RNA id: XM_026939485.2


Basic Information

Item Value
RNA id XM_026939485.2
length 2803
RNA type mRNA
GC content 0.53
exon number 4
gene id six4a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33389493 ~ 33403724 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGTTGTCGGCTGGAGGTTTGATTTGAACATGACGCCATGACGTCATTACGTACACAGTGAACATGTGGTGCACTAGAAGGAATCCTAAACTGCACAAAGCTGATGGTCCGGCGGTGCTCCTGTGTCATTTGGAACAAGCTAGAGACAACCCACCGGTCACCTGTGTGCAGGTGAGCTAGCAGAAGGGCTGTTTTTCTGAGTGACAGAAGCAGATCTGCGCTGGCCCCGCCTCTACAGATCCCTCACCAATCAGGTCTCTTCAGAGGAAACACCTGGTGCACCTGAGTGACAGGTTAAACTTTCTTTAGCTCCTCCCCCTCCCCCGTTTCAGCCAGTCTAGTGTTTGGGAAGGTGAACACGCccccctctccctcctccctccctccctccctcctctggCCATGATAGGATTCCTCGGAGGAGTAAAAGTAACATTTGGCGAAAGGACACCCGACACCCGGTAACCGGATCCCGAGGCGGAAGAGTGACTGAATGGAGTGAACAATTAACTCAGGCATGTCTTCCTGTGGCCTGAATGTGAGTCAGACGCCGGAGGTCCGCGCGCCGCCGCGGGACGCGAAGGAAGACGACGAGGACGCGGACGACTCTGAGTATTTTGCGCGCGCGCCCgctgccgccgccgccgccgctgatttctctccttcatcatcatcatcatcttcatcatcatcgccctcctcctcctcctcctcgtctcCGTCTCCGTTGTGCTTCTCCGCCGAGCAGGTGGCGTGTGTGTGCGAGGCGCTGCAGCAGGCGGGACGGGTGGACCGCCTGGCCCGGTTCCTGCGCACCTCGGCGGCGGCGGCGGTGGTGGTGGTGAGTGTACTCCGCGCGCGCGCTCTCGTCGCCTTCCACCAGGCGCGCTACAGCGAGCTGTACGGCATCCTGCAGGGCCACAGCTTCAGTCCCGCGTGCCACGCCGCGCTGCAGGAGCTCTGGTACAAGGCGCACTACACGGAGGCGGAGAAGGCACGCGGCCGCCCGCTCGGCGCTGTGGACAAGTACCGCGTGCGCCGGAAGTTCCCGCTTCCGCGCACCATCTGGGACGGAGAGGAGACCGTGTACTGCTTCAAAGCGCGCTCACGAAACGCGCTCCGGGACGCGTACGCGCGCAACCGCTACCCGTCACCGGCGGACAAGAGGAACTTAGCCAAAGTAACGGGACTGTCTCTCACTCAGGTCAGCAACTGGTTCAAAAACCGGCGGCAGAGAGACCGGAACCCGTCCAAAAGCGAATCAGACGGGAACCACAGCACCGAGGACGAGAGCAGTAAAGGACGTGAGGATCTGTCTCCATGTCCACTCTCAGGCTCTGCTGATACGATGACATCACACGTGTCCCTTTCCTCCCGAGCCCCAGAACTCCATCCGACGGAAGACGATAAAAACATTCTGTTTAACGGgaccttccttccttcctcctccagGTTCCTCTCCTCCACAGGAAGCCTGTTGGGCGCTCCGGGTCTCACTCTGCAGCCGCTGGAGTACAGACCCAGAGTGAGCGATAAAGAGATGGACAGATCAGAAGCGATCGGTTCTTCTCATGGAGATGGAGTGCATGAGAAAAGGATGGACAGATTAGACGGAGGAGATGATGGCGTGTTAGCGATCTCTTTCTTCAGAGACACAGAAGCGGAGGTGAACAGCAGAGCTTCAGGTTCAGGGTTAGAGTACGATCACGTGGAGAAGCTTCAGCTCACGAGTTACGTTCTGGAAGATGAAGCCACGGCAGATGGAGGAAGTGAAGAAGCGTCGCTGATGAGAGACTCTTTAACCCTTCCTCATCTGCAGCTGCCTTCATCTTCCTCGCCTTCTGCACCAGAGCAAGTGCTGGTTAGCGTTAGCGGCTTAGCTGTGGAGCAGGAGCGGGGGAGTTTGGCTCCTCTGCAGCCCAACACGGTGCTCTTTAACCTGGGCGACTCTTCAGCGCTCAGTCCAGTCAAACAGGAGTGTGAACGACACATGGATTTTTCCTGCATGCAGAACACACACCTgcgcttcacacacacaccgctacACCTTCCACAGGTGGAACTGACGGAGTTCAGGGGTCGTGACTCTCagttgacctctgacctcagtGCGGACTTCCTGAGCACTTCAGCAGACGTATAGAGAAATGAACTGAATTTTGAGACGTGTGTTAAATTATCTTTATTAGCGTTAGAATTTATTCTCCCACTGAgtgtattcagtgtgtgtgtgtgtgtgtgtgagatgagaggatgaatttattaaatttcaGATAAGAAGTGCTAAAAAGCCAAACTGtataattttcacattttactgttactttagtttaaaatgtcagaaatggGACTCGCGCACATCGCAGAATTCATCCGAGCCAATCGTTTCGATTATTCGCGtcataactaatttgcataaacgGTGAGTGTAAGTGGTTTCTGGCACAGCTCTGTGTAGTGAATTTGTACAGGAAGTGAACGTTCAGCCagctgtctctgtgtctctgtcaaTGTGAGAttatacagtttttttaaaatataaaacatgctttatttaaatttactgAATCAGCTGTTGTTTTTATCCAGAGTGACGTACAGATAGACTTACAGaggctgggatttaaactcatgtCCTTCTGACTGTACACCACTGACCTTACTGCATCACCACACACCTCCTCACTGCACATAACACCAGGCTGTGTAGAAAACCActataataaaaatctaataaaataataaaccactgtactctctctctctctctctctctctctctctctctctctatcctttatgt

