RNA id: XM_026939519.2


Basic Information

Item Value
RNA id XM_026939519.2
length 4895
RNA type mRNA
GC content 0.43
exon number 9
gene id gfra1a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30920905 ~ 31006462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTGCCGCGTGCTGCCACTCCGGAGTTTTTTTGGAGACCTCGGAAAGCGATCCGCGTGTCTTTTTATAAACCTCCCCCATGCACGAGCAGCGCGAGACCACCCCGTCCCGGAGCGTCCCGATCCCGGAGCGCTTTTAAGGAACCTTTTGACCATCACTTTGTGCTTGCGGGAATCCCGGTGCGGGAAGAGGAGTGCGcgtgaggagtgaggagagaTGCTCAGATGGATGTAAAGAGCAGCGTGTGGGTCTGTAATCAGTGAGCtgctttttacacacacacacgcacacacacacacacacacacacacgcacaaacacgcacacgcacgcacggaGGACCGCGCGCTGGAAACGCGGATCGGACCCGCGATGATCGTCTCCACGGTTTGCGTTCTCTTTCCGCTGCTGGACGTCCTGCTGTCTGCAGAAAAGTCCGTGTTTGCTGCAGCGAGCCGGATGGACTGCGTTGGAGCCAGTGAGCTGTGCTTAAAGGAGCCGGGATGCAGCACCAAGTATCGGACTATGAGGCAGTGCATAGCGGGGAAGGAGGGCAACATCAGTGCCGAGGGGAGGGACGAGTGCCGCAGCGCCCTGGACGCGCTCAAGCAGAGCCCGCTGTACAACTGCAGGTGCAAAAGAGGcatgaagaaggagaagaactGCCTGCGCATCTACTGGGGACTCTACCAACATTTACAAGGAAATGATCTACTGGAGGAATCTCCTTACGAGCCCATGACTAGCCGTGCATCAGATATATTTCGATTGGCACCCATCTATTCAGGTGACCCTGCTCTAGCCAAGGAGAACAACTGCCTCAATGCAGCCAAGGCGTGCAACCTGAATGACACGTGCAAGAAGTACCGCTCGGCCTACATCAGCCCGTGCACGAGCCGCGTCTCCACGGCCGAAGTGTGCAACAAGCGCAAGTGCCACAAGGCGCTGCGTCAGTTTTTCGACAAGGTTCCTCCCAGACACAGCTATGGCATGCTGTACTGCTCATGCCCTCCAGGGGACCAGTCAGCCTGCTCCGAGCGTCGGCGCCAGACCATCGTCCCCGCATGCTCCTATGAGGACAAGGAGAAGCCCAACTGCTTGGCACTGCAAGCCTCCTGCAAGACCAACTACATCTGCAGGTCACGTCTAGCGGATTTCTTCTCCAACTGTCAGCCTGAGCCACGTTCTCTTTCTGGCTGTCAGAAAGAGAACTATGCTGATTGCCTACTCTCCTACTCGGGCCTCATTGGGACGGTGATGACTCCAAACTATCTGCGATCCCCTAAAATCAGTGTGTCGCCGTTCTGTGACTGCAGCAACAGCGGCAACAGTAAAGAAGACTGTGAGCAGTTCACGGAGTTCTTTACTGACAACGCCTGTCTGCGTAATGCCATTCAGGCGTTTGGAAACGGGACAGATGCGAGCGTGTGGCAGTCGGCTCCAGTGCAGAGCACCACGGCCGTGATCACTCCATCACACAGAGGTCGAGGACGTGAGAAATCACCCAACTCCCTGGAGCCGGACCTGCACGGCAACCGCCTGAACCCTGGAGACAACTCACTGTATCAGTTCTGTGGAAACCTGCAGgcaCAGAAACTGAAGACCAATCAAACAATAGATGTGTTATGTGTGGACCCTCAGATCAACCCCAGCTCCTCCAACTCCATCTCGGGGAACTCAGCATCTCCGTCAGGCTTTAGCActctgctgctcctgctgctcagCTCTTTGCACTGCTCCCTGGCACTCCTGCTACCCAACCTGGCACTGCTGTTGTAGCCACCTGGCCAATGCAACACATGGACGCTcgtaatttgtattaaaaaaaaaaaatctctgataTATGTTCCAGGTCTACCTGTTGTAATCAccttctctcactgtctcctctCAGTGTTTTTACAGCTCTGAGTTTTATGAGCTTTGGTTTATGCGAAAGGGATTTCAGTGTAACTTGATTTTTCTCTCCGTTCCCTGTTGGGATTTTTCTGTACCTGGAGATGAACAGTGAAAAAGGATGTGCAAGATTTGTTCTTGCAACTTTCGAGACGAACCACAGGCTGGTCTCGGGGGTGAGAGATCATTTGAAATGGTGGTCAAGATGAGTGGGGGCAGCTTTCTTAAGTGTTTGACAAATctcatctgtgtttttttgcgTATGTTGTGTGCGGTACGATATGCATTGACTTCTAACTGGCACACAAAACAGAGGCTTACTGGGAGGTTTTGTCAGTTTCGAGCCTTTTTCCCCACTCttagcataaacacacataGTGTCAGAGACTTGGAGTAACTTTTGGAGGCACACACAAAGTCCAAGGAAGAGTTGATTGCTGGGATTCCTGTTGTGCATGATTATTCTTATAAAATGATTGatttaatctgattattttgGGGGAACATAGCTATTCATATGTGTTCAGTATATATTTTGAGATCGTACTTTGGGTCAGGAAGAATTTTTTTGGGGAGTGTTTGAGCACAGAGAGTCTgaaagagtgtgttacagtgcctGGGTCAGTTTGGCAGTACCAGTTAAACTGCACTGAGCAGAGTGCCTCCAAGTCTATTAACAGTCACCAGTGTTGTATATGATTTCCTCAAACTCTTACATTCTCTCTCCTATGAAACTCCACTGTAATTGTAGCTGTCACCAGTCCAAACTCATCTGTCCTCAAAGTGCACATACATAATGCCTTTACAGTGTAGACCATGCTTGGACCCTTTGCGTCCAAATGAAATACCGTATGTATATTatagtgttctttttttgtgttgtaaTTCCAAGCATTACAGAAGGAGGCTGTGTTATGGCTGTATGCTCAAACCAGATCTTGATCTTAATCAATCCGAAGGTTCGACTTTAAAAGTTTCCTTTGAAACGAACCAGAAAAGCGATACACGCTCACAAAAGCATGTGCAGCTTTAACAGCCGTTGCACATTCGAAGCATTTATGACATGATGTTTGGCTTTTTTAACGGAAATAACACAAGAAATGCATTAATGCATTGCTCTCTTTATTTACAGGGCATCCAGATCTTATTAAGAGacttatttacttaaaataGACTGAGAAAATATGAATTTTGATTTGATAATGCAACGTCTTATCCTACTGCATAAGGTCATAATGACTTGTTTAGataaacatatactgtatacaccaTATAAAGGAATAGACTCCACCTATAATGACTGCTGCCCCAAAGTGTACTACAGAGATTTAATTGAATACTAAACTAttgtttaatggtttaaaaaaaggaagggaaaagtaaagaaggggaaaaaaactcttATTTTTGTATCTTTTGCATTGTGAGTTTTCTTTATCACAAAACTCTTGCCCGTGCTAGCAACAAAGTTATACGAGTTATAACTGTTGCAGTAAAGCTTTTACAGATGGCATTAGCAGGTCTAGATGGGCATTTTAGGGGCAGATGCATTGCCCTGCTGTGCATTAAAGGCTACACTGAGTGTACAAAACACAATACTTCTGGACATTACAGGGCATTTTCTGACTATTTGACTCTCATTATGGCCATCTGCTAATCTGCACAATTCATTTCTCTTTCAACAGTTGGCCCTTTTCATCTTTGGTGTGCTGGATCATTCGGGATACACAGTGATGTGCTTAAAAAGGTCCCAGCATTAATCGCATTTTTATCTTTTGCCTCAATCCATTGGCATTTCTCTATATTTTTTGTCTAAATTCAGTTTCATTACTGGAGAATATAAATACCAAGAAGTATTAAGAAGTATAAAAATAGCCAGAACTGTTACTTATCctacaaaaatatttcagatgtaTCCTATAGAAACACCTATACTGGCAAATTCAGAATTAATGGCACCCTccttcaaaatgacaaaaaaatgcaacgAGGGATGTTACAGTAAGCTTGAACATATAGGAAGGCTATATAGTTTAATTTTAAAGTATGTTTGTTCTCACGTCACTAATCATACCAGAGAgagtaaatgaaattaaaataaatctatgaaagtctATGAATACTCCTTTTTAATACTCTACCTTTTCTTCATGAgatgccttcagctaaatattttacataactGCATGCGATTGGCTGCAACAAGCCACAACAGAGGATATGTTACAGAAACTTTACAGAAggttcatgttttttaaaaaaaaaaacagagtcaTTAAACtatggacagtttttttttaagacattgatcagttctgctacagtattttcattcttttaagAATGATTCTTTGCTAGAGGAAAGGTAAATCATTTCTACAGTTgttgtatatgtttattttatacaattacattttttgacatatatattttgatattcCCTTGACAAGTACTAATAATTCTCGAGTTCACAGTAGCTAGTTTGCATCCTCATTTGTCATGGCTTGAAAGTTCCTAGTACTAAAGGCAAGAACACAGCACCTCTCAAATGGTTACAGGAATATTCttcattcttgttttttctttttttttcttttcaagttTGTTCTTACAAGGTCATTTGCAAACAGTTTTCATCCATTTTTCACATTCTTGGTACTGATAAACAACCTCTTTGCCTGCCTTCATTTATACTTATCAAAGTGGATGTACCCGTAAAATCAAATAGAGATTGTAGTATTATACAGCTAATCAGTTTCAAGAAATAAGCACACTTTTCCAGTGTTCTGCACACTCAGTGTATGCTGCAAAATTTGCGTCAGAATgtggtaaaaaagaaaaaaaaatcttacatgCCCACATTATACTGGTCGATAAAATGAATGACTTGTtcttgtttataaataaaaaggtttccCCTCTGACATATTTCTTCCTAGCttgtgaaaatgtacaaataaatattatatgaaaactgattaaaatggtGACTCATTCAA

