RNA id: XM_026939476.2


Basic Information

Item Value
RNA id XM_026939476.2
length 1412
RNA type mRNA
GC content 0.54
exon number 4
gene id LOC113542134
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30447258 ~ 30458120 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATCCAATCATTTGTTGTCTTTCTAACAGTCTGGTGAGAGTAAAGGACACTTTTCGAATGAGAAATGGGTCGATACAGCGGGAAGAGTTGTCGTCTGGGTTTCATGCTGACCATGACCAGCATGTTCTTCTTGGCCGAGATCGTGGGCGGTGGGTCGGGAACTCCATAGCGCTGGTGTCGGACTCGTTTAACATGCTGTCCGACATCATCTCGCTGTCGGTGGGTCTCGTGGCGGCGCGCGTTCGTCGCCGCTCCTCCTCTCCGCGCTGCACCTACGGGTTGGTGCGCGTCGAGGTGCTGGGTGCGCTGGCGAACGCCGTGTTCCTGGCCGCCGTGCGCTTCTCCGTGTCGGCCCAAGCGCTCGAGCGGCTCGCACAGCCCGAGGCCATCGACCAACCAGAGCTAGTGCTTGTCGTCGGCAGCATCGGACTCTGCATCAACGTGGTGGGACTGCTTGTCTTTCAAGACTGGAGATGTCTGCGCAGGAAAAGCGCGCGCACGACGCAGCGAGACAGCGAACCGAAAAGCGAAACGGACACAGAAGCAGGCTTCCAACGGACAGATTTGGATGAAGTGGATGAATTTGAGGATGAAGGCCACCACCTTAACATTAGAGGAGTGCTACTCCACATGCTAAACGATGCTCTAGGATCAGTGGTGGTAGTGGTGACATCAGCTCTGTTCTATGTCTGGCCCAAGGCCCCAGATGTTCCATGTAACTGGCAGTGCTATGTGGATCCAAGCATGACGCTGGTCATGGTGGCCATCATCATGCCCTCTGCCATTCCCCTGGCTCGAGAAACAGCAAGCATCCTGCTGCAGATCATCCCTCACAACATGCCCTTCAACAGAATCTTGCAAGACGTGTGCAGCCTTCCCGGGGTCCTAAGTGTCCACGACGCCCACCTGTGGGAGCTGACGAAGGGTCGATACGTGTCCTCGCTGCATGTGCGAGTCTCCACCGAGCTCCACAGTTCTCTCAGTGGAATCAAAATGCTCCATCAGCAGATCAGGGACCTCCTCCATCACGTCGGCATCCACAGCGTGACCGTTCAGCTGGAATTCGGCGACGGAAGCCTGGAGAGGAGCGCCTGTAGCACTCCGTGTTCATCCCCCTCCTGCCTGAAAGTCTCCTGTTGCCCTCATGATGTTGCTGGACTCCCATTGTGTAAAGCAAACCAGCTCCCTCACCCCAGAGAATTCCCCGTAAACATGTATGAAACAAGCAGCGTACCTAAAATACAAGCACTAAGCCCATCAACACATTCCTACACAGCCACAAAGTTTTAATAGCCATgtgagtaaaataatcagtgaacaCTTCTATTTGACTTGTAGCAAAAGCCTAAAGCTTAATTTGGGTCAGAGAGAGTCCTTGATGAGGAAAGCACAAGAGATaatattaaaagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65232 lncRNA downstream 32789 30355571 ~ 30414469 (-) True G55351
XR_004577788.1 lncRNA downstream 45862 30397412 ~ 30401396 (-) True LOC113541972
TU65226 lncRNA downstream 59721 30347170 ~ 30387537 (-) True G55349
TU65230 lncRNA downstream 60862 30357954 ~ 30386396 (-) False G55351
TU65129 lncRNA downstream 102720 30340408 ~ 30344538 (-) False rsrp1
TU65284 lncRNA upstream 14484 30472604 ~ 30477610 (-) True G55400
TU65286 lncRNA upstream 16616 30474736 ~ 30475855 (-) False G55400
XR_004577792.1 lncRNA upstream 46216 30504336 ~ 30618177 (-) False LOC113542125
XR_003404263.2 lncRNA upstream 113225 30571345 ~ 30618184 (-) False LOC113542125
XR_003404264.2 lncRNA upstream 113225 30571345 ~ 30618177 (-) False LOC113542125
XM_026939174.2 mRNA downstream 70209 30368672 ~ 30377049 (-) True rhd
XM_034303167.1 mRNA downstream 94964 30345121 ~ 30352294 (-) False eif2ak2
XM_034303168.1 mRNA downstream 94965 30345121 ~ 30352293 (-) False eif2ak2
XM_034303166.1 mRNA downstream 94965 30345121 ~ 30352293 (-) False eif2ak2
XM_026939516.2 mRNA downstream 94965 30345121 ~ 30352293 (-) True eif2ak2
XM_026939520.2 mRNA upstream 165129 30623249 ~ 30642158 (-) True LOC113542166
XM_026939200.2 mRNA upstream 246894 30705014 ~ 30719700 (-) True fam204a
XM_026939161.2 mRNA upstream 288112 30746232 ~ 30753678 (-) True LOC113541964
XM_026939519.2 mRNA upstream 462785 30920905 ~ 31006462 (-) False gfra1a
XM_026939518.2 mRNA upstream 462785 30920905 ~ 31006462 (-) True gfra1a
TU65130 other downstream 102720 30340408 ~ 30344538 (-) True rsrp1
XR_004577811.1 other downstream 286035 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other downstream 286035 30153487 ~ 30161223 (-) False khdrbs1a
TU65057 other downstream 324436 30112034 ~ 30122822 (-) False G55209
trnag-gcc_2 other upstream 297286 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 393817 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_4 other upstream 402316 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577789.1 other upstream 1088240 31546360 ~ 31548633 (-) False LOC113541990
TU66090 other upstream 1105435 31563555 ~ 31600685 (-) True G56150

Expression Profile