RNA id: XM_026939471.2


Basic Information

Item Value
RNA id XM_026939471.2
length 3094
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC113542130
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30140946 ~ 30148924 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATTATTATCACCCCTGTGACGCATATCCAAAGCTGCAGTATTGCTTATATTCATACTGAAAGTAGAAGAAGAGGGcaagtttcaaaaaaaaaaaaaaagcactctaACTTCAAGAACTTTTTGCGTGAAGAAGAGGGGCGGCACAGGGGTAAGAGGAGGGTATTTATAGAATGACCTCAGCTGTtttgttgtctgtctgtctcgaCGAGTTTGGCAGTGCAGTAGGAACAGTAATGCATGAAGTACGACATCACAGTGCATTACTGCACTACACCtttctcatcctcatcatcctggGTTCATCTGCAGACTCCTTAAAAGTGACGGTACCAGCCAGCCATTTGATGGCAGCCCGAGGACACGCTGTGGTTCTGGGCTGTGAGTTCTCCCCTGACTTTGGACAAAACCCTGACCTTTCCAGCTTGGTGGTGACATGGCAGCGGCAGGAGGATAACCGCGTGGTTCATAGCTTCTATTATGGCCAGGACCAGCTGGATACGCAAAACTCAGCATACAAGAACCGTACAGCATTGTTTGTGAATGAGCTGAGGAAAGGAAATGCTTCAGTAAAGATAGAGAATGTAGGAATGAAGGATAAAGGACGCTACCTCTGCACCGTCAGCACGAGCCAGGGAACAGAAAAAGCTGAGCTACAGCTGGACTACGGAGCTTTCTACACAGAGCCGAAGTTAACCATCAGTGCACGCTCCTCTGACATTTTGGTGCAGTATGAGACTGAGGGATTTCCCGAGCCCCAGGTGATGTGGAAAGGAGAACATGGCGAGAACCTCGGCAATAACATACAGACGTTTACGCAAACAAACGAAGAGATGGATCTTTATTATATCAAAAGCGTTTACACTGCACCAAACTCTCCGCTCAGCTTCACCTTCATTCTCGAAAACCAGCTACTGCATCAATACCTGCAGAGGCCCGTCAGCTACACTGGTGGACAGAACTCCTGCTTTTATGAAGCTATTGCACTTGCAgtcatttcttttctcctcGTCCTGACTGCAGCGATTTTGGCCGGGATATACTATTGCAAGAAGAAATAAACTGAAAGACCGTTTCTTGAAAAGGACTGAAGTCGACAACGTGGAGCTGGACAAATTTTTTGGATTATTGCTGATCACCTTCctgtattacatttaattagatGATGACATAATATAAAAACTGGATATAGCTTTAAtgatgttttgcttttttgtatAGTTTGTAGAGTGTGTCTTTGAAGAGCAAGAGTTTTAATATAACTTTTACTTTGgctaattatttttgttttataaaacacTGTCAAGGTGCCATGAGactgcaatattttttatttttttacagaactTAACAGTACAAATGTCCTGAGTGTGCTTTcactgacatcagtgcctgagctcTGTGTATGTCTGCAGCACAGGATTcatcagttattattattatttttttaattataacaaaTAACCTTGACAGTGTTTTAGCAATTTTTACCCAGTATCTGAATTCTTACCCAGGTCAACTTTCCCAGGATCCTTGGCTGTTCACTCACCACCAGTAACAGCTTATACTTACTGTTCATCATGATTAAGATGATCAGAATGTCAAGGTCTCATGAAGCTGGGAACTGTTTGTGTCTCAAAGATAACACTTTCTCAATCACTTTCTCAAAACAGTCTTACATTCTTGTGCACGATTTGAACCTTGGTATGCCGAATTCGCACAAACGCAACAAACAGacgtattaatattaatattattattattattattgctttgaAACTTGTTTAAGCGTCGGTCAGTGATGCTCTGTGTTAGATAATAGATGCTGCTAAAAtagtttataaaatgtttagaatTATTTCAAGAAATCATTTTgaactttttctgttttagcaGTTTGACACTGGTGGTTTTCAATCAATCTGATTTACTGCTCAGGATTAAAGTATCAATGCAAAAGGACATTCTTACTATGTCTTTCTACATGTTAACATAAGATATCCATAGTTGGATGGGTTtgataaacagtttattaaGTTACATTATAACCCAAGCTAGACGCATTCAAAGACTTAATAGCTAACTTATTTCTTCCAAATATCTTCTTTTTATGTAGGCAGTtgctacatttttaaagaaagcctAGATTAGCCTAAAACAAAAATCACCAGTTTTAAGACATTTAATTGTACTTAATCTCATACTCTAACGCTTATTTTGACTCTGCTATCTAGCTCTTGTAAAATAAACCTCATATCATGGATGCCAGTGATTTAGATCAAAAGCGAGCTTACTTGCTACCCAACTAACAGAAATGATGCCAGGAACATTCCATGTTCCTACAGTCAGGCGTTTGAAGCTAACATTTTAGTATTTCTCTAACACTTAtaaacacagataaaaaaaaagcaatgatagcaactttttctttcttttttttatttaaatttttaaaattatttgttcatcagtgattttttttttttttttggccataaaATTTGGTTCAAAACAATCTGCGCTATGGATATTTGGGGAAACCAATGTGTGCATGTACAGTCAGACATAGCTAAAAACTGTAGAATATCAGGTGTTAAATCAAGATGACACTGCCTTACTCCACCCCTCTGTTATTAAACGGTGAAGGAAGGATggaaaaaacagtatttttagtTGGTTTTACTGAATGTTTAGCAAGGGAGGGTGTAACGAACGAAGttgagagaaaacaaaacaattaaaatggcAGTTAACTTTTACTGTCTCTGCTGCTGTCATTAATCCGTTAATCTCTTTCACAAAATGGACGTTCTACACATATCGTGACATACGGAGCTCTGAAACATCATGTTGATGGATGTAGTGGTAGTGGAGGAATACAAGGAAGCCTTTATTTACAAGCAAAACAGCCTCAGTAGAAATTCAGGCTACACGAGTTGAGTCTTCAACCTTGATTAATGCACTACTATTTTTCTGAGCATCctgtttagtttttaaaaatggatgagttccctatatatatacagttgaggtcaaaagtttacatacccctttcagaatctgcaaaatgtttatcattttaccaaaataagagg

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04925 Aldosterone synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65018 lncRNA downstream 91246 30048430 ~ 30049700 (-) False cdh23
TU64883 lncRNA downstream 264186 29875406 ~ 29876760 (-) False LOC113542120
XR_004577797.1 lncRNA downstream 264226 29873060 ~ 29876720 (-) False LOC113542120
TU65077 lncRNA upstream 13827 30162751 ~ 30162970 (-) True G55220
TU65051 lncRNA upstream 49401 30198325 ~ 30200157 (-) False runx3
TU65128 lncRNA upstream 190553 30339477 ~ 30339850 (-) True G55270
TU65129 lncRNA upstream 191484 30340408 ~ 30344538 (-) False rsrp1
TU65226 lncRNA upstream 198246 30347170 ~ 30387537 (-) True G55349
XM_034302579.1 mRNA downstream 29785 29879295 ~ 30111161 (-) True cdh23
XM_026939036.2 mRNA downstream 31426 29879295 ~ 30109520 (-) False cdh23
XM_034302580.1 mRNA downstream 31749 29879295 ~ 30109197 (-) False cdh23
XM_026939035.2 mRNA downstream 31749 29879295 ~ 30109197 (-) False cdh23
XM_034302581.1 mRNA downstream 31749 29963154 ~ 30109197 (-) False cdh23
XM_034302618.1 mRNA upstream 6163 30155087 ~ 30161224 (-) False khdrbs1a
XM_026939415.2 mRNA upstream 14423 30163347 ~ 30175120 (-) True chp1
XM_026939142.2 mRNA upstream 51229 30200153 ~ 30253456 (-) True runx3
XM_034303117.1 mRNA upstream 191475 30340399 ~ 30343584 (-) False rsrp1
XM_034303167.1 mRNA upstream 196197 30345121 ~ 30352294 (-) False eif2ak2
TU65057 other downstream 18124 30112034 ~ 30122822 (-) False G55209
TU65059 other downstream 18291 30111831 ~ 30122655 (-) True G55209
TU65060 other downstream 18291 30112322 ~ 30122655 (-) False G55209
LOC113541988 other downstream 459220 29679411 ~ 29681726 (-) True LOC113541988
trnae-cuc_11 other downstream 938943 29201932 ~ 29202003 (-) True trnae-cuc_11
XR_004577811.1 other upstream 3984 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other upstream 4563 30153487 ~ 30161223 (-) False khdrbs1a
TU65130 other upstream 191484 30340408 ~ 30344538 (-) True rsrp1
trnag-gcc_2 other upstream 606482 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 703013 30851937 ~ 30852007 (-) True trnag-gcc_3

Expression Profile