RNA id: XM_026939529.2


Basic Information

Item Value
RNA id XM_026939529.2
length 3861
RNA type mRNA
GC content 0.42
exon number 5
gene id fam83b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26873228 ~ 26887079 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAACAGGTCTGTTGCCTGTGGCCAGGGAGAACGTTTCAGTTTTATGAATCTCCACCCATTCTTCTTCCCAGCACTTTTCAAGTTGTGACATCTCCggttcttttttgtttcctgCCTTCACTCGGCAGCAGTAAAGATTCATATTTCTTTTCAACTCTTCAACATTTAATCTCTATTAGAAATGGATTAGAATTGGATAGAAATGCATTACCAACACTCCAGAGGATCTTCCTGTAACTGACCGTTCAAGTGGTGGCTACTAGTCTGCTATTTTGAGGAGAGATGATCCAAGGCCCAGGCATAATGGAATCCAATCTATCTATGCTCTCATCCTTGAAAGAGGACTTCAGCACTGAGGATTTCATCCTGCCACATTATAAGGAAGCTTATCGGCTAGCCATTGACTGTCTTGTCAGTGGTGGCAAACAAATATATCAAGAATTCATCCAAGCTGAGAAAATCGCAAGCTTCCTTTCTGAGGATGAGATTGACTTCATAACACAGAATACAGAACAACTACCTGTCAGTGAAGACATAGAGGAGGTAGAGAGTCCCAGGGATGAGGAGGCCTCCACAGGGACATACTGGCCCACACATTCCGATGCTGCTCCTCCAGACTTGGATCTCGGTTGGCCAGAGGTCATGCACAACAGACTCCAGACCAACATAGACCTGCTTTACCATCCACCCAGGTTAAACAGCCCCACCATCAAGGAGGTATTGAGGAAAAATATCCAAGAAGCTAGACAGGTCATTGCAATTGCCATGGATGTGTTTACTGATgtagacatttttaaagagGTAGTCGACGCATCTATCCGAGGTGTTCCCGTGTATATCCTTCTGGATCACATTCATTTCAAAGGCTTTCTCACTATGACTGCAAACCTTGACATCCAAATTCAAAGACTCAGGAATATGAGGGTGCGCACAGTGCAAGGCCAGGAGTATGTTTGCAAATCAGGAGCCAAATTCCGTGGAGGCATGGGACAGAAATTTCTTCTAGTCGATTGCCAAACAGTGTTTTTTGGATCATACAGTCTCATGTGGTCCTGTGAAAAGATCCACCTGAATATGGTTCAAGTCATAACCGGTGGGTTAGTGGAGTCTTATGATGAGGAGTTCCGGACTCTTTACGCCCGCTCCAAAATTCCAGTTGAGCTCCAGTCTCAGGAAGTCTTGCCAGAACGAAGGATCAATGGCAAAACTGAGAATTACCTTGGCCATCCCATCAGACCCTTTCAAAGGAAGGATAATTTGAGGCATACACTTGACTCTGTGTATCGACAAACCTGTGAAAGACAAGCAGGCCTTAAGAGCACGATGGAAGAGCTTCATATGCCTCACCATAGTAGATTTCTTCAAGACGCATTGGAGTTCAACAAGCGGCACAGCTATGCAGGGGAGCAACGGGAGCTCTCACACATTATTCAGCACCCCAGGTATGGCGCCAGTAACTGGAATGTGGCAGAAGATATCAGGCGTTATGGGGGGAACTACTCTGCTGCTATGGAGAACCCCTATGAAAGCTCCAGATTAAACTTTCTGAACAGGAGTGCTAACTTGCGCCAGTCCTACCATGGTCATGATAAACAGGTTCTCTCAATGCAGCAAAACTTGCCAAGTTTGGCAAATACCTCCAAATCTTTTTTGCGCACATGGAGGATAGAATCCTACCTCAACAACAATGACGCACCCATTGGAGAATCATATGATTATCTCGACCAATACGAGATGGAGAACAAACCTGTTCCTGCAATGCCCTCTCGTCTTAGGTCGTCACTGGTTTTTAGGTCCATCATCCCAGAGGATTCAGAACCTAACAGTTACACAAATGATTCCTTATCATCTGTACGCCGTGAGGATCAATTTAGAATACAGCCAGGTGCAAAGTACTATTCCTCAACGCAGTGGAACCAAACAGATTTAATGGACAATCGAGTCCAACCTGATGACTTTATGTTAAAGAGACGGAGTATACAGGTCCCAGACCACTCAGGGAACAATTTAGGCTTTGGCTCAGGAAGAGATATAATATATGCCAGTCTTGGCAGAGCTAAAAGCCGATTTCAGGTTAAGGAGCATGAGGTCCTACAAGACAACTTGTACAAAAGGCATAGTGTAGCAGACCCTAGGCATAACACATATAATAGTAACAACAAAGAGACTTCTAGCCATATGTATGGACAGCTGTTGAGAAATCAAACAGATAAAGATCCAGTAGTTGCGAATTCGCAAAGTGGAGGGTATCCCCAAAACCTCAAAGAGGACCAGAGATCCATCTCACATTATGACGTcaaaaagtgtgaaagcaaTGATGCGCAACGCGCTATTTGGCAAGAACCTCCCTCAAGAACCATGTCAGCAACAGTTCTAGAAGTGGAGGCCATCAACCAGAACAAACCCAATGTAATATCATCACCACGGTTCTTTAAAAATAGCaccaagaaaataaaatcactccTAAACATTCCAGAGAAGCGGGATAGCTCACCGAAAAGAAAGCACATTTCAAGCCTTAAAACAGATGGCAGCTCTGACACCATTATTTCTGATGACAATGAATATAAAGCACAGCAGGATGAGAAACAGCAGAGCTCCACAGCCATTTCTATGAAATCCACTGACAGCAGCATGTTGAAAAGGACAAATGGGAGGATCTCTGGAAACGAGCATCCTGCTGCTGTCTTGACCGGAGAATCATCTGCTCCTCGTTTTAGTACAGAGGAGCTCCACAGTGATGGGTCTGTGAGAACACCAGATCGGCTGTATTCCAAGAGTCAGGACAGTAGAAGAAATTTGGCACAGGGCACCACCAGTCAGTGGCAGCGAGAGCAAGTTGGAGTGAATAGGGTGTACAGCCGTTTTGAGCCTCTTTGTTCCTTTGAGACTAAACGTACCTCTTCAGGACAGGGCACCACTGCATCCTTAAAtaaaacagagagacaaagaagcTCTCTCGTTACAAGAGGAAATACAAGTACTGATCAGAGCAACCATATAGCTCAACACACGCATGgccatgaaaataaattaggACGTTTCATACAGAGGGTTGGAAATTTAATAACCAAGAATAAGTAACTCAAACGATACAGTATGTAGAAATAAGGGAAGAGCTGCTTTCTTGGACTTTTTAATTGGCACTTCGTTAAACAAATACTATCATTTGTTTTCAACTTTTGTCATTCAAAGCAGAGAGAATCCTATATGATCAATCTGCTACATTATTGCTTGGGGGCAAAAAAACAATTCCATTAACTGCACTGCAGAAGAAAATAACTTACTTTAGTGATTATCTAACTTCACCTTTGTCTAATTTGAAAATGAGTGCAATATGTTACATTGGACTACTCGTAGCATTGGGATTGAAACATGTACAATATGTACCTTCTCCTGCATATGTTCCTGATTTTCAGGTCCAAAGACACAAGAGGATCCAGAACCcagtatttatgtatttctgtagcCATGACAATCAATTTGGAATACAATCAGATGCACAATACTACTCCTCAATGGAATCAAGCAGAATTAGTCAATAGGCATGTTCAACCTGATCAGTTTATATTAAGCACACAACATATGCAGGTTCCACTCCACTCAGGAAGCAATTGATAATCCTTCAAGGACATCTGTTGATTCGACTGTTGTTACCTGAATTGTTTACATTTGTAATTAAAAGGTGTTTTTAGACAATGTTTTTACctcaaaatgtgcaaaatgttatAATACTTCTTCAGAATGTGGGCGGTGTTAACATAATGAAACTTCTGTCATGGGACATGTCAAGGGATTTATACCAAACAATGACCAATTTGTGAATAGGAAAACAAATTAAAGTTCATTGTGAGTTAAAA

Function

GO: NA

KEGG:

id description
K23930 FAM83; protein FAM83

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62838 lncRNA upstream 73710 26798698 ~ 26799518 (+) True G53172
TU62752 lncRNA upstream 320076 26552936 ~ 26553152 (+) True G53092
TU62751 lncRNA upstream 320506 26552518 ~ 26552722 (+) True G53091
TU62750 lncRNA upstream 320943 26552075 ~ 26552285 (+) True G53090
TU62743 lncRNA upstream 334708 26538234 ~ 26538520 (+) True G53083
TU62953 lncRNA downstream 46859 26933938 ~ 26934265 (+) True G53280
TU63053 lncRNA downstream 130882 27017961 ~ 27018846 (+) True G53363
TU63006 lncRNA downstream 146770 27033849 ~ 27036808 (+) True G53316
XR_003404272.2 lncRNA downstream 168685 27055764 ~ 27056998 (+) True LOC113542178
XR_004577887.1 lncRNA downstream 171799 27058878 ~ 27068180 (+) True LOC117596898
XM_026939159.2 mRNA upstream 8091 26830224 ~ 26865137 (+) True mlip
XM_026939160.2 mRNA upstream 8091 26830224 ~ 26865137 (+) False mlip
XM_034302700.1 mRNA upstream 63720 26803195 ~ 26809508 (+) True LOC117596838
XM_026939470.2 mRNA upstream 74716 26755660 ~ 26798512 (+) True lrrc1
XM_026939446.2 mRNA upstream 137222 26727249 ~ 26736006 (+) True eloal
XM_026939484.2 mRNA downstream 18418 26905497 ~ 26923251 (+) True hcrtr2
XM_026939387.2 mRNA downstream 38155 26925234 ~ 26933750 (+) True gfral
XM_034303102.1 mRNA downstream 310830 27197909 ~ 27207245 (+) False znf451
XM_026939377.2 mRNA downstream 310830 27197909 ~ 27207245 (+) False znf451
XM_026939378.2 mRNA downstream 310830 27197909 ~ 27206370 (+) False znf451
TU61306 other upstream 2815341 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 3067733 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 3175934 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 3417679 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 3758189 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 98899 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 310830 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 310830 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 310830 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 1560298 28447377 ~ 28448311 (+) True G53692

Expression Profile