RNA id: XM_026939486.2


Basic Information

Item Value
RNA id XM_026939486.2
length 3562
RNA type mRNA
GC content 0.54
exon number 25
gene id herc3
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6549846 ~ 6583135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGAAGGCGTTATTGTGCTTCATATATAGTGAACCTATGTAGGGTGGAAGGCTGTATTTGGGACGAGACCTTAGCTGTAACGTCCTTGTTATTATCATAACATACGGAGAAGCAGAAAATAACCTGCTATAAGTGAAAGGGGTATGTACCTTTCAAGGCTCGTCATCCACTCGAAGGGGAGAAGGCTGGGCCACATAGCCTAAGGCTCCACcgccctctgtctctcctgtttCTCCTTTGTACCCATCTCTCGGTGTGTGAGCCGTGATGCTGTGCTGGGGCAGTTCAGCTTGGGGTCAGTTGGGCCTCGCTGTATCCGAGGCCGCTGTGTTTGAGCCGCGGAGCTGCTGCGTGTTCGATGGCAGAGGGCTGAAAGAGGCGGCATGCGGCGGGCAGCACTCGCTCTTCCTAATGCATGATGGGAGTGTTTACACATGTGGCTCCAACAGTCACGGGCAGCTGGGCCACGAGAAGCCTGGACTCAAGCCTGagCTGGTTGGGGCGCTGGATGCTCAGAAGATTGCAGGTGTGGCGTGTGGGCAGGCCCACTCTCTGGCACTGAGCGAGCAGGGCCAGGTGTTTGCGTGGGGCGCAGGCGAGTGGGGGCAGCTCGGTCTCGGCACTGCAGAGGAAGCTGTCCGGGTTCCCCGATTGATTAAGAAGTTGTGTGATCATCAGATCTCACAAGTCATGTGTGGCAACCAGCACTGTATCGCACTTTCTAAAGATGGTCAGTTGTTCACGTGGGGTCAGAACTCGAGCGGTCAGCTGGGTTTGGGGAAAGGTGAGCCGAGCTCTCTGTCTCCTCAGCCTCTCAAGTCTCTGTGTGGGATCCCACTGGCTCAGATCAGCGCTGGAGGAGACCACAGCTTcgccctgtctctctctggagCCGTGTTCGGCTGGGGCAGGAACAGCGCCGGGCAGCTGGGCCTCAATGATGAGCAAgATCGGGCTGTTCCCTGCCATATTAAATTCTTGCGCTCACAGAAAGTGGTCTACATCAGCTGCGGGGAGGAACACACTGCCGCTCTGACCAAGGATGGAGGTCTGTTTATGTTTGGAAATGGGTCGAGAGGACAGCTGGGGCACGGCTCCACCAACAACGAGCCTCTGCCACGCAGGGTTTTGGAGCTCATGGGCACCGAGGTGTCCCAGATCGCCTGTGGCAGACACCACACGCTGGCGTTTGTGCCCTCCACCGGCTCGGTGTATGCGTTTGGCTGTAATGCTCAGGGCCAGCTCGGCTTAGGGACCAGAGGAAACGCCATGATCCCCCTACCAGTCCGAAACATCCAGCCTCCTTTTCTCACCAACACACAAACAGGCACGGATCAGTACAGCATCAGCAGGATTCACTGCGGAGGCGACCACAGCTTTCTGTTGCTGTCACATGGCAAGaGTTGCCCAGATGACTTCCGCGTTATCAACACATCGAAAAGCATCTCCCTGATTAATAAGGAGAGTCTAAACAGTTGGAGGCTGAAGCTCCTGGACAGTACTGACTCCAGCATCACAAATGACATCATTCTGCTGTTGTCCTCGACCGCATGTTGGAACGCCAGCTTCCTGGACCAGAGTGATGATGGTCATTTTAAAACCAACCCCAAAGTCCCCGGAATCGACCTCAACTCAGTCAGGCTGCTGTTCGAGATCCTGATGAAGCCAGCCTACTCACGGCTGCTGGAGCAGacCACGAAGAGCTTCGAGAGTTTGCTGATCCCTCAGCTACCCTGCTCTCCTCCTGACGTAGAGGCCATGCGCATCTACCTGATCCTCTCCGAGTGTCCGGCTCTGCACGACTCCAAAAACTACATCTCTCTCACCATTCCACTCGCCATGGCTATCCTCCGGCTGGACGCCAACCCCAGCAAAGTGCTCGATAACTGGTGGTCACTGCTGGACAGTGAGGTCTTCTCCAGGTTGGTAGAGATGTATAAGAGCATTGTGGTGTTCCTGCTCACCGGTGGCAAGGCCCTCCTTATTCCTGTGTTTCTGGAGAGCTACATTAGTGCTACTCTGAAACTGCTGGAGAAACTACACAAGGTGAACCAGAAAGCCCACCATGTGGAGTACAACTGCTTCTACATCCCCGACATCACCAGCCTGGTGGACATCCAGGAAGACTACCTCAAATGGTTCCTAAGCAAAGCTGAGATTaaaatgcaGTCTCCTCCAGTACAGAATTCAGTTACGTTATGTGCCTATCCGTTCATATTGAACGCTCAAGCTAAGGCAACCATGTTGCAGACAGATGCTGAACTGCAGATGCAGATGGCAGTGAGAGGGGCCAACCTGCACAACATGTTCATGCTGTTAACCCTGGAACCTTTGCTGGTACAAAACCCGTTTCTAGTCCTGCACGTGCGGAGGGATCACCTGGTCAGCGACGCGCTGCGTGAGCTCACCATCTATAATGATGTGGACTTGAAGAAGCCCCTAAAGGTGATTTTTGATAGAGAGGAGGCAGTGGATGCAGGAGGAGTCACTAAAGAGTTCTTCTTACTACTGCTGAAAGAGCTGATGGATCCAGTCTATGGCATGTTCACCCACTACCCAGAATCCAACCTGCTCTGGTTCTCTGATAAAtgttttgtTGAACACAACTGGTTCCACTTGATTGGGATCGTCTGTGGCCTGGCTATCTACAACTCCACCGTGGTGGACCTGCACTTCCCTCTCGTGCTCTACAAGAAGCTTCTAGATGTTTGTCCTGTGCTGGATGACCTGAAGGAGCTGTCCCCTACTGAGGGCAGGAGTCTCCAGCAGCTGTTGGACTATGAGGAGGATGACATAGAGGACACCTTCTGTCTCAACTTTgctATTAGCCGGGAGTATTATGGGGTAACAGAGGTGAAGGAGCTCGTCCCTGGAGGAGAGAACAAAACAGTGGATAAGTCCAACAGagaggAGTTCGTGCAGGCCTATCTGCACTACGTGTTCAGTGAGTCAGTACGAGAGCTCTACTCTGCGTTTGCCAGCGGGTTCCTGAAGGTGTGTGGTGGCCGGATCCTCTCTCTGTTCCAGCCCTCTGAGCTCATGGCCATGGTGGTGGGCAACAGCAGCTACAACTGGGAGGAGCTAGAGAAGAATGCGAGCTACAAAGGCGAGTTCTCGGCCTCCCATCCTACAGTGCGGATGTTTTGGGAGGTGTTCCACGAGTTTCCCttggagaaaaagaaacagttcTTACTGTTCCTCACAGGCAGTGACCGGATCCCCATCCATGGCATGTCCAGCCTGCACATCATCATCCAGTCCACGTCGGCAGAGGAGCACTTCCTGCCCGTCGCTCACACCTGCTACAACCTGCTAGACCTGCCGTGCTACAGGAGCAAAGAGACGCTGCGCTCGAGGCTCACATGCGCCATCGAGCAGTACGAAGGCTTCAGCCTGGAGTGAGAACCCACcgctctttcacacacactcgcactttGACCGCGGACGGATGACGTCCGATCTCCCATGCAGAGCGGCTCTGACAGTGTGAGTAGGACCGTGCACAGACAGTGAACTCTGCTGAACTCTGAGTGGAATAAATCTTTTATCTGATTTTGTTTG

