RNA id: XM_026939508.2


Basic Information

Item Value
RNA id XM_026939508.2
length 2751
RNA type mRNA
GC content 0.42
exon number 9
gene id plek
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27386257 ~ 27393196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTATCAGTTAGGCACCAGAAATAAAAGCTGCTGCGTGGTGCTGTGGTCTTCACATTTAACGTCCCTCGCTTTTGTATAAGCAGCTAAGCACAGCCAGTAGCTATGGAGCCCAACATCATCAGAGAGGGATATCTGGTAAAAAAGGGCACTGTGCTGAATTCATGGAAAGTGGTGTGGGTGGTGTTAGCAGATGATGCAATAGAGTTTTtcaagaaaaagacagacagcagTCCAAAGGGCATGATTCCATTAAAAGAAGCTGTGTTGACCAACCCGTGCCAGGACTTCAGCAAAAGAACGTTAGTGTTCAAGGTGACCACAGAAAAGAAGCAGGACCATTTTTTCCAAGCAACCCacctggaggagagagaggcaTGGGTGAAAGATATCAAGAGAGCCATCACTTGTCTGCAGGGCGGAAAGAAGTTTGCCAGGAAGTCTACCAGGAGGTCAATTCGATTGCCTGAATCAGTTAACCTGAGTGAGCTCTACGTTTTAATGAAAGACCAAGACACAggaattaaagaaatgaaactggaaaaagacaagAAGCTTTTCAACCACTGCTTCACTGGTGACACAGTGATTGACTGGCTGATCTCTCAGGGGAAGGCGAGGAACCGGTCTGAGGGTGTAATGCTGGCCACAGGGCTGCTGAATGAAGGCTATCTGCAGCCAGCTGGAGAGCTGTCTAAAGCAGCTGTGGAAAGCAGTGCGGAGTCTGCATTCCTGGACCAGCCGGATGCTCTGTATTACTTTGCAGAAAGTGGCTTCTTCTGTGAAGGCTACTCAAGTGATGAGGATGTGCTTGTAAAGGAGGAGTTCAGAGGAGCCATAGTCAAGCAGGGCTGTCTGATGAAACAGGGCCACAGACGAAAAAACTGGAAGGTGAGAAAATTTATCCTGAGAGATGATCCTGCATATATCCACTACTATGACCCTACCAAGGGCGAGGAGGATCCTCTTGGCTCGATTCACTTGCGTGGATCTGTTGTGACTGCGGTGGATTATGTACCAGATGCTAAGAGGCATGACATCGAGGGCAACTTGTTTGAGATCATCACTTCAGATGAGATACACTACTACCTGCAGGCAGCTACAGCTGAAGAACGCAATGATTGGATCAAAGCCATTCAAGTAGTGTCAAAGTCTGGAAAATAACTGCAAAAGACCACTTCAGTCCAGAAGTATCCTGACAAAAAAAGAGGACTCTTGTTATTTTTTGACTGTTAACAAACATTGTTATTTTATGTCATACACATGACAAAAATGTCTATGTTTCCCTTTTTACACAGCAAGTGTGCCAACTCAAAAAAGATTAAGATAAGAGACAGGATATGGAGCATGAGTATCTTGGTCTTTTATATCAATGATAATCCAGGAAACTGTTGAAATCTTCACAGTCcagccacttcctgtttctgtgaCCAAATGCATCGCTTCCTGTCTGTTCTACATTCTTGCCACTCTGCGGTTAGCCCATTGTATGTTGCcttacacttatcacttattaAGCATGTGAACCAGCTCCATTTATGGCATTCTAAATGAGGGGTGCACATTCAGTACAACAGTACAACTCCAACACTAAATCAATATGCCTTTCGTCAAGAgctcaggtaatgttcacaacaaacatcagaatcgggggaaaatgtgatctcggtgattttgaccatggcatggctattggtgccagacaggctcaTTGACAAAGAACAGcctctagagttcacacagaatggtgcgaaaaacaaaaataaacaccctGTAAGTGGcggttctgcaggcagaaacacctcaataactcaaaagttcaaaaataaatactacaaataaataggcaaaaatagtattaaataatattctgagcctaatatttgaatagtaatGAATGGTTTGAAAATAAACAAGGGAAATGGAATAGAAAAAAAGGGATATGTGTTGTGTAACAACTGAAACAGCCACCCACCTAGCTGTACTCTTTGCCAGCTGGATGATGATCTCTTTATGATATTAACCTCAAAATGCAAATGATGTGTGAGCATATGTTCATCATGGGCCTCATGTGGATCTCAGAATCTTACCAAGGGTTGAGGCAAAGTTGCTTGTGCACCCAAGTTAATGTGAGGAAAAACTAAGCTACCATTTAACACAAGATACAATAATTCACCCAACAGAGTATCTAATCCCCTGTTTATACATATTGTAATACAAAATACAGATAGGATCAGATGGCTCCTATTTAATATgcatatacaatatattgtgtgtaattaggatttttttttttgttctgtctgCCGAGCGTTGTCTGACTACCGAGGTCACTTTCCCAACACAAGGGGACGGTGTTCTGtcaaacacacatttgtgtaGCACAAGACCCTGAGAATACTGAAAGGCAACTCAATAAGTGATTTGATCCTTTGGAGTCATTTGATTCACCACTAAGAATAGCTACTGCATGACGAATAAGTGAACACAAAACAAGAATTTTTGAATAATTAGAATCATGTCAAATCACAGTATCACCAGCTAAAGGACACTGATACTGCTGAGTTGTGGTGGGACAACCAATGCCTTGTGAAAGAGATTTGATTTGATATAATCTAAGATAGGGGTTTTCAACCTGTGGGGTTAGAGGGCCTAAGCACTGATGAAGATTACAagatgaagaataaaaaagtgAGTGACTGCAGCTCAAGCCTGTAAGTTGCAAAAGAAATAAACTGCAGTAAACCTGTTTG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K19993 PLEK; pleckstrin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577721.1 lncRNA upstream 30584 27348910 ~ 27355673 (+) True LOC113541894
TU63096 lncRNA upstream 45161 27337047 ~ 27341096 (+) True G53402
XR_004577892.1 lncRNA upstream 113080 27261131 ~ 27273177 (+) True LOC117596902
TU63030 lncRNA upstream 142099 27242955 ~ 27244158 (+) True G53340
TU63002 lncRNA upstream 264318 27111544 ~ 27121939 (+) True G53312
XR_003404268.2 lncRNA downstream 134669 27527865 ~ 27530466 (+) False LOC113542161
XR_003404267.2 lncRNA downstream 134910 27528106 ~ 27530466 (+) True LOC113542161
TU63021 lncRNA downstream 166976 27560172 ~ 27562940 (+) True G53331
TU63329 lncRNA downstream 671447 28064643 ~ 28067481 (+) True G53614
TU63332 lncRNA downstream 707417 28100613 ~ 28100831 (+) True G53616
XM_026939076.2 mRNA upstream 20786 27360842 ~ 27365471 (+) True pno1
XM_026939044.2 mRNA upstream 38335 27342921 ~ 27347922 (+) True psmb1
XM_026939414.2 mRNA upstream 58602 27314533 ~ 27327655 (+) False tnfaip3
XM_026939413.2 mRNA upstream 58602 27318008 ~ 27327655 (+) True tnfaip3
XM_026939449.2 mRNA upstream 109928 27274516 ~ 27276329 (+) True olig3
XM_026939450.2 mRNA downstream 32646 27425842 ~ 27435989 (+) True LOC113542114
XM_026939324.2 mRNA downstream 114039 27507235 ~ 27517687 (+) True gtpbp2a
XM_026939325.2 mRNA downstream 114362 27507558 ~ 27517687 (+) False gtpbp2a
XM_026939226.2 mRNA downstream 139523 27532719 ~ 27537671 (+) True gsta.1
XM_034302633.1 mRNA downstream 204918 27598114 ~ 27997810 (+) True csmd1a
XR_003404257.2 other upstream 179012 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 179862 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 179887 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 393546 26985978 ~ 26992711 (+) True G53328
TU61306 other upstream 3328370 24055241 ~ 24057887 (+) True LOC113540163
TU63410 other downstream 1054181 28447377 ~ 28448311 (+) True G53692
trnav-cac other downstream 1712248 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 1714646 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 2319062 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 2544352 29937548 ~ 29941181 (+) True G55091

Expression Profile