RNA id: XM_026939507.2


Basic Information

Item Value
RNA id XM_026939507.2
length 2053
RNA type mRNA
GC content 0.50
exon number 15
gene id eif3s6ip
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29782263 ~ 29788784 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTGAGTGCGCTTCCTTTTTCTCCCACTGCCGGTGGCTCGTGCGTGCTCGCGCTGTAGCACTCGGATTTCTGCGTTAGCATTTAACCCGGCGAAACACACTCAGGCCTTCATCATGTCTTACCCAAATGAGGACGATGACtatgaGCCATACAGCTACAGTGACTATGATCTCCACACTGGTGATCCCAAAGCGGATCTGGCATATGAGCGTCAGTACGAGCACCAGCAGACGTACCACGTCATCCCCGAGGTGATCAAGAACTTCCTGCAGTATTTCCACAAGACCATCTCTGACCTGATCGACCAGAAGGTGTACGAGCTGCAGGCCAACCGCGTGTCCAGCGAGAGCATCGAGCAGAAGATCTACGAGATCCAGGATGTCTATGAGAACAGCTGGAATAAGCTGACAGATCGTTTCTTTAAGACGTCTCCATGGCCAGAGGCAGAAGCTATTGCTTCCTTGGTAGGAAACGACGCTGTTTTCCTGATCCTCTATAAGGAGCTTTACTACCGACACATTTATGCCAAAGTCAGCGGCGGCCCAACACTCGATCAGAGATTCGAATCCTACTACAACTATTGCAACCTCTTCAACTACATTCTCAATGCTGATGGTCCTGCACCATTGGAGCTCCCCAACCAGTGGCTCTGGGACATTATTGATGAGTTCATCTACCAATTCCAATCGTTCAGCCAGTACCGCTGCAAGACAGCCAAGAAGTCTGAGGAGGAGATCGACTTCCTGAGGAACAACCCGAAGATCTGGAACGTGCACAGCGTGCTGAACGTGCTGCACTCGCTGGTGGACAAGAGCAACATCAACCGCCAGCTGGAGGTCTACACCAGCGGAGGAGACCCAGAGAGCGTGGCTGGAGAATATGGCCGTCACTCTCTGTATAAGATGCTGGGCTACTTCAGCTTAGTGGGCTTGCTGAGGTTGCACTCCTTGCTGGGGGATTACTACCAGGCCATCAAAGTTCTGGAGAACATCGAACTCAACAAGAAGAGCATGTATTCACGTGTGCCCGAGTGCCAGATCACCACCTATTACTATGTGGGTTTCGCCTACCTGATGATGCGCCGCTACCAGGATGCCATCCGAGTCTTCGCCAACATCTTACTCTACATCCAGAGGACCAGGAACATGTTCCAGAGGTCGACATACAAATACGAGATGATTAACAAGCAGAATGAGCAGATGCATGGGCTGCTGGCCATCGCGCTGACCATGTACCCCATGAGGATCGACGAGAGCATCCACACACAGCTCCGAGAGAAATATGGAGACAAGATGCTGCGCATGCAGAAgggAGACCTGCAGGTGTTTGAGGAGCTGTTCAGCTTCGCCTGTCCCAAGTTCCTGTCACCTGTCGTCCCCAATTATGACAATGTGCACCCAAATTACCACAAAGAACCATTCCAGCAGCAGCTCAAAGTGTTCGCTGAGGAAGTCCAGCAGCAGGCTCAGCTCTCCACCATCCGCAGTTTCCTGAAGCTCTATACCACCATGCCCGTAGCAAAGCTGGCTGGATTTTTGGACATGTCCGAGCAGGAGTTCCGCATTCAGCTGCTCGTGTTCAAGCACAAGATGAAGAACCTGGTGTGGACTAGTGGCATCTCAGCGCTGGATGGAGAGTTCCAGTCAGCCTCTGAGGTCGACTTCTACATCGACAAGGACATGATCCACATTGCAGACACGAAGGTGGCCCGCCGTTATGGAGACTTCTTTATTCGGCAAATCCACAAGTTTGAGGaaCTGAATCGCACCCTGAAGAAGATGTCCACATCTGGCACCTCTGGCTCCAGCAATGCCACATCACGATCATAACAGCGCTCGCtgaatttttcttcttctttttttttttttaaaattctttgcAATTAACCCAACTTTGACATTTACTAAAAGATGAGAAGCCTACCTTTTCTCACAGATATGATGTCTTTAGCCATCTTTCATATTTTCCAACCTCCAGCATCCAGTTTGCCACATAGACAGATTCTGAAGCTTTTTCGCGGGctggaaaaaataaagttgATGTGGTGAATATA

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15029 EIF3L; translation initiation factor 3 subunit L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64791 lncRNA downstream 73227 29705743 ~ 29709036 (-) True G54977
TU64790 lncRNA downstream 98738 29680123 ~ 29683525 (-) True G54976
TU64755 lncRNA downstream 142913 29631021 ~ 29639350 (-) False LOC113542002
TU64754 lncRNA downstream 142913 29638586 ~ 29639350 (-) False LOC113542002
XR_003404243.2 lncRNA downstream 142924 29631001 ~ 29639339 (-) True LOC113542002
TU64885 lncRNA upstream 84264 29873048 ~ 29876760 (-) False LOC113542120
TU64886 lncRNA upstream 84264 29873048 ~ 29876760 (-) False LOC113542120
XR_003404262.2 lncRNA upstream 84276 29873060 ~ 29876760 (-) False LOC113542120
XR_004577796.1 lncRNA upstream 84276 29873060 ~ 29876746 (-) False LOC113542120
XR_004577799.1 lncRNA upstream 84276 29873060 ~ 29876727 (-) False LOC113542120
XM_034303164.1 mRNA downstream 3194 29773385 ~ 29779069 (-) True dact2
XM_026939190.2 mRNA downstream 87200 29686730 ~ 29695063 (-) True zfyve21
XM_026939191.2 mRNA downstream 87207 29686730 ~ 29695056 (-) False zfyve21
XM_034301980.1 mRNA downstream 97399 29682545 ~ 29684864 (-) True LOC113541985
XM_026939311.2 mRNA downstream 1162238 28610623 ~ 28620025 (-) True flrt3
XM_034302579.1 mRNA upstream 90511 29879295 ~ 30111161 (-) True cdh23
XM_026939036.2 mRNA upstream 90511 29879295 ~ 30109520 (-) False cdh23
XM_034302580.1 mRNA upstream 90511 29879295 ~ 30109197 (-) False cdh23
XM_026939035.2 mRNA upstream 90511 29879295 ~ 30109197 (-) False cdh23
XM_034302581.1 mRNA upstream 174370 29963154 ~ 30109197 (-) False cdh23
LOC113541988 other downstream 100537 29679411 ~ 29681726 (-) True LOC113541988
trnae-cuc_11 other downstream 580260 29201932 ~ 29202003 (-) True trnae-cuc_11
TU64047 other downstream 1346852 28433220 ~ 28435411 (-) True G54269
TU63465 other downstream 2240964 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 3872144 25910018 ~ 25910119 (-) True LOC113542183
TU65059 other upstream 323047 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 323250 30112034 ~ 30122822 (-) False G55209
TU65060 other upstream 323538 30112322 ~ 30122655 (-) False G55209
XR_004577811.1 other upstream 364124 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other upstream 364703 30153487 ~ 30161223 (-) False khdrbs1a

Expression Profile