Function

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49367 lncRNA downstream 11296 6535704 ~ 6538550 (-) True G41731
TU49177 lncRNA downstream 177980 6371655 ~ 6371866 (-) True G41563
TU49084 lncRNA downstream 247758 6295232 ~ 6302088 (-) True G41491
TU48873 lncRNA downstream 673455 5876101 ~ 5876391 (-) True G41300
TU48715 lncRNA downstream 948703 5599984 ~ 5601143 (-) True G41174
TU49415 lncRNA upstream 94004 6677130 ~ 6680273 (-) True G41768
TU49467 lncRNA upstream 211453 6794579 ~ 6797620 (-) True G41809
TU49606 lncRNA upstream 358114 6941240 ~ 6941458 (-) True G41938
TU49614 lncRNA upstream 428967 7012093 ~ 7012306 (-) True G41944
TU49679 lncRNA upstream 433639 7016765 ~ 7017405 (-) True G42008
XM_034303131.1 mRNA downstream 157324 6384600 ~ 6392522 (-) True elmod2
XM_034302452.1 mRNA downstream 282135 6253523 ~ 6267711 (-) False znf330
XM_026945875.2 mRNA downstream 286602 6253523 ~ 6263244 (-) True znf330
XM_026945898.2 mRNA downstream 306707 6229644 ~ 6243139 (-) False il15
XM_026945888.2 mRNA downstream 306709 6229644 ~ 6243137 (-) True il15
XM_026939506.2 mRNA upstream 1659 6584785 ~ 6602144 (-) True LOC113542150
XM_026939514.2 mRNA upstream 21448 6604574 ~ 6620882 (-) True herc5.1
XM_034302956.1 mRNA upstream 40343 6623469 ~ 6641622 (-) True LOC113541261
XM_034302955.1 mRNA upstream 60807 6643933 ~ 6659991 (-) False LOC117596878
XM_034302954.1 mRNA upstream 60807 6643933 ~ 6659991 (-) True LOC117596878
XR_004577821.1 other downstream 730333 5756711 ~ 5819513 (-) False gab1
TU48529 other downstream 1321923 5203706 ~ 5227923 (-) False lsm6
TU48528 other downstream 1321923 5225030 ~ 5227923 (-) False lsm6
XR_004577883.1 other downstream 1940396 4545584 ~ 4609450 (-) False dclk2a
trnah-gug_3 other downstream 3515293 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577908.1 other upstream 578348 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other upstream 578348 7161474 ~ 7204151 (-) False lef1
trnam-cau_1 other upstream 1883858 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 1884910 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 1885945 8469071 ~ 8469142 (-) True trnam-cau_3

Expression Profile