RNA id: XM_026939523.2


Basic Information

Item Value
RNA id XM_026939523.2
length 1666
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC113542170
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26001430 ~ 26011780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTAGGTTAGGGGTCGGAAACGTCCTGCTATGTGACTTAAAGAGGTCAAAGTGAGCGGAAAcggagacttttattttgaaattcgGTTTACAAGGAAGTAAGAACGTGACCGGATTGTTGTCGTCCTGTAGTAAGAAAGCGTGGTAGGTTACGGGACGGAAACGTCCTGCTATGTGACTTAAAGAGGAAAAAGTGAGTAGAGACCTTCTCGCCATGGCTGTGGCCTGTTTCTCTAAGCAGCTGCTCAGGTGCGCTGGATTTAAGCTAATAGGAAAGCGCGCGAGACCGGTCATTAGAACTTTGTGTAATCACGAGCTCAGAGAGCTGACGCGCTGCAGTGCGCGTGAAAGCTCCATCTCCCGACGCGCGAGCTGCTCCAGAAACTTCCATACAACAAACTCAGCAATGGTCCTGAAGATCCTGACAGCGGATGAGATGTTTGCCCGGAAGTCCCTGCAGGACTACCTGAGAACAGTGGAAACGGAGTATAACGAGTGTCTCCGCGCTGTCAGTGCTGCAGACCTGCAAACAGACGATGAGGAGCTGAGAGCAAAGAGGATGAGAGTGAATGCTTTAGGGCCTCTGGTCCAAAAAATCAGCGAGCTGCAATCAAAACAGAGGGATTTTGAAGAGACCGAGTCGTTACTGAAagAAAATGATCCTGACTTGCACGAGcttgcagagacagagagggagcaCTGCCTGGCATCCATGCAAGAAACGAAACAAAAGaTTCTGTCTCTTCTCGTCCCTGAGGAAGAATCAGACATGAGCGATCTGGTCCTAGAGGTCACTGCTGGGATTGGAGGTCAAGAGGCCATGCTTTTTACAGCAGAGATATTTGACATGTATCAGAGCTATGCTGCTTTCCACGGCTGGGGCTTTGACACACTGGAATACATGCCAAGTGATATAGGGGGTGTACGACATGCCACAGCCAGCATCAGTGGTCCACTGAGCTATAAGAAGATGAAGTTTGAAGCAGGCGTCCATCGGGTCCAGAGAGTCccaaagacagagaaacaagGCCGCATGCACACCAGCACTATGACCGTAGCAATATTGCCACAGCCTGCAGAGATCTCCTTCACTATTAACCCCAAAGACCTGAGGATTGAAACGAAAAGAGCCAGCGGAGCTGGAGGACAGCATGTTAACACGACTGATAGTGCTGTTAGGATTGTCCATTTACCAACAGGCACCGTGTCTGAGTGTCAGCAAGAGCGCTCCCAGATCAAAAACAAAGAGAAGGCCATGAAGCTGCTGCGGGCCAAGCTCTACAGTGCAAAGCTGGAGGAGGAGACGAGTAAGAGATACCAGGCCCGCAAACTCCAGATTGGCACCAAAGGCAGATCAGAAAAAATCAGGACCTACAACTTTGCTCAAGATCGAGTCACTGACCATCGGATTGGGAAAACCCTGCATGACGTACATGGATTTTTATTAGGAGAGGAGCTGCTGGACGAGATGAGCATGTTTTTGCAGCAGTTTTCCGAACAGGAAGCTCTCATGGACATTCTTGAAGTTTTGTGGTGACCAAACTGTAAAGGCACAGCTATGAAGTGCCTGAACCGCAGAAGAGCTTCAGCGGCGGAAGCGGAAACGGAAACGAGCGCCGGGTTAAAGGGACTGAAGAAAAGCGCGCCATCTTCCAGCGTGccttcc

Function

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG:

id description
K02835 prfA, MTRF1, MRF1; peptide chain release factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62392 lncRNA downstream 82075 25889508 ~ 25921064 (-) True G52775
TU62409 lncRNA downstream 86188 25915462 ~ 25916951 (-) True G52792
TU62388 lncRNA downstream 137052 25865886 ~ 25866087 (-) True G52771
TU62373 lncRNA downstream 156247 25843285 ~ 25846892 (-) True G52759
TU62375 lncRNA downstream 157026 25843012 ~ 25846113 (-) False G52759
TU62635 lncRNA upstream 105108 26116888 ~ 26117206 (-) True G52981
TU62707 lncRNA upstream 238575 26250355 ~ 26286280 (-) True G53047
TU62704 lncRNA upstream 241565 26253345 ~ 26288933 (-) True G53046
TU62709 lncRNA upstream 246650 26258430 ~ 26262823 (-) True G53049
TU62708 lncRNA upstream 262136 26273916 ~ 26276092 (-) True G53048
XM_034302838.1 mRNA downstream 36165 25923030 ~ 25966974 (-) False anapc1
XM_026939278.2 mRNA downstream 36165 25923030 ~ 25966974 (-) True anapc1
XM_026939300.2 mRNA downstream 211739 25772887 ~ 25791400 (-) True lhcgr
XM_034302898.1 mRNA downstream 233093 25750053 ~ 25770046 (-) True mertka
XM_026939067.2 mRNA upstream 55194 26066974 ~ 26073754 (-) True LOC113541884
XM_034301629.1 mRNA upstream 55194 26066974 ~ 26071989 (-) False LOC113541884
XM_034302953.1 mRNA upstream 64812 26076592 ~ 26110409 (-) True tmem63ba
XM_034302699.1 mRNA upstream 338349 26350129 ~ 26351151 (-) True LOC117596837
XM_026939275.2 mRNA upstream 354398 26366178 ~ 26467381 (-) True wdr11
XR_003404274.1 other downstream 93020 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 1267252 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 1351292 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 1351292 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 1963039 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 1525996 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 2421440 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 3190152 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 3667631 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 4100051 30111831 ~ 30122655 (-) True G55209

Expression Profile