 | mRNA | downstream | 62766 | 26049910 ~ 26063912 (+) | False | slc29a1a |
| XM_034303054.1 | mRNA | downstream | 62968 | 26050112 ~ 26063912 (+) | False | slc29a1a |
| TU61306 | other | upstream | 1924712 | 24055241 ~ 24057887 (+) | True | LOC113540163 |
| TU61214 | other | upstream | 2177104 | 23793680 ~ 23805495 (+) | False | slc29a3 |
| TU61166 | other | upstream | 2285305 | 23697032 ~ 23697294 (+) | True | G51749 |
| TU60962 | other | upstream | 2527050 | 23454428 ~ 23455549 (+) | True | G51562 |
| XR_003404579.1 | other | upstream | 2867560 | 23114185 ~ 23115039 (+) | True | LOC113545030 |
| TU63018 | other | downstream | 998834 | 26985978 ~ 26992711 (+) | True | G53328 |
| XR_003404257.2 | other | downstream | 1210765 | 27197909 ~ 27207245 (+) | False | znf451 |
| XR_004577886.1 | other | downstream | 1210765 | 27197909 ~ 27206395 (+) | False | znf451 |
| XR_003404258.2 | other | downstream | 1210765 | 27197909 ~ 27206370 (+) | True | znf451 |
| TU63410 | other | downstream | 2460233 | 28447377 ~ 28448311 (+) | True | G53692 |
