RNA id: XM_034303166.1


Basic Information

Item Value
RNA id XM_034303166.1
length 3311
RNA type mRNA
GC content 0.42
exon number 20
gene id eif2ak2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30345121 ~ 30352294 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcagtcgGGGACAGGTCTGTTCCAACGCATGATCTGATAATCGAAACTTAAACTCGTTTCTTCCACCCAAAACGAAAGTTAGTCACACGAATTCAGTGTTAAAGCACAGCTGGTTGTGTTTACATCTAACCGACGGGCCGGGAAcAGTCTGGGTTATTTCAAATCTTCTAAATGGACCCCGGGCAAAAGAATTACGTCGGTTTTCTTAATGAATACGCACAGAAACGAGGCTGGTCTGTGCGTTTTGATCTAGTGCAGACTGCTGGACCAGAGCACATTAAAACGTTTACTATGAGGGCGgtgatgaataataaaatatatcctGATGGAGTTGgacaaaacaagaaagaagCCAAACAAAATGCTGCAAAGAATGCCCTCAACTTTTTGGAAAATGATGACTCGGTTAATACAGAAACACATTTGTCCTCTTCTGCCAGAGCCTCACCTGTAACTCAAGCCAACTACATCTGCTGGCTGAATGAATACTCTCATAAGAAAAGATTAACTTTCAATCCTAAGGAAACCACCAAGATGAGTTCAGGCTCTAACATCCAagtGTGCTCGTATGCTTGTAAGTATGTCTGCGGTGATAAAGAATTCCCTGAAGCTACCAGCAACAGCAAGAAAGAGGCCAAGGAGGCAGCAGCAAAACTTGTTTATGAGATTCTTACAGAACAGGAACAAGAGCaaGTCCTTGATgaaaacagaaaggaagaaaatcTTAATATCCAAAACCTCAGCACCAGTCTACACCATCTAAAGCTGAGCACACCTGCAGATACTGAGaacacaacagcagaaaaaaacttCATAGGGCTCCTTAATGAATACTGCCAAAAATCTAAACAAGTACCCGATTTCAAAGCCGTGGACCGAAGAGGGCCTGCGCATGATCCCGAATTTGTATACAAggttgttataaataaaaaacaatatccCGAAGGACGGGGAAGGACTGCGAAAGAGGCTAAACAAAAAGCAGCTCAGCTAGCCTGGTTGGAACTTTGTGGCTCTGATTTAAGCAGTCAGatttcatCCCCATCCTCAATGAGTGAGTCAACAGATGATGTCAGCTCGTCACAGAAGACTCCTAAAAATCATAGTCAATCTGAGTCTGTCATTTTCGCAGACTTGTCTTCTACACCAGAACCACAACCTTTAGATGTTAAACCAAAACGACAACTAGCTGCAAAATTTCAGAATTCACCAGAGCAAtctaatattaatgtgctcaaaGTGGCAAAACCCTCAACAAAGAGTACCACAGTCTCCAACCATTCAACAAAATCAAGGTTTTTAGAGGAGTTTGATTCAATAACTAAAATTGGCAAAGGAGGTTTCGGACGTGTTTTCAAGGCCAGGCGAAAGCTTGAAGATACAAATTATGCTGTCAAGATAGTAAAGTTTAATGAGAAAGCTCGCAGAGAGGTCAGCGCTTTGTCCCGTCTTGTCCATGCTAACATAGTGCGTTACCACACATCATGGACTGAAGAGACTGCGTACAGAGATGAAGCATCAGAAACTTGCAGCACTTCATCCTCTGGCAGTGGATCAGAATTCCTCTATATTCAGATGGAATTCTGTGAAGGAGAAACTCTGTGTCAGTGGATTGAGGAAAGGAACAGTCACCCTAAAAAATACCCAGAACGGAGGCAGGAAGCAGCAGCGATAATAAAGCAGGTCTTGGAGGCAGTGAAATACGTCCATGTAAAGAAGCTCTTCCACAGGGACCTGAAGCCAGCGAACATAATGTTTGGGCATGACGGAGGCGTGAAggtgggagattttggacttgTTACCAAAGAAGAAGGAGATGATGATGGAAGTCTACTGGAACGCACTAAGAGAGTCGGAACTCGTTCTTATATGAGCCCAGAACAGGGACAACAAGTCTATGGCAGAAAGGTGGATATTTATGCTGTGGGCCTTATTTACTTCGAGCTGCTTTGGTGTTttggaacacacactgaaaaacaaaagCTATGGGACGATATACGAAATAAGACGTTTCCAGAAGAATTCtccaaaatgtttgattttgaacaCACGCTAATTGACCGAAtgctgtgtgaaaatcctaAGGGACGACCAGAAGCCAGGGATCTGCTCACAGAGCTGGACCAGCACACAGCCGCCACAGCCTGTACAGAGCACAACGTACAGAAAGTAAACAGAACATACTGATGGATGAACTTCACTCTCACACTTCAAGATAATATCCAGGAGCTCAGTGTGGAAGTGaacaacataaaatattaatatgtagaTAGCTTCCATGTGGCATTTTAATGATATCGAATAACGGCATCCTGTGGTATTTTCGCGgcactttatttgtttatgctAGATCTTTTCAATCATGCCACAGAAGCACATAATGTTTTATACAGTCTTTTAATGAATGTTTTAGCAAGGCTAGAAATCATGAATTCCATCTTAATAGCCATTTATGGAGTAGGTTATTAATGCTTTGTTGGAGAATGAGCAaacatatttattcaaattgtATTAAACTACAGCTAAATTGTTGGCATGATTATGGGAACCCCATAGGTCTGATCTTCTCTACAATTTAGTGAAATAGGTTTGGGTCTCAGTCTGAGTCACATCAGACTCAAGTATCAAAATACAccaatgtattattattatttaatatttctgttttgtgtttaaatcattACAGGATTCACATATAGGACTTATATGTGAATTCTCAATAGTGGTAAATCATGTATAAAAGATGGTCGCTTTCTGTGATCAAGAGAGAAGGGAGAACAGGTTTGTGCATCAGAGGAGAAGATGCGGTGAGACCAGGGACAGCAAAGGTCTCAGAAAACTCTTCAGACTGCAAAGATGTAGCAGTTGTtgggttttattttgttgtgttgcttttcctttttcatttttttccccatcagtgGACTCATGGGACATGGTGGCTTAATGCTTTGCACCCCTGGGGTGGGAGGTTTGAATTCCCCTCCCTGcatgcgtggagtttgcatgttctccccgtgtttcaggggtttcctccgtgTACTCCTGTCTCCTCCCCCAATCCAGAGACATGTGTTGTGGGCATTTCCACATTGTccattgtgtgtgagtgtgtgcacgaTTGttccctgcaatgggttggcaccctgtccagggtgtcccccaccctgtgccccaagtcccctgggataggctccaggctccccgtgaccctgtgtaggataaactgtacgtaggatggatggatggatggaatctGTTTTTGTGTATCAAAAACTGTGTTCATTAAAGAATACAACTGACAAGGACAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65129 lncRNA downstream 583 30340408 ~ 30344538 (-) False rsrp1
TU65128 lncRNA downstream 5271 30339477 ~ 30339850 (-) True G55270
TU65051 lncRNA downstream 144964 30198325 ~ 30200157 (-) False runx3
TU65077 lncRNA downstream 182151 30162751 ~ 30162970 (-) True G55220
TU65018 lncRNA downstream 295421 30048430 ~ 30049700 (-) False cdh23
TU65232 lncRNA upstream 3278 30355571 ~ 30414469 (-) True G55351
TU65230 lncRNA upstream 5661 30357954 ~ 30386396 (-) False G55351
XR_004577788.1 lncRNA upstream 45119 30397412 ~ 30401396 (-) True LOC113541972
TU65284 lncRNA upstream 120311 30472604 ~ 30477610 (-) True G55400
TU65286 lncRNA upstream 122443 30474736 ~ 30475855 (-) False G55400
XM_034303117.1 mRNA downstream 1537 30340399 ~ 30343584 (-) False rsrp1
XM_026939142.2 mRNA downstream 91665 30200153 ~ 30253456 (-) True runx3
XM_026939415.2 mRNA downstream 170001 30163347 ~ 30175120 (-) True chp1
XM_034302618.1 mRNA downstream 183897 30155087 ~ 30161224 (-) False khdrbs1a
XM_026939471.2 mRNA downstream 196197 30140946 ~ 30148924 (-) True LOC113542130
XM_026939174.2 mRNA upstream 16379 30368672 ~ 30377049 (-) True rhd
XM_026939476.2 mRNA upstream 94965 30447258 ~ 30458120 (-) False LOC113542134
XM_026939477.2 mRNA upstream 94965 30447258 ~ 30451390 (-) True LOC113542134
XM_026939520.2 mRNA upstream 270956 30623249 ~ 30642158 (-) True LOC113542166
XM_026939200.2 mRNA upstream 352721 30705014 ~ 30719700 (-) True fam204a
TU65130 other downstream 583 30340408 ~ 30344538 (-) True rsrp1
XR_004577811.1 other downstream 183898 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other downstream 183898 30153487 ~ 30161223 (-) False khdrbs1a
TU65057 other downstream 222299 30112034 ~ 30122822 (-) False G55209
trnag-gcc_2 other upstream 403113 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 499644 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_4 other upstream 508143 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577789.1 other upstream 1194067 31546360 ~ 31548633 (-) False LOC113541990
TU66090 other upstream 1211262 31563555 ~ 31600685 (-) True G56150

Expression Profile