RNA id: XM_026939502.2


Basic Information

Item Value
RNA id XM_026939502.2
length 1504
RNA type mRNA
GC content 0.46
exon number 3
gene id prokr1b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27412030 ~ 27421154 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaCTTCGTATTTCCTTCAGCACAAGAGGAGAAATGGGAAATTTTCCGGAATTCTTAGAAAAAGGGGTAATGTGTCTGatggttggtgtagaagaatgTGGAATCTGCCATGAAAACACCACCATCAGTCCTGACTGGTGCTGTGATTACTAATTGTGACCTAACATAACCTGACTAACCCAGGGAATGAAGATTTGAAGTGAAGACCaagaatttttaaacaaaaaaaaagccctcaCATCTTAATCATGGCAAACATTACGCATGTGGCAGTAATGTTTGTGGACCCCCACAGCCAAGTGCCCACAGATGAGCATGATCCCTACCTAGACCTTTATGATACGGACTATGGGATCCCAGCCGAGGAAATGCCGGACACCACTCAGGGCCTGGCTTATTTTGTGGCCACCATTGTTATTGGAGTTGTTCTTGTCTGCATCATGCTGGTGTGCGGCATTGGTAACTTCCTGTTTATAGCAACCCTGGCCCGCTACAAGAAACTGCGAAATCTCACCAATCTTCTGATCGCAAACCTGGCCATCTCTGATTTTCTTGTGGCTGTTGTGTGCTGCCCTTTCTTGGTGGATTACTATGTTGTAAAACAGCTGTCCTGGGACCACGGGAAAGTGCTCTGTGCCTGCGTTAACTACCTCCGAACTGTGTCTCTCTACGTGTCCACCAACGCCTTACTGGCCATTGCTGTGGACAGGTACATGGCAATCATTCACCCATTAAGGCCCAGGATGAAACATCAGACTGCCTACTGTCTGCTAACAGGTGTGTGGATTGTTCCGGTCATCATATCCATACCTTCTGCTTACTTTACTTCTGCGACCAAAGTGCCTTATGGTGCCAACCGCAGTAAAACCTTCTGCGCTCAGATCTGGACAGTGGACCAGCAACTTTACTACCGTTCCTACTACCTCTTCATTTTTGCCGTGGAGTTCCTGTGCCCGGTCCTGAGCATGGCCCTGTGCTACATGCGCATCTCCAGGGAGCTTTGGTTCAAAAGCGTCCCTGGTTTCCAGACGGATCAGATCCGGAAGCGTCTGCGTTGCCGGAGGAAGACAGTCATGGTGCTCATTGGGATCCTCACGGCATACATTCTCTGCTGGGCTCCTTATTATGGCTACACCATCCTGCGTGATTTTTACCCGACACTTATCTCCAGGGAGAAGAACTCACTGGTGGCATTTTACATTATTGAGTGCATTGCCATGAGCAACAGTATGATCAACACCTTCTGCTTTGTCAGTGTGAAGAATAACACAGCAATGTACTTCAAGAGGATTGTGCTGCTTCGCTGGAAGTCCACTTACACCTCTAGGAAGACAGATGTGAGGACACTGTCCACGCCTGTGTCTGAGGAAATTGATTGTATACAGCtgaggtaaaaaataaataaaattaaatttaaaaaaaataataaaatacctGTAGATTTGGAGCTGTCTTAAGCCACTGCAGATCCTAAGCAGAAGTGGGTCACCTATCTGTAAAGTTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08379 PROKR1; prokineticin receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63617 lncRNA downstream 43970 27367361 ~ 27368060 (-) True G53862
TU63597 lncRNA downstream 92408 27318088 ~ 27319622 (-) True G53851
XR_004577875.1 lncRNA downstream 97679 27305874 ~ 27314351 (-) True LOC117596885
TU63467 lncRNA downstream 158078 27226345 ~ 27253952 (-) True G53732
XR_004577888.1 lncRNA downstream 210132 27197359 ~ 27201898 (-) True LOC117596899
TU63459 lncRNA upstream 109422 27530576 ~ 27803450 (-) False G53729
TU63458 lncRNA upstream 109525 27530679 ~ 27532958 (-) True G53729
XR_004577818.1 lncRNA upstream 557290 27978444 ~ 28028256 (-) False LOC113542054
XR_003404251.2 lncRNA upstream 571133 27992287 ~ 28028255 (-) True LOC113542054
TU63967 lncRNA upstream 679219 28100373 ~ 28100589 (-) True G54201
XM_026939134.1 mRNA downstream 26519 27382304 ~ 27385511 (-) True cnrip1b
XM_026939077.2 mRNA downstream 31399 27366318 ~ 27380631 (-) True ppp3r1a
XM_026939075.2 mRNA downstream 51364 27355002 ~ 27360666 (-) True wdr92
XM_026939469.2 mRNA downstream 70913 27337048 ~ 27341117 (-) True perp
XM_026939395.2 mRNA downstream 165666 27229014 ~ 27246364 (-) True ifngr1l
XM_026939479.2 mRNA upstream 15991 27437145 ~ 27473721 (-) True pcsk2
XM_026939457.2 mRNA upstream 80508 27501662 ~ 27504308 (-) True LOC113542117
XM_026939512.2 mRNA upstream 97715 27518869 ~ 27525942 (-) True polh
XM_026939227.2 mRNA upstream 116615 27537769 ~ 27541331 (-) True zgc:163080
XM_026939225.2 mRNA upstream 127111 27548265 ~ 27560020 (-) True agpat5
XR_003404274.1 other downstream 1501911 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 2676143 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2760183 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2760183 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 3371930 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 116622 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 1012066 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 1780778 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2258257 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 2690677 30111831 ~ 30122655 (-) True G55209

Expression Profile