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67396 lncRNA downstream 13992 33369860 ~ 33375501 (-) True G57224
TU67481 lncRNA downstream 24946 33363604 ~ 33364547 (-) True G57300
TU67475 lncRNA downstream 28802 33326080 ~ 33360691 (-) True G57294
TU67471 lncRNA downstream 83975 33303570 ~ 33305518 (-) True G57292
TU67469 lncRNA downstream 91180 33296819 ~ 33298313 (-) True G57290
TU67395 lncRNA upstream 6824 33410548 ~ 33411453 (-) True G57223
TU67500 lncRNA upstream 18100 33421824 ~ 33422474 (-) True G57317
TU67389 lncRNA upstream 61975 33465699 ~ 33467307 (-) True G57220
TU67393 lncRNA upstream 76624 33480348 ~ 33520877 (-) False mycla
TU67394 lncRNA upstream 115902 33519626 ~ 33520877 (-) False mycla
XM_034301294.1 mRNA downstream 1674 33385114 ~ 33387819 (-) False six1a
XM_026939310.2 mRNA downstream 1674 33385114 ~ 33387819 (-) True six1a
XM_026939307.2 mRNA downstream 27628 33357030 ~ 33361865 (-) True dhrs7
XM_034302705.1 mRNA downstream 44657 33337403 ~ 33344836 (-) True slc38a6
XM_034301269.1 mRNA downstream 52698 33329005 ~ 33336795 (-) True prkcha
XM_034302706.1 mRNA upstream 19940 33423664 ~ 33442815 (-) True lrrc9
XM_034302075.1 mRNA upstream 64299 33468023 ~ 33484082 (-) False tdrd9
XM_034302071.1 mRNA upstream 64299 33468023 ~ 33484082 (-) True tdrd9
XM_034302762.1 mRNA upstream 81289 33485013 ~ 33505325 (-) False kif15
XM_034302761.1 mRNA upstream 81289 33485013 ~ 33505325 (-) True kif15
TU67383 other downstream 44684 33340222 ~ 33344809 (-) False slc38a6
TU67373 other downstream 289921 33019278 ~ 33099572 (-) True G57210
TU67278 other downstream 660752 32715827 ~ 32728741 (-) True G57124
TU66930 other downstream 727931 32653836 ~ 32661562 (-) True slc66a3
XR_004577854.1 other downstream 1000349 32374346 ~ 32389144 (-) False ndufaf1
TU67416 other upstream 19945 33423669 ~ 33429769 (-) False lrrc9
TU67506 other upstream 51498 33455222 ~ 33462342 (-) True G57322
trnag-gcc_5 other upstream 126203 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67534 other upstream 161812 33565536 ~ 33570218 (-) False LOC113542143

Expression Profile