RNA id: XM_026939513.2


Basic Information

Item Value
RNA id XM_026939513.2
length 1960
RNA type mRNA
GC content 0.42
exon number 10
gene id rnaset2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28101372 ~ 28107827 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTCGTACATCTGGCAACCATGTAGACAAACTCGGCACTCCTGGCTCAGCGTAAACATGTTTAGAGTCGGACGTTATCCACAAAGGCCATCACATGAGTGCGTTTGGAGAAGTTAATTAGTGCGTACTCGGTTATTTCTTCctcctttgcttgttttttttgctgtagtaTGATTTTTATCGCTTGTTTATTAACCACTCAGCCTCAGTCTTGAGGAAGCGCTTTTACACGCCACCTTTTTCACAGCAAAGTCCCACCAGTTAAACCAGGACTACACGGACAAACGGACCAGCCTGGGCTAATTGTTGAAGAAGGATGAAGTCACATGCCATCATCCTGTGTCTTGGATATGTCCTCCTGACATCAGCCCAAAGCAGTGCTAAGAAAGAATGGACCAAACTCATCCTGACTCACCACTGGCCACAAACGTTTTGCAGTATGGAACAATGCACTTCAAACTTTAGTTACTGGACCCTGCATGGATTATGGCCTAACACTGGTATTGAATGCAACGTATCCTGGCATTTCAATGCAAGTTTGATTGAGGACCTTCTACCAGAAATGAAGACATTTTGGCCAAATCTTCTTAAACCTGAATCTATAGTGTTCTGGAAGCATGAATGGACAAAGCATGGGACATGTGCTGCTAAAGCAGAGGCCTTGGACACTCAGCACAAATACTTCAGCAAAGCCCTAGAGCTTTACCACAAGCTGGACCTTGATGGCATTTTAAAGAAGAGCAATATCGTTCCCTCTGAAAACTACTACAAGCTAGCAGATGTGGAAGGAAGCATCAGCAATTCATATGGAGTAACCCCAAAAATTCAGTGTGTTTCCCACACAAAGgaaaGTGAGTTCCAGACCTTGGGCCAGATAGAGATCTGTTTTGACAGGCAGTTTCAGCTTCTCGACTGTGAAAACAGCATGGGTGAGCTTCAGAGTCGAGACAACGAAATTCTACCGTATGTCTCCAATGACCACCCAggattcagtgtgtgtgatgcctcTGTGCCAGTCTACTACCCTCCACTGCAGACGCCACGCTTTCTTTAAAGCGTTGAGGTCTGCAAAACTTGATGTGGTGCAATCGGATATGATGACACTGTAATTCACGCTTGTCCTGTTTGTGCCTGTTGAATATGAAGCTCTTGAGGGAGCAGGGTTTTCTTGACGTCCAAATTACAGTGCTAGTTTGGACAACACCTTGCAACATATGTGTGACCAGTGGACCTCCAGGTATAGGCTAGTAATTCTGTGCGTTCACATGTAGACCACTGGAGGTCACCACTTGCTCTGTCAATAACTCAAGCAGGCTGAAAAGTGTTTATGATGTTATGTAATCATTATGTTTTCACAATGTACTCAGTTACCTCATTTGGCTGTGGTACTCTGGTGGGgggtgtgcgtctgtgtgtgtgtgtgtgcgtctgtgtgtgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgttctgGGGGGGGGTAAGTGaaatataaacttttttccCAAATTAAGGAATGAATATCTAACCAGTATGAATTAATTTAGATTTATAATTATTACCCATGTTACGAGAATCGAATCCTTTTAAAACCAGTTCATTAAAAGCACATGAAGTTGTTCATTTTGTACACAGTTCATACTTAGTCTTTTACAGTACATTTAAGAGGATGCCAAGCAGTTGAGCTTCATAGGCAGTCATTAAGCTCAGAATGCTAATGTAAACCCTTAAcccactgtactgtaatatagtCTGGCTTATTATACACAATAAGCCTTATTGCTGGTTATGATTATGATGTTATCTCTCTTGTTCCAGAGTTGTTTCTTGTGTTTTCTCTATACTGAAAATAACTGATTGAAATTGGagatttttatttgcatatttatgcacACATTTCAAACCAGTATAGTGgaccgaaaaaaaaaataaaaagaagagctTTTCTTTA

Function

GO:

id name namespace
GO:0016075 rRNA catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0004519 endonuclease activity molecular_function

KEGG:

id description
K01166 RNASET2; ribonuclease T2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63332 lncRNA upstream 541 28100613 ~ 28100831 (+) True G53616
TU63329 lncRNA upstream 33891 28064643 ~ 28067481 (+) True G53614
TU63021 lncRNA upstream 538432 27560172 ~ 27562940 (+) True G53331
XR_003404268.2 lncRNA upstream 570906 27527865 ~ 27530466 (+) False LOC113542161
XR_003404267.2 lncRNA upstream 570906 27528106 ~ 27530466 (+) True LOC113542161
TU63383 lncRNA downstream 159894 28267721 ~ 28267965 (+) True G53665
TU63384 lncRNA downstream 160231 28268058 ~ 28268341 (+) True G53666
TU63394 lncRNA downstream 170031 28277858 ~ 28278072 (+) True G53676
TU63396 lncRNA downstream 182566 28290393 ~ 28290721 (+) True G53678
TU63349 lncRNA downstream 192006 28299833 ~ 28301492 (+) False pde10a
XM_034302633.1 mRNA upstream 103562 27598114 ~ 27997810 (+) True csmd1a
XM_026939226.2 mRNA upstream 563701 27532719 ~ 27537671 (+) True gsta.1
XM_026939324.2 mRNA upstream 583685 27507235 ~ 27517687 (+) True gtpbp2a
XM_026939325.2 mRNA upstream 583685 27507558 ~ 27517687 (+) False gtpbp2a
XM_026939450.2 mRNA upstream 665383 27425842 ~ 27435989 (+) True LOC113542114
XM_026939545.2 mRNA downstream 8933 28116760 ~ 28148448 (+) True rps6ka2
XM_034302897.1 mRNA downstream 13619 28121446 ~ 28148448 (+) False rps6ka2
XM_034302974.1 mRNA downstream 45301 28153128 ~ 28170154 (+) True sft2d1
XM_026939289.2 mRNA downstream 64102 28171929 ~ 28173521 (+) True prr18
XM_026939086.2 mRNA downstream 66841 28174668 ~ 28190525 (+) True si:ch211-130h14.4
XR_003404257.2 other upstream 894127 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 894977 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 895002 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 1108661 26985978 ~ 26992711 (+) True G53328
TU61306 other upstream 4043485 24055241 ~ 24057887 (+) True LOC113540163
TU63410 other downstream 339550 28447377 ~ 28448311 (+) True G53692
trnav-cac other downstream 997617 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 1000015 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 1604431 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 1829721 29937548 ~ 29941181 (+) True G55091

Expression Profile