RNA id: XM_026939497.2


Basic Information

Item Value
RNA id XM_026939497.2
length 3730
RNA type mRNA
GC content 0.43
exon number 22
gene id fbxo11a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25471475 ~ 25494533 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAAACCGTCCACGTGACGCCGCTTGTGGTCGTTTGTTCCTGTGAGTAAATGGCTCCTCCTGCGAAAGAGGGTCAAAAAAGGAACCTGAACCACAGTGGCGGGtttgtgaaagaaaaataacattgtgCGTTTTTGGAGGAGGGGAGCACTGATTGCCTAATAGTGCAATGTTTTTTGGGCTTCCGCTTTGTTTTTTGGATTGAGCTCTGTCTTAAATAAGGACGGGTTCTAGTGTTATTTGAATAGTAAACACCCCCAGATGAACTCGGTGAGAGCTGCGAACCGCAGACCCAGGCGAGTGTCGAGGCCGCGCCCGGTGCCGCCGGAAAGAAACAACCAAGAAAGAGATGAGGAGGGTGCTGGAGACATGGTTGCTGACGAATCTGGTCCAGGAGCTCAGAATAGTCCATATCAACTTCGGAGAAAGTCTCTTTTACCCAAAAGAACTGTATATCCAGCCAAGACTAATATGGAGGGTGATTCCACATCAGCAACAGAAAACTTTGGTCATCGGGCCAAGCGTGCTAGGGTGTCAGGGAAATTACAAGACATAACAGCTGCTCCAGCAGAGCAGTACCTGCAAGTGAAGCTTCCAGATGAGGTGGTACTGAAGATCTTCTCCTATCTGCTGGAGCAAGATCTGTGTCGGGCTGCTTGCGTGTGCAAACGCTTTAGTGAACTGGCCAATGACCCCATTCTGTGGAAGCGACTCTATATAGAGGTTTTTGAATACGCCCGTCCCATGATGCACCCAGACTCAGGAAAATTTTACCAAATTAACCCAGAGGAGTATGAGCAGCCCAATCCATGGAAGGAGAGCTTTCAGCAGCTgtataaggGAGCACATGTGAAGCCAGGCTTTGCAGAACACTTTTACAGTAACCCTGCCAGATATAAAGGGAGGGAGAATATGCTGTATTACGACACTATTGAGGATGCATTAGGCGGGGTACAGGAGGCTCACTTTGATGGGCTTATATTTGTCCACTCAGGGATTTACACAGATGAGTGGATCTATATTGAGTCGCCAATCACAATGATTGGTGCAGCAGCAGGGAAAGTTGCAGATAAAGTTGTCATTGAGAACACTAGAGATTCAACATTTGTGTTCATGGAGGGGTCAGAAGATGCATATGTCGGCTATATGACAATAAAGTTCAACCCTGATGATAAGTCAGCCCAGCATCACAATGCGCATCACTGTTTAGAGATCACAGTTAACTGCAGCCCCATCATTGACCACTGCATCATACGTAGCACATGCACAGTGGGTTCAGCAGTATGTGTGAGTGGCCAAGGGGCGTGTCCCACTATCAAACACTGTAACATCAGCGACTGTGAGAATGTAGGCCTCTACATCACTGACCATGCACAGGGCATTTTTGAAGATAATGAGATATCCAATAATGCTCTAGCTGGGATCTGGGTTAAGAACCATGGAAATCCCATAATTAGAAGGAATCACATCCACCATGGTAGAGATGTGGGAGTCTTTacttttgaccatggcatgGGCTACTTTGAAAGCTGCAACATTCATAGAAACCGGATAGCAGGATTTGAAGTGAAGGCATATGCCAACCCCACAGTAGTGCGCTGTGAAATCCACCATGGACAGACTGGGGGCATATATGTACATGAAAAGGGCAGAGGGCAGTTCATTGAGAACAAGATCTATGCAAACAACTTTGCTGGTGTATGGATTACCTCAAATAGTGACCCTACAATTAGGGGTAATGCGATCTTTAATGGCAACCAAGGTGGTGTTTACATATTTGGTGATGGCCGGGGTCTTATTGAAGGAAACGACATATATGGGAATGCCTTGGCAGGGATTCAGATCCGGACCAACAGCTGTCCTATTGTCCGGCATAACAAGATCCATGACGGCCAACACGGGGGCATATATGTGCATGAGAAAGGCCAAGGTGTGATTGAGGAGAATGAAGTCTACAGCAACACATTGGCTGGAGTGTGGGTAACCACAGGAAGCATGCCTGTACTGCGCAGGAATAGAATACACAGTGGAAAACAGgttggtgtttatttttatgataatgGGCATGGAGTGCTGGAAGACAATGATATCTACAACCACATGTATTCAGGAGTTCAGATCAGGACTGGAAGCAACCCAAAAATAAGACGAAACAAGATCTGGGGTGGACAAAATGGCGGCATCCTTGTTTACAACTCTGGTTTGGGTTTAATAGAAGACAATGAGATCTTTGACAATGCCATGGCAGGGGTTTGGATCAAGACAGACAGCAACCCAACACTTCGTAGGAATAAGATCCATGATGGGAGAGATGGAggaatttgcatatttaatggAGGACGAGGGTTGCTGGAGGAGAATGACATCTTTAGGAACGCCCAGGCAGGGGTCCTCATCAGTACCAACAGTcaccctgtactgagaaaaaacaGGATATTTGATGGCTTTGCTGCAGGTATTGAGATTACAAACCATGCAACTGCAACTTTAGAAGGAAATCAGATTTTTAACAACCGCTTTGGTGGGTTGTTTCTTGCATCTGGTGTCAACGTGACAATGAAAGATAATAAGATAATGAACAATCAAGACGCCATCGAAAAAGCTGTGAGCCGAGGACAATGCCTGTATAAGATTTCCAGTTACACCAGCTATCCAATGCATGATTTTTACAGATGTCACACCTGTAACACAACAGACCGCAATGCAATTTGTGTGAACTGCATCAAAAAGTGTCATCAAGGACATGATGTAGAGTTTATTAGACATGATAGGTTTTTCTGTGACTGTGGTGCTGGGACATTGTCAAACCCATGCACGTTAGCTGGAGAGCCGACACATGACACGGATACACTGTATGACTCTGCTCCTCCTATAGAGTCCAGCACACTGCAGCACAACTGAGTCTGTGACCTCAAGAGACTTCATACCACTCCTTAGTGATGTACCGCTGccctttttccattttcaatacGGTACCAACATCAGTGCTTTGAGGAGTGGCATAAATAAGCCGACTCTGCAAGCTTCTGTTACCAAATTACATAATGTTTCAGTACAATGGCACTAAGCTATGGTGTTTCAGATGTTCACATGCAAGGTCTATATTGTCATTGTTCACAGCGTAAATTGTCAGTGGATCAGAAGTGTGTCGGATCTGATCCAATATAAATCCAACAGATCAGATTGGTGGATCCCTAGCACTCCTCAATCCAGTGGtgaaattattttagaaataattcaatttcagtaATAATTTCACAAATTATAAACTCAGAACACTTCAAAAAGAAAGCGTAAGACAGAAGACAACTAATAATGCAAGCTATGAAAAGactagtatttaaaaaaaaaaaaaaaaaagcagccattCTCCTGGGATATAATAATTCCCCTGATTTGTTTTCCAAGAGAGGTGGATAGGTGATGGATGTAAACGTTGACTCATGAGCCACAGACTGATTTTGGGTAGTGCTAGAAAGAAACTTGGTAAAAGATTGCTGGTTCTTAACTGGAAAGAGCAGTCTTTCACCAATTTCTTAGCAAATGTCTCCAAGAATTTATTGCCACACTATGGTGTATGTATGGTGATAAATATGACCAGCActgcagcattttaaaaaaaataataataactggtATTCAATTTTAATGCTTTCTCATAGTTTTGTATTTTCAAGTGGAAATCTTAAATGTActtgaatgtttattttattaaatattaattttgggA

Function

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10297 FBXO11; F-box protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62001 lncRNA upstream 90701 25378353 ~ 25380775 (+) True G52456
TU61941 lncRNA upstream 178205 25293033 ~ 25293271 (+) True G52406
TU61883 lncRNA upstream 182889 25266913 ~ 25288587 (+) False LOC113542024
XR_004577847.1 lncRNA upstream 183494 25265631 ~ 25287982 (+) False LOC113542024
TU62058 lncRNA downstream 67869 25562402 ~ 25565205 (+) False golga4
TU62246 lncRNA downstream 349702 25844235 ~ 25846899 (+) False acoxl
TU62264 lncRNA downstream 356207 25850740 ~ 25864241 (+) False bcl2l11
TU62263 lncRNA downstream 357322 25851855 ~ 25864241 (+) False bcl2l11
TU62265 lncRNA downstream 357322 25851855 ~ 25864241 (+) True bcl2l11
XM_026939423.2 mRNA upstream 11730 25450538 ~ 25459746 (+) True LOC113542106
XM_026939297.2 mRNA upstream 85338 25365115 ~ 25386138 (+) True sirt1
XM_034301836.1 mRNA upstream 107459 25357389 ~ 25364017 (+) True LOC113541878
XM_026939503.2 mRNA downstream 20684 25515217 ~ 25538325 (+) True kcnk12
XM_034301217.1 mRNA downstream 67883 25562416 ~ 25594936 (+) True golga4
XM_034301219.1 mRNA downstream 67883 25562416 ~ 25594936 (+) False golga4
XM_034301222.1 mRNA downstream 67883 25562416 ~ 25594936 (+) False golga4
XM_034302617.1 mRNA downstream 102752 25597285 ~ 25672004 (+) True itga9
TU61306 other upstream 1413589 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 1665981 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 1774182 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 2015927 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 2356437 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 1491445 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 1703376 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 1703376 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 1703376 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 2952844 28447377 ~ 28448311 (+) True G53692

Expression Profile