RNA id: XM_026939534.2


Basic Information

Item Value
RNA id XM_026939534.2
length 3452
RNA type mRNA
GC content 0.50
exon number 27
gene id zmp:0000000760
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27033924 ~ 27055678 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCAAGGATCACGTTGGAGACCAAGCAATGCTGTAAATGGACTCTGAGTTTAAAGCAGTGCTCGGCCTAGAGATGGCACTTTAAAGCTGACTATACTGCAGGAACCTGGTGAAGAACCGGCTTCCCTCAGCACCATACACCACTCTCTGAGGAATATGTACAATTAGCAACTGAGAGTCAGAATTTTCACAATGccagctttaaataaaatgctggttctccatgttctcttgGCTTTCGTGGCTTTCTTGGGGTTCATTAAATGTCAGGATTTGCCAAGTTATGACCTGCTGGAAGAGTTCCGCTTGGTTGAGAGCAGAGGGGTGAGGCAGGTGAAAGGCTCGGAGCCAGGCTCAGTAGCATACCGTGTAAACCCCTCTCTGCATCTCAGGAAGAGCTTGAGCGACGTTTACCCAAATGGTCTGCCTACTGACTACTCTGTCATAGCCACTTTCAAGATAACCAAGGATGAGGCGAAGACATCCTGGAACCTTTGGCAGGTTAGCGACCCTGAGAGCCGGGACCTGGTAGGGCTGCGTTTTAATGGTGACTCTAGAACTCTGGACTACTTCTACAGCAGCCCCAGCAATACACAGATGCTGCGCACCTTCCACGGTGTGGAGAGGCTGTTTGACGGTGAGTGGCACAAACTGGCTCTCAGTGTGAAGGGAGACCAGGTGAAGCTACTGGTGGACTGTGAAGAAGTGAGCTCTGAGCCGCTGGATGAGCCGAGGCCAGTCATCCTCCGTGGCTACACCTCCATCGTCAAGAGAACTGCTGGAGATCGCTCTGTCTCTGTGGACCTGCAGAGGATGCATGTTTCCTGTGATGCTGACCAGGCCTATTCTGAAGGCTGCTGTGAGCTCTCCAGTGTGTGTGGAGGACATGCAGAGATTGGACTCAGTGCTAGCAGAGGCAGAGCCACATGTAAATGCATCCACGGACAACCAGGTCCACAGGGAATTTCTGGTCCAAAGGGTCACAGAGGTCTGCCAGGAGAGCTTGGAGAACCAGGGCGAATCGGAAACTGGGGGCGACGGGGAGATACTGGAGACTATGGTAACATAGGCGAACCTGGTCCTAAGGGCTACGCTGGGATCAAAGGAGAGAAGGGAATGCGAGGACTCCATGGCCCTGAGGGTGACAGAGGGCCTAATGGTCTCAAAGGTTTACCAGGTGCTGCAGGCCACAAGGGAGTGCGTGGGCCTCctggagagagaggggagactGGGCTGGCAGGAGAGAGAGGTTCAGTGGGAGATCAGGGGTACCAGGGAATTCCTGGATATCAGGGAGTGAAGGGAGATGAAGGCCCCTCTGGAAATGACGGACCTCCAGGACCACAGGGCCTGCAGGGTGTTGTGGGAGATCCTGGTGAAagaggagaacctggagaaaaagGAAAGCCTGGTATACAAGGACCTAAGGGAAGAGTTGGCAGCATGGGAATAAAGGGCATTGCTGGTGATCCAGGTTTACCTGGGAGGGATGGAGACCCTGGCATTGAGGCTTATCAAGGATCACAGGGGCCTGAGGGCAAAGCTGGAACAGTTGGTGACAGGGGTGAGAAAGGTGCTCAGGGGCCTCCAGGGAACATGGGTCCTCAAGGACGTACTGGTCTGCAAGGATACAAGGGCTCAGCAGGAAAGCCAGGAAGACCAGGACTCATTGGGCCTCCTGGAAGAACGGGACATATAGGATTACCTGGAAAACCAGGCCCAAAGGGAAGTACTGGTATTCCGGGATTTCAAGGTGTAAAAGGACAAAAGGGTGAGAAAGGACAGAAAGCACCAAAAGGCAGGGTGGGGGATAGAGGTGAGCCAGGGCCACAGGGAGGCCAGGGGAAGCGAGGGCCAGTTGGAGAGCCTGGCCTTAAAGGTAATGTGGGGACCAAAGGCGTCCAAGGAGACGAAGGGCCAGAGGGCTTTCAGGGACTTCCAGGACCACAAGGCCCAACGCTTTCAGCCCAACATGTTATCGAGGTCTGCAAGCGTGTGGTGCTGGAACAGATGTCCACATTTGCCAACTCTGTGAAGCGGACATGTGCAGCAGTGTGTCCACTGTATGGTGATGTGCCCATGGGTGCCCCTGGTCCCCCAGGACAAAAGGGACCACCTGGACCAACTGGTGATCCTGGAACTGACGGTGTTGATGGAGAAGTGGGGCAGCAAGGATTCTATGGAGAGCCTGGTGATCCAGGCAGAAAAGGGGTACAAGGTGACCaaggagagaaaggagacaAGGGTCCAAAAGGTTATGGTTTAACTGGTTACACTGGAGACCAGGGACAAAAGGGTCAGCGTGGGCGTCCTGGCAGAGTCTTCGACGGGCGCCCTGGTCAAATGGGTGAGAGAGGCCATGTTGGCCGACCCGGACTGAGGGGTCATCCTGGACTACCTGGTGTTCCTGGAGTTTGCCTGACATCAGGGTGTGGTTTGCTCAGTGGGACTGCTGGTAGCACACCCCAACAAGAATCCCAGAGCTCATCCCGACAGATATCACAGAGACTGCGGGCACGCCCATAATGTTATAGGATAACTGCAATTGTGCAATTGCATAGTGAGACAATAACTGATGTATATAGATTtggacctccacaagtccaGTCCCTCCTCATCAAAAGACTGTACGATTCCAATAATAAAGAACAGAACCATCACAAATCTACAGGATCAACCGAGGCCAACTGAGAAATTTATGTTCAAAGCAATTTATCTGGCTAACAActtattgtaattattacaaatattgtaACAAtgtcttgtgtttttaaaaaggcaTTTATGTGGTTCCAAGTTTCATGAAGGACTTTATTTTTCCTGTCCAAGTGAGCCCACAGTTTCATAACTTCATGTTCAGGTCAGGGTACTGAGGAAAATGATTTAATACTCATTAAGTGTCTCATTGGGCTTACACAACAAGTACGTTGTAAATGTATTTGGCCACAGgttatttgtgtttttccagGCAAGTGTTTTCCTAAAGATATAGcatcaaaaatcaaaatctgTTTTCTCAGTATACATCAGACTGTTGATTTTGACCAGTTCTGCTATCACTGGTTCGAATTTACTTCAAGACTATGTCAAAGTCACCTCTGTGGTTGACAGAAACCTCAAGACAGAGTGTGATTCTCACATGCTGTTCTTCTGACCTAGTGGTGGCCTttctgaatgaaagaaaaaaactcactCATAATTCCataagtttttcttcctctGGTTGTCATGCCACGTTTTATGAACTTCAGCATACTAAAATTTCTTCTGCTTTGCCTTTCAGCTGAAAAATTTCAGTTGCAGTTCTCATCAGCCCTCCAAGAAAATTTTGCCAAAAGAGAATGATGCCACTTTAGTGTCAggagatgttcagcaagcattTCATTGCATTTCATCACATTCTTTTAGAACAAATAACATATGACTTTAGTAAAGTGCGGTTTTAAAGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63549 lncRNA downstream 6886 27026815 ~ 27027038 (-) True G53809
TU63501 lncRNA downstream 166047 26867658 ~ 26867877 (-) True G53761
TU62918 lncRNA downstream 234316 26798728 ~ 26799608 (-) True G53250
TU62919 lncRNA downstream 234406 26798679 ~ 26799518 (-) False G53250
XR_003404260.2 lncRNA downstream 292405 26738543 ~ 26741519 (-) True LOC113542110
TU63476 lncRNA upstream 49133 27104811 ~ 27186076 (-) False dst
XR_004577888.1 lncRNA upstream 141681 27197359 ~ 27201898 (-) True LOC117596899
TU63467 lncRNA upstream 170667 27226345 ~ 27253952 (-) True G53732
XR_004577875.1 lncRNA upstream 250196 27305874 ~ 27314351 (-) True LOC117596885
TU63597 lncRNA upstream 262410 27318088 ~ 27319622 (-) True G53851
XM_026939533.2 mRNA downstream 8034 26977997 ~ 27025890 (-) False col21a1
XM_026939531.2 mRNA downstream 8039 26975725 ~ 27025885 (-) False col21a1
XM_026939530.2 mRNA downstream 8039 26975725 ~ 27025885 (-) True col21a1
XM_026939532.2 mRNA downstream 8040 26975725 ~ 27025884 (-) False col21a1
XM_026939386.2 mRNA downstream 64717 26959104 ~ 26969207 (-) True bmp5
XM_034303079.1 mRNA upstream 2219 27057897 ~ 27195952 (-) False dst
XM_034303093.1 mRNA upstream 2219 27057897 ~ 27195950 (-) False dst
XM_034303087.1 mRNA upstream 2219 27057897 ~ 27195950 (-) False dst
XM_034303085.1 mRNA upstream 2219 27057897 ~ 27195950 (-) False dst
XM_034303073.1 mRNA upstream 2219 27057897 ~ 27195949 (-) False dst
XR_003404274.1 other downstream 1123805 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 2298037 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2382077 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2382077 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 2993824 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 482098 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 1377542 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 2146254 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2623733 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 3056153 30111831 ~ 30122655 (-) True G55209

Expression Profile