RNA id: XM_026939537.2



Basic Information


Item Value
RNA id XM_026939537.2
length 6516
RNA type mRNA
GC content 0.51
exon number 38
gene id btaf1
representative True

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10982594 ~ 11010366 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ATGGCTGTCTCGAGGCTTGAGCGTCTGTTCATCTTATTGGACACCGGCACAACTCCTGTGACGAGGAAAGCTGCCGCTCAACAGCTGGGAGACGTGGTCAAGCTCCATCCGCATGAGCTAAATAATCTGTTATCAAAGgttttattatatttgaggAGTCCCAACTGGGACACACGAATTGCAGCTGGTCAGGCAGTGGAAGCCATAGTGAAAAATATTCCCGAATGGAACCCAGCTCCCAAGCCAAAGGAAGAGTCCCGTGCAGAAGACATGTCTCCTGAGGACAGCTCTTCAGATAGACTCAGTTTCTACAGGTTTGACATTTCCCGTTTGCTCAGACATGGAGCATCGCTGCTTGGGTCTGCTGGTGCAGAGTTTGAAGTGCAGGACGATAAGTCAGCTGAGGTGGACCCCAAGGAACGTCTGGCCCGGCAGAGGAAGCTTCTGCAGAAGAAGCTTGGTCTGGATATGGGTGCTGCTATAGGCATGGATACAGAGGAGCTGTTTAATGATGAAGACTTGGACTACACCTGTACCTCCAATGTAAATAGGTCACAGCCTGGCAAGGGGGCTGTGTTCCAGAGTTTCCGCAGCCACACACCTATGCAGGCAGCAGAGTTTATAGACTCCGAATTCCGGCCTGGCATGAGCAATCGCCAGAAGAACAAGGCTAAAAGGATGGCCAAGCTGGTGGCAAAGCAGAGATCTAGAGATATGGACCCCAATGAAAAAAGCAACGACAGCTTCGAAGGAGAGCCAGAAGAGAAACGGCGGAAAACCACAAACGTAGTCATCGAGCAGCCGGCTGCTGAGAACAAAGTCTTAATTGATAACATTCCTGACAACTCAAGTTTATTTGAGGAGACTCAAGAATGGCCCCTGGAAAGTTTCTGCGAAGAGCTTTGTAATGACCTGTTTAATCCATCCTGGGAGGTGCGGCACGGTGCAGGCACAGGCCTGAGAGAGGTGCTGAAGTGTCATGGTGCAGGAGGAGGGAAGATGGTGGGCAGCACTTCAGAACAGTTGGCCCAGCAGCATCAAGACTGGTTGGAGGACTTGGTCATCAGGCTTCTCTGTGTCTTTGCTCTGGACCGCTTTGGAGACTTTGTGTCTGATGAAGTTGTTGCACCAGTCAGAGAGACTTGTGCACAGACACTGGGCGTGGCCTTGAGGCACATGACTGAATGCGGCGTTACCATGACAGTGGATGTTTTGTTGAAGCTGCTTACGGAGGATCAGTGGGAGGTTCGGCATGGAGGACTATTGGGCATCAAATACGCCCTTGCTGTCAGACAGGATCTTATTTCACAACTGCTTCCTCGAGTACTTCCTGCCATCACTGAAGGTCTCCAGGATCTGGATGATGATGTGCGTGCAGTAGCAGCTGCTGCTCTTATCCCTGTAGTGGAAGGACTGGTGCAGCTACAGCCTGCTAAGGTTCCTTTCATAGTGAACACACTGTGGGATGCTCTGCTGGAGCTCGATGACCTCACAGCTTctacaaacagcatcatgactTTACTATCGTCCCTGCTCACATACCCTCAGGTCCTTCAGTGCAGCATGCAGCAGTCACTGACCATTTTGGTTCCTCGAGTGTGGCCATTTCTTAGACACACCATCGCTTCTGTTCGACGTGCTGCCTTAGAAACCCTTTTCACGCTGCTGTCCAAGGCTGATCAGAGCTGCGCCATGTGGCTGAACCCCATCCTGCAAGACATGCTGAGGCACATATTTCAGTCCTGCATTCTCGAGAGCAACCAGGAGATACTCGATCTCATCCAGAAGGTGTGGGGCGAGCTGTTACGGCAGGCCCCTCAGCAGTATGTGGTGGCAGCCAGCTGTCCATGGATGGGTGCCTGGCTCTGTTTGATGATGCAAGCACCTCACATTCCCATTGACCTCAACATGCTATTGGAGGTCAAGGCTCGATCCAAGGAGAAGGCGAGTGGAAAGTCTCGGCAGGGTGGACAGCAGGTGAAGGAGACTGTGCAAGAGTACATCGGGGGAGCTGACACTATCACTGAGGACCCAGCCTCGAGAGACTATGTAGTGACTCGTGCCCGGCTCATGGCTGCCAAACTGTTGGGGGCACTGTGCAGCTGTATCTGTGACCCACGATTAAACAGCTCGACTCAAGAGATTCGGCCAGCGGAGTCATTGGCTCAGCTTCTCCTCTTCCACCTCAACTCGAAGTCGGCTCTGCAGCGTATCGCTGTATCCATGGTGCTGTGTGAGTