RNA id: XM_026939524.2


Basic Information

Item Value
RNA id XM_026939524.2
length 1585
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC113542170
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26001430 ~ 26011780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTCTGctgagctctgattggtcagcgcGTTTTTTGACGCGAAATTCAAACTATGTAGTAACTGGCGCTTTTTCCCTCCCTGATTTCATTAGTCAGTGGCGTCTGGATTTGACCGCGTAAACCGACAATGCTGAGTTAGTGTACAGCAGTCCGCGCCAGAACAGTTACCTAAATTTGCAAGACTCGTGTAAAAAAACCTGGAGCTTTATTTTCGAGTTTTGTGGTGACCAAACTGTAAAGGCACAGCTATGAAGTGCCTGAACCGCAGAAGAGCTTCAGCGGCGGAAGCGGAAACGGAAACGAGCGCCGGGTTAAAGGGACTGAAGAAAAGCGCGCCATCTTCCAGCGTGccttcctccatctctcagcACCTGGACAGCGAGCCCAAAGGGCCTCATAACAAAGAGAACTGCAGGGAAAAGCCCTGTTCTGTAGAGGTGCTGTCTGATGATGAGGTGCTCCTGAGCAGCTCCAGTCTCACAGAAGACAGCGGCTATCTGTCCCTTCACAACAGCCAGCTTGAGCACTGTGATGGAGACACACATTGTATAGAGACTCTGGAGAAATGCACAGAGGCAAAAGACTGCACACTGTCTCCAATTCATTCAGACTCGAAATCAAGTTGCCTTCCTGTACTGAAGTTCCAGGAGGAGGTATGCAAACAGCTGGCCAAAGGCTACAGGAAAAGCCAAAGCTATGACTGGACTGTGATTAATAAGCTAGCTGAGCGTTATGGTCTCCATAACATCATTGGTGCAAAGATGGGCCTGGAGTATGTAGATATTCTTTGTGGCTTGTTGAAGAAAGACATGAAGCACATCCTGACCAGGATCTTGGGCTTACTTGGAGAGTGTGACTTGATAAACTGTAAAAAAGTGAGCAAGACATGGCGGAAAATCATTCACCAAGACGGGAGAGCCGTTCAGAGATGCAAAAATGCAGAGCAAATGCCAAGGGACTCCAGAAGGTCGACAGAGTCTTTATCCAGAGACTTTGGCCTTAACAGGGTGGTATTTTCTTACCTACAGAGTGTGGCCTCCTCAACACCAGGGCACAAACCCACGAAGAAGACCCACAGCCAAACAGACAGCATGAGAAACGCAGCCAAGCCAAGCTGCTTTGCCGATTTTCACGAGGCTACTAAAACCCTGAAAGGGCACGAGGCGCTGAGGAGTTGCCGTCTCTGTGGTTCTCCCGCACGGTTCGACTCGGCCATGAAAAGGGCGGTGTGCATGCGGGCTAGCTGTGCTTTCGACTTCTGCTCGCTGTGCCAGTCAGCGTACCACGGGTCCACACCATGCCCGAGGGGCATAATAAAGGCATCGTCATCACACTGCCAGACCGCTCCGCTAGCAGGTTCCACTCGCAGCAAACGCAGCATCCGGCGCCTCTGAGTTCCACTAACTCAGGAAACACAAtttgcacctttaaaatgaGCCTTTATTTCTTCAGAATTCTTTTATAATAGTTTTATAATGTGGACGTTTTATATATTTCTCAGTGTCCTTATTGTGAACCGATGCAGGTCACTTTGTCTGTGGTCCTAGCATATGTTTGTAATGTACtgaatgccaaaaaaaaaaa

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0051276 chromosome organization biological_process
GO:0060565 obsolete inhibition of APC-Cdc20 complex activity biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0005819 spindle cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62392 lncRNA downstream 80366 25889508 ~ 25921064 (-) True G52775
TU62409 lncRNA downstream 84479 25915462 ~ 25916951 (-) True G52792
TU62388 lncRNA downstream 135343 25865886 ~ 25866087 (-) True G52771
TU62373 lncRNA downstream 154538 25843285 ~ 25846892 (-) True G52759
TU62375 lncRNA downstream 155317 25843012 ~ 25846113 (-) False G52759
TU62635 lncRNA upstream 112579 26116888 ~ 26117206 (-) True G52981
TU62707 lncRNA upstream 246046 26250355 ~ 26286280 (-) True G53047
TU62704 lncRNA upstream 249036 26253345 ~ 26288933 (-) True G53046
TU62709 lncRNA upstream 254121 26258430 ~ 26262823 (-) True G53049
TU62708 lncRNA upstream 269607 26273916 ~ 26276092 (-) True G53048
XM_034302838.1 mRNA downstream 34456 25923030 ~ 25966974 (-) False anapc1
XM_026939278.2 mRNA downstream 34456 25923030 ~ 25966974 (-) True anapc1
XM_026939300.2 mRNA downstream 210030 25772887 ~ 25791400 (-) True lhcgr
XM_034302898.1 mRNA downstream 231384 25750053 ~ 25770046 (-) True mertka
XM_026939067.2 mRNA upstream 62665 26066974 ~ 26073754 (-) True LOC113541884
XM_034301629.1 mRNA upstream 62665 26066974 ~ 26071989 (-) False LOC113541884
XM_034302953.1 mRNA upstream 72283 26076592 ~ 26110409 (-) True tmem63ba
XM_034302699.1 mRNA upstream 345820 26350129 ~ 26351151 (-) True LOC117596837
XM_026939275.2 mRNA upstream 361869 26366178 ~ 26467381 (-) True wdr11
XR_003404274.1 other downstream 91311 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 1265543 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 1349583 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 1349583 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 1961330 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 1533467 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 2428911 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 3197623 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 3675102 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 4107522 30111831 ~ 30122655 (-) True G55209

Expression Profile