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65343 lncRNA downstream 297700 30619177 ~ 30623205 (-) True G55449
XR_004577790.1 lncRNA downstream 302718 30593157 ~ 30618187 (-) True LOC113542125
XR_004577791.1 lncRNA downstream 302720 30593157 ~ 30618185 (-) False LOC113542125
XR_003404263.2 lncRNA downstream 302721 30571345 ~ 30618184 (-) False LOC113542125
TU65916 lncRNA upstream 316692 31323154 ~ 31323464 (-) True G55992
TU66118 lncRNA upstream 626633 31633095 ~ 31633326 (-) True G56173
XR_004577870.1 lncRNA upstream 650589 31657051 ~ 31675951 (-) False LOC117596876
XR_004577871.1 lncRNA upstream 650589 31657051 ~ 31675951 (-) True LOC117596876
TU66258 lncRNA upstream 680801 31687263 ~ 31687472 (-) False fndc5a
XM_026939161.2 mRNA downstream 167227 30746232 ~ 30753678 (-) True LOC113541964
XM_026939200.2 mRNA downstream 201205 30705014 ~ 30719700 (-) True fam204a
XM_026939520.2 mRNA downstream 278747 30623249 ~ 30642158 (-) True LOC113542166
XM_026939476.2 mRNA downstream 462785 30447258 ~ 30458120 (-) False LOC113542134
XM_026939477.2 mRNA downstream 469515 30447258 ~ 30451390 (-) True LOC113542134
XM_026939480.2 mRNA upstream 16199 31022661 ~ 31025845 (-) True si:ch1073-126c3.2
XM_034303155.1 mRNA upstream 512578 31519040 ~ 31524900 (-) True LOC113541870
XM_026939213.2 mRNA upstream 539439 31545901 ~ 31548633 (-) True LOC113541990
XM_026939215.2 mRNA upstream 607140 31613602 ~ 31620331 (-) True slc30a10
XM_034302651.1 mRNA upstream 671921 31678383 ~ 31830932 (-) False fndc5a
trnag-gcc_4 other downstream 60399 30860436 ~ 30860506 (-) True trnag-gcc_4
trnag-gcc_3 other downstream 68898 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_2 other downstream 165429 30755406 ~ 30755476 (-) True trnag-gcc_2
TU65130 other downstream 576367 30340408 ~ 30344538 (-) True rsrp1
XR_004577811.1 other downstream 759682 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577789.1 other upstream 539898 31546360 ~ 31548633 (-) False LOC113541990
TU66090 other upstream 557093 31563555 ~ 31600685 (-) True G56150
TU66257 other upstream 821352 31827814 ~ 31829484 (-) True G56272
TU66291 other upstream 830720 31837182 ~ 31838235 (-) True G56303
XR_004577843.1 other upstream 1233139 32239601 ~ 32289607 (-) False brf1a

Expression Profile