RNA id: XM_026939483.2


Basic Information

Item Value
RNA id XM_026939483.2
length 514
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC113542138
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28504100 ~ 28505277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCATACCACAGGGTTAAGCTCAAAGCTTAGTAATCATGTTTGTAAAGGTTGTAGCTCCACTCCTGGCGGTCTTCTTGGCCGTGGCGAGCGCTGACCTTGTCGGAGCCCCGGTGGATGCAGACATAAACAGCCCAGAAGTCCAGGATGCCCTGCGGTTTGCAGTCGCTCAGTATAATGCAGAGAGTGACTGCATATACACCAGCCAGGTTGTTAAGGTGATCAAGACCCAGGTGCAGGTTGTTTCTGGTTTGAAGTACATCTTCACTGTTGAGATGGCCAAGACTTCCTGCAAAAAAGCGGAACCTGAAAACACGTGTGCCATCAATTCGGACCCAGCAATTGCACAGCCTCATGAATGCAAACTTGCAGTGTGGAGTCAGCCTTGGCTGCACAGCATGATGCTAATTGAGAATACCTGCTAAGAGAGATCACATACTATCCTGAAACCCAGAATCTTTCAAgaaatacctttaaaaatgtGCCTTATTCATCAGGCTGTATTTGGAGATGCTA

Function

GO: NA

KEGG:

id description
K13900 CST4; cystatin-S

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64108 lncRNA downstream 6212 28496771 ~ 28497888 (-) True G54327
TU64103 lncRNA downstream 18855 28484982 ~ 28485245 (-) True G54324
TU64099 lncRNA downstream 33002 28470891 ~ 28471098 (-) True G54320
TU64051 lncRNA downstream 74760 28427453 ~ 28429340 (-) True G54273
TU64084 lncRNA downstream 137384 28366303 ~ 28366716 (-) True G54306
XR_004577853.1 lncRNA upstream 498003 29003280 ~ 29008803 (-) True LOC117596864
XR_004577809.1 lncRNA upstream 572033 29077310 ~ 29081966 (-) True LOC117596831
TU64569 lncRNA upstream 628603 29133880 ~ 29135669 (-) True G54775
TU64653 lncRNA upstream 757483 29262760 ~ 29263429 (-) True G54855
XR_003404254.2 lncRNA upstream 763819 29269096 ~ 29270020 (-) True LOC113542069
XM_026939117.2 mRNA downstream 2702 28499606 ~ 28501398 (-) True LOC113541930
XM_026939251.2 mRNA downstream 7498 28494642 ~ 28496602 (-) True LOC113542015
XM_026939250.2 mRNA downstream 18341 28468956 ~ 28485759 (-) True LOC113542013
XM_034302605.1 mRNA downstream 27857 28468956 ~ 28476243 (-) False LOC113542013
XM_026939481.2 mRNA downstream 57760 28437005 ~ 28446340 (-) True nolc1
XM_026939312.2 mRNA upstream 10501 28515778 ~ 28520829 (-) True ephx5
XM_026939311.2 mRNA upstream 105346 28610623 ~ 28620025 (-) True flrt3
XM_034301980.1 mRNA upstream 1177268 29682545 ~ 29684864 (-) True LOC113541985
XM_026939190.2 mRNA upstream 1181453 29686730 ~ 29695063 (-) True zfyve21
XM_026939191.2 mRNA upstream 1181453 29686730 ~ 29695056 (-) False zfyve21
TU64047 other downstream 68689 28433220 ~ 28435411 (-) True G54269
TU63465 other downstream 962801 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 2593981 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 3768213 24682246 ~ 24735887 (-) False herc4
XR_004577838.1 other downstream 3852253 24471703 ~ 24651847 (-) False lyst
trnae-cuc_11 other upstream 696655 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 1174134 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 1606554 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 1606757 30112034 ~ 30122822 (-) False G55209
TU65060 other upstream 1607045 30112322 ~ 30122655 (-) False G55209

Expression Profile