RNA id: XM_026939472.2


Basic Information

Item Value
RNA id XM_026939472.2
length 1855
RNA type mRNA
GC content 0.49
exon number 13
gene id fbxo9
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26670892 ~ 26684508 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCACACGCCTGCCTGAGCTGTGGAAAGCGCCACTTAATGCGACCTTGCTCATGCTACATTTCTGCCTGACGGTGAACGGGATGGCTGCCGTGTGGCGCGCTCGTAAATTTGCTCGCTGCGTCGTCCGTTTCTCTGACCGTGAtctgtaaacaaaaacacaccgaTACTGCACGCGCCACAACAAGACGTCAAAGATACGCCAACATGGCTGAACAGAGCAACCAAAATGCCGATGCTGGTTCTGTCGAAGAAGGGGAAGATGAAAATTCTGAAGACTCTAATCTGCAGCTGGAGCTTAGTGCTTTTAGGGCTCAGTGGATGTCAGAGCTGCGTCCTGGCTCTGGTATTAAGACAGGACTGTCCAAAGCTGCTGAACTGAAGAAGACACAGGAGCTGGCCAGAGAGGAAAAAGCCCGAGAGCTGTTCCTGAAGGCTGTTGAGGAGGAGCAAAATGGAGCTGTTTACGAAGCCATCAAGTACTACAAGAGTGCAATGCAGCTTGTCCCTGACATTGAGTTTAAGATCAACTACAGCAGATCTCCTGATCCAGACCGAGTGGGTGGGACCTACCTGGAGGAGAACGAAAACGATGGCGAGATTGATGATCTCCTTGCATACCTCCAACAGCAGCTGACTGTAGAGCATTCCTCCCAGAAGATTTGTCAACCTGAGGTGGAGACATCGCAGGTGCATATTTCAGTGTTGCCACTAGAGGTGCTGATGTATATCTTCCGCTGGGTGGTGAGCTCGGATTTAGATATGCGGGCATTAGAGCAGCTTTCCCTTGTCTGCAGGGGTTTCTACATCTGTGCAAGGGACCCTGAGATTTGGCGCTCGGCCTGTTTGAGGGTGTGGGGCCGGAGCTGCACCAAATTGCTGCCGTTCACCTCGTGGAGGGACATGTTCTTAGAGCGGCCACGTGTCCGCTATGATGGTGTTTATATCAGTAAAACATCATACATCCGTCAGGGAGAGGAGTCTCTGGACGGCTTCTACAGAGCGTGGCACCAGGTGGACTATTACAGgtaCCTACGCTTCTTTCCCGATGGTCAAGTAATGATGTTGACCACGCCTGAGGAGCCTCTGGCCACGGTTCCACGTCTGCGCAGCAAGAACACAAGGATGGACTCCATCATGATCGGCCACTACCGGCTGTCCCAGGACACGGACAATCAAACCAAAGTTTATGTTGTTGTATCCAAGAGAAAAGACGAGAAGGCGCCCGAGTACCAGAGGAGTCGGTTCTGCAGGCGGTACCCAGCCCCCGAGTCAGAATGCTCCTTCCATGTGGGGCTGCAGCTTTCCTCTGGGGGGCGCCAGCGCTTCAACAAGCTTGTGTGGATCCATCACTCCTGCCACATCACCTATAGaTCAACTGGAGAAACGGTCATCACAGCATTCGACCTTGACAAAATGTATACACCGTTGTATTTTGCCCGAGTTAAGAGCTACACTGCATTCTCAGAGCGCCCCCTGTAGGGCCACAGCAGAGCTGCATGTGGAACGTCAAAGAATAACAAACGGTTTACGCATTTATATCTCCAACAAACATATCACCCCCTTAATCCTCCTGGCTTTGAGCATGAGGctgaatgtaaagaaaaaaaaaaggttgagtGAGGATTTCTGAAAATTCCTTATAGCAACGTAGCAGCGTTACCTTCCAGGTttactgtttgtctgtttgaacTGATCACTGGCTTACTGTTGTAACCGCAGTAGATGTAATGCATAAATGCAGCTGTTTTCTCCTTACTTTTAACCAATGCTGAATGTTTTcacttatatatatttgtggATTTTGGTATGTGTCTACTGAAGACTGGAACAACCAAATAAACATGTTGAAGgtt

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0032006 regulation of TOR signaling biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10295 FBXO9; F-box protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62752 lncRNA upstream 117740 26552936 ~ 26553152 (+) True G53092
TU62751 lncRNA upstream 118170 26552518 ~ 26552722 (+) True G53091
TU62750 lncRNA upstream 118607 26552075 ~ 26552285 (+) True G53090
TU62743 lncRNA upstream 132372 26538234 ~ 26538520 (+) True G53083
TU62742 lncRNA upstream 133425 26537262 ~ 26537467 (+) True G53082
TU62838 lncRNA downstream 114190 26798698 ~ 26799518 (+) True G53172
TU62953 lncRNA downstream 249430 26933938 ~ 26934265 (+) True G53280
TU63053 lncRNA downstream 333453 27017961 ~ 27018846 (+) True G53363
TU63006 lncRNA downstream 349341 27033849 ~ 27036808 (+) True G53316
XR_003404272.2 lncRNA downstream 371256 27055764 ~ 27056998 (+) True LOC113542178
XM_026939463.2 mRNA upstream 35679 26631565 ~ 26635213 (+) True LOC113542124
XM_034302731.1 mRNA upstream 381990 26250140 ~ 26288902 (+) False fgfr2
XM_026939446.2 mRNA downstream 42741 26727249 ~ 26736006 (+) True eloal
XM_026939470.2 mRNA downstream 71152 26755660 ~ 26798512 (+) True lrrc1
XM_034302700.1 mRNA downstream 118687 26803195 ~ 26809508 (+) True LOC117596838
XM_026939159.2 mRNA downstream 145716 26830224 ~ 26865137 (+) True mlip
XM_026939160.2 mRNA downstream 145716 26830224 ~ 26865137 (+) False mlip
TU61306 other upstream 2613005 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 2865397 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 2973598 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 3215343 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 3555853 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 301470 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 513401 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 513401 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 513401 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 1762869 28447377 ~ 28448311 (+) True G53692

Expression Profile