RNA id: XM_026939514.2


Basic Information

Item Value
RNA id XM_026939514.2
length 3258
RNA type mRNA
GC content 0.46
exon number 24
gene id herc5.1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6604574 ~ 6620882 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCGGTGAGCTATAAACAAAGACAGGGCAGTATATAAGCAATGACTCTCCTAAAGCGAATCAAGCCACACAAGCAGACTCTACATCTTCACCATGTTGTGTTACTGGGGAGAAGCTGTAAAACCGGACGGGTTTGGCTTAGTGAAGGCTGACAGCGTGAAATTCACGGACACTGGCATTGGATACTTTTCTCCCAAATCCAGGATCAGGGATGTGTCTCCTGGGAAGAGTCTGGTGGGATTTATCCGGGGGGATGGAAATGCATCTGTCATGAGACTGAACACCAGAGAACCTGTCAAGTCTGGAAAACTAAAAACATTAGACCAGATGAAAGACAAAATCAGACTGATCAGCTGTGGTGATGTTGATGCTGTCCTTCTGGCATATGGAGACAGAATACTTTCTGTGGAGAAATCTAATGTTTGCAGGCCCATCAAGGAGCTCAGCAGTAAAACTGTAATTCAGGTTGCATGTGGAGACCAGCACTTCATGGCACTGACAAATGATGGTCAGTTGTTCACGTGGGGTCGGAACTCGAGCGGTCAGCTGGGTTTGGGGAAAGGTGAGCTGAGCTCTCTGTCTCCTCAGCCTCTCAAGTCTCTGTGTGGGATCCCACTGGCTCAGATCAGCGCTGGAGGAGACCACAGCTTcgccctgtctctctctggagCCGTGTTCGGCTGGGGCAGGAACAGCGCCGGGCAGCTGGGCCTGGGACATACGGAGGACGTGTACAGTCCAACCTGTGTGAATAACCTGAGCCAAAAGAAAACGATTTCCATCTCATGTGGAGAGGAACACACTGCTACTTTGTCAAAGgGAGGAGCAGTTTTCACATTCGGATCAGGTCGTTACGGGCAGCTTGGTCATAACACATTTAAAGATGAGCTTCAGCCTCGTGTGGTTACTGGGCTCTGGGGTATAAACGTGTCCCAGATCACATGTGGGAGGAATCACACTCTGGCGCTGGTTGAATCGTCAAACACAGTCTACTCATTTGGATGTGGAGAACAAGGACAACTGGGAAATGGGCAGAGGACCAATCAGTGTGTGCCACTTCCTGTACAGCTGCCACCAGCGGCAAATAACAGCCATACAGTCGAGAGCATCATTGCTGGCGGGAATCAATCCTTTGTCTTGTGCTCTTCCCAGAAATCTGATGTGCCTGACCAAAGGAAGGGGATTGTGACATTAGGAGACAAAATGATTCACAGATGGGTGTCCGAGTGTGAATCAAAACAGTGGAGGACAATCAAAAAGGAAATAAAAAGAGTTTTCTCATCTCCAGCTTGTATAAATGGAAGCTTCATTATAAAAAGttgtGATGGACATTACCAAACATCCACGCACGTCTCTGGTTTGGATTTGGACTCAGTGAAAACTGCTTTTGAGCGGTTGGCCGAGAAGGAGAGGGTGCTGTTGGAGGTAGAGAAGGTGGTAGAGAAAGATCTTCTCCCCTCTCTGGGCTTCACTGTTGCTGGTGTGGAGGCTCTGAGGGTTTTCCTCATCCTGCCTGAACTCCTCCGGGTGCTGAAGAAACAAGGACATGAGACAAAGCTCACATCATATGCTTCTGCCATTTTAAATCTGGATTCCTGTACGCGTACAGTTTTAGAGAACCTCTGGTCTGAACTCCCCGAAACCTTCCTCAAAACATTAGTGGAACTTTTTCACACTTCAGTTGCAGCAATGATATCTAAAGTGACATATGACTATAGACAAAAAATCGCCATGGATACACCATTACGTAAATCAGTGCAAGTCCTCCAGATGCTCTACAAGGCTACCTGTAGGAACCAAAGAGAAATCACACCTGGAGATTTCATCATCTATGAGATCAATGAGCTGTTTGACATGTTATATGCTATTCAGAAGGACATCGATGAGTTTTATGGGGGTTTTGTTTGGTATGGAGACCTTAATGTGACGGTGGCAGAAAAACAGCACCATATGAACACCTTAAAGCTTCTGAGCTCATGCCCTTGCATCTTTACTCTGGAGGCTAAATATGGCCTTCTAAAGTTCAGAGAACCTCGGGGACCCTTTAGAATGGAGTTAAGACGCACTGCACTTCTGGAGGACTGTTTCCGACAGCTGAGGGCCGCGAGCGAGCAAGCGCTGAAGGGCTGGCTGCAGGTGGTGTACTGTGAGAACTTCGAAAAGAGCGACGTCTATAAGAGGGACTTCTTTCACAATGCATTTAAGATGCTGTTGGATGCAGAATCGGAAATGTTCATGTACAATGACACAAAAACATTGATCTGGTTTCCTGTTGAgCTCAGTTTACCAGAGGAGAGATACTTTGTTCTCGGAGTCCTGTGTGGGCTGGCCTTTTACAACAACAGTGTTGTGCACATGCCCTTTCCTTTAGCCCTGTTTAAAAAACTTCTCGACATCAGACCTTCTCTGGAGGATTTTGCTGAGCTGAGTCCTATCGTAGCACAGAGTTTGCAGTACTTACTGAACTACAGTGATGACGATGCTGATAACATGTGCATGATCTACACTATTGTGTGGAACAACAGAGAGGTTGAACTGGATCCAGTTGAGCCTGGCAAAGCTGTGACAAGCTCAAACAAAAAGGTGTTTGTGGACGCGTATGTGGATTACGTGCTGAACAAGTCAGTGGAGAAGGCGTTTAATGAGTTTAAGAGGGGCTTCTACAAAGTGTGTGACAGAAACGTGGTGAACGTCTTCCAGCCGGAGGAGCTCAGAGGAGTGATGTTGGGCTCAGAGGAATACGACTGGGACGTACTCAAAATGAATGCGACTTATGAATACATATTTCATGCAAGACACCCAACGATTGTCTCATTCTGGGAAGTGTTTGAAGAACTGTCAAGCCAGGACAAGAAAGCCTTTCTCTTGTTCCTGACTGGGTTTGATCGAGTTCCCGTTCTGGGTATGGGGCAGGTGAAGATGACAGTGCGACAGCTGTTGAACTCCACACAGGATCATCTGCCCCAGGCCCTTACCTGCCATACCATACTGGATCTCCCTGTAtaccaaacaaaagaaatacttCGAACCAAGCTCATTGAAGCTATACACCACAGGAGAGGATTCTGGGAAGAATAAAATGATTGTGTCTCCACAAATTCCAAAGTTATATCATTTGTTACTGtgcttttataagaaaatgCAAACTCTGTTACCAGCGCTGTGTGTCTTAATACATACACCACAGGAGAGGATTCTGGGAAGATTAAAACGATGGTTTCTTCAAATTTCTGTCTTATAAAATTTGTCATTGTCTCA

Function

GO: NA

KEGG:

id description
K22372 HERC5_6; E3 ISG15--protein ligase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49367 lncRNA downstream 66024 6535704 ~ 6538550 (-) True G41731
TU49177 lncRNA downstream 232708 6371655 ~ 6371866 (-) True G41563
TU49084 lncRNA downstream 302486 6295232 ~ 6302088 (-) True G41491
TU48873 lncRNA downstream 728183 5876101 ~ 5876391 (-) True G41300
TU48715 lncRNA downstream 1003431 5599984 ~ 5601143 (-) True G41174
TU49415 lncRNA upstream 56248 6677130 ~ 6680273 (-) True G41768
TU49467 lncRNA upstream 173697 6794579 ~ 6797620 (-) True G41809
TU49606 lncRNA upstream 320358 6941240 ~ 6941458 (-) True G41938
TU49614 lncRNA upstream 391211 7012093 ~ 7012306 (-) True G41944
TU49679 lncRNA upstream 395883 7016765 ~ 7017405 (-) True G42008
XM_026939506.2 mRNA downstream 2430 6584785 ~ 6602144 (-) True LOC113542150
XM_026939495.2 mRNA downstream 21439 6566261 ~ 6583135 (-) False herc3
XM_026939478.2 mRNA downstream 21446 6550076 ~ 6583128 (-) True herc3
XM_026939486.2 mRNA downstream 21448 6549846 ~ 6583126 (-) False herc3
XM_034303131.1 mRNA downstream 212052 6384600 ~ 6392522 (-) True elmod2
XM_034302956.1 mRNA upstream 2587 6623469 ~ 6641622 (-) True LOC113541261
XM_034302955.1 mRNA upstream 23051 6643933 ~ 6659991 (-) False LOC117596878
XM_034302954.1 mRNA upstream 23051 6643933 ~ 6659991 (-) True LOC117596878
XM_026932741.2 mRNA upstream 79442 6700324 ~ 6716263 (-) True pkd2
XM_034302018.1 mRNA upstream 79442 6700324 ~ 6716262 (-) False pkd2
XR_004577821.1 other downstream 785061 5756711 ~ 5819513 (-) False gab1
TU48529 other downstream 1376651 5203706 ~ 5227923 (-) False lsm6
TU48528 other downstream 1376651 5225030 ~ 5227923 (-) False lsm6
XR_004577883.1 other downstream 1995124 4545584 ~ 4609450 (-) False dclk2a
trnah-gug_3 other downstream 3570021 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577908.1 other upstream 540592 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other upstream 540592 7161474 ~ 7204151 (-) False lef1
trnam-cau_1 other upstream 1846102 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 1847154 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 1848189 8469071 ~ 8469142 (-) True trnam-cau_3

Expression Profile