RNA id: XM_026939484.2


Basic Information

Item Value
RNA id XM_026939484.2
length 2444
RNA type mRNA
GC content 0.45
exon number 7
gene id hcrtr2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26905497 ~ 26923251 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcatacAGTGCAGTGGGATTATTCAGGAATGTTTGGGAAGGAATTTTTATGGAATGTCACACGGATCTCGTGCGCGTCTTGGCGCGCGTCCCTTTCACCCAATTGGTCACCGCGAGATCTCCTCGAGCGCGTCACGGCGGCGTTTAAAGCCCCTCGCGAGCGCGCTTTCGccctccattcattcattcattcattcattcagctgcCTGGCGATGGTGTAGGAGTGACAGGCGGCATGGCGGGGGTCACCGTCACTTCCAGCTGCCGCGACTGTTCCGCGTCCAATTCCACTGCAAGCTCCGCGCATCTGCGCCTCGACGAGGACGACGAACTTCTGAAATACATCTGGAGTGAATACTTGCATCCAAAGCAATACGAGTGGGTCTTGATAGTAGGATACATCATTGTTTTCCTGTGCTCGCTGGTCGGAAACACATTAGtttgttttgcaGTATGGAAAAACCATCATATGCGCACAGTGACCAACTACTTCATTGTGAACCTGTCCTTTGCTGATATCCTGGTCACCATTACTTGCCTTCCTGCCAGTCTTGTAGTGGACATCACAGAAACATGGTTCTTTGGAGATACACTCTGTCGGATCTTACCTTATTTACAGACaatctctgtgtctgtgtccgTGCTGACCCTCAGTTGCATTGCCCAGGACCGATGGTATGCTATCTGCCACCCTCTGAAGTTCAAGAGCACCGCCAAACGGGCCCGCAGGAGCATCATCCTGATCTGGTTGGTGTCCTGCGTGATCATGATTCCCCAGGCTATTGTCATGGAGTGTAACAGCCTCCTGCCTGAGCTGCTGCCTGAGCTCACCAACAAAACAGTTCTCTTTACTGTGTGTGACGAACACTGGGGAGATGAGATCTACCCCAAGGTCTACCACACCTGCTTCTTTATTGTTACCTATTTTGCCCCTTTGTGCCTGATGGTCCTGGCATACATCCAGATCTGTCAGAAACTCTGGTATCAGCAGATTCCAGGGACCTCATCAGTGGTGCAGAGAAAGTGGAAATCCCTGCAGTGTTCAGCTCAGACTGCAGGCCCTGGTGAGTCGGTCAAGGTCAGGACCAGTGCGGTGTCGGCTGAGATCAAGCAAATGAAATCTCGGCGGAAAACGGCGCGCATGCTGATGGTGGTGCTCTTCGTCTTTGCCATCTGTTATCTGCCTATTAGCATCCTTAATATCATGAAAAGAGTGTTTGGTGCTTTCAAGAATACAAACAACAGAGAAACAGTGTATGCCTGGTTCACCTTTTCCCACTGGCTTATATACGCTAACAGCGCGGCCAATCCCATCATCTACAATTTCCTCAGTGGTAAATTTCGAGAGGAGTTCAAAGCAGCCTTTACCTGCCACTGTACAGGTCGATGGGAAAAGAAGGAGAGGGTGAGGACCAAGATGAGCACTGACAGCCACAAATCCCTGTCCACACAAGTGAGTCATTTCGACAATGTCTCACGGATCTCGGACCAGGTCATGTAGCCCTGATCTGCGAGGGTTAATCTTCACAGCATGCCACTTCACAACTGATTTATAGGAAAACGCAAAGACAGGGAGATCTCAAAGGCTCAGACTTACACGATTGATATGCACTGAAGGCTTTGACGAAGGCATATTTGCTTCAGAGTATCACCCACATAAAGGGAAAATGACATTCTGCCTCAAATAAGAGCACAAGAACCACTGAAATTACATATCCTTTTTCTTCCAAAGATTGTTTATCTCCATGATTATGATGCCTTTCAGACAGAAAGCACAGGGCAATCTGGTGATGGAGTCATACTTTACACATGCCATTTTATTCACATCTCATGAAGACATTACCTTGCTAAAAAAGCAATAGtgtatatttgatattttacagtataacaTGCTTTATAGTGCCATGACTATATTGTTGATAATTTGCAAAAATATACCATAAAACAGTCAGAAATCTCACCagtgatttataataatttatatccTTGATAGTGTTTTTAAATTGccacaaataaattcataaaataacatcagaattccattttatttcagtgagATAAAAATTGCTCTCTGCAttgtgtgcatttgtttaatttgagATTGCACTGGGACTGTTTTTAAGTCTTTGCACAAGCTTGTATTATTCGTCACTCTGCCTCGTATGCTTGTCATGTGAAAGATATTTGCTCCAGATAATAACTATTTGCCAAGTTGCACATGTAGGGATCAGAGGGCAATCAGAGAAAAGCTAGTGGCAGATTCAAACATCTTTGTTCTGCTTTGGTAGGCCTCTTAAATATGAATGCTTTTAAAAGCAGGGCATAGAATTGCTTTTGTAATAGTGCTTTGTTGTTGGCCTTTCTTTCATGTGCTTGTTGAGTTCTTGCTGTTATCTTTAATGTAAATGCACTCCTGTTGAACAACaacagtagcaaaaaaaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0030186 melatonin metabolic process biological_process
GO:0045187 regulation of circadian sleep/wake cycle, sleep biological_process
GO:0007631 feeding behavior biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016499 orexin receptor activity molecular_function

KEGG:

id description
K04239 HCRTR2; hypocretin (orexin) receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62838 lncRNA upstream 105979 26798698 ~ 26799518 (+) True G53172
TU62752 lncRNA upstream 352345 26552936 ~ 26553152 (+) True G53092
TU62751 lncRNA upstream 352775 26552518 ~ 26552722 (+) True G53091
TU62750 lncRNA upstream 353212 26552075 ~ 26552285 (+) True G53090
TU62743 lncRNA upstream 366977 26538234 ~ 26538520 (+) True G53083
TU62953 lncRNA downstream 10687 26933938 ~ 26934265 (+) True G53280
TU63053 lncRNA downstream 94710 27017961 ~ 27018846 (+) True G53363
TU63006 lncRNA downstream 110598 27033849 ~ 27036808 (+) True G53316
XR_003404272.2 lncRNA downstream 132513 27055764 ~ 27056998 (+) True LOC113542178
XR_004577887.1 lncRNA downstream 135627 27058878 ~ 27068180 (+) True LOC117596898
XM_026939529.2 mRNA upstream 18418 26873228 ~ 26887079 (+) True fam83b
XM_026939159.2 mRNA upstream 40360 26830224 ~ 26865137 (+) True mlip
XM_026939160.2 mRNA upstream 40360 26830224 ~ 26865137 (+) False mlip
XM_034302700.1 mRNA upstream 95989 26803195 ~ 26809508 (+) True LOC117596838
XM_026939470.2 mRNA upstream 106985 26755660 ~ 26798512 (+) True lrrc1
XM_026939387.2 mRNA downstream 1983 26925234 ~ 26933750 (+) True gfral
XM_034303102.1 mRNA downstream 274658 27197909 ~ 27207245 (+) False znf451
XM_026939377.2 mRNA downstream 274658 27197909 ~ 27207245 (+) False znf451
XM_026939378.2 mRNA downstream 274658 27197909 ~ 27206370 (+) False znf451
XM_026939381.2 mRNA downstream 284077 27207328 ~ 27213122 (+) True bag2
TU61306 other upstream 2847610 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 3100002 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 3208203 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 3449948 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 3790458 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 62727 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 274658 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 274658 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 274658 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 1524126 28447377 ~ 28448311 (+) True G53692

Expression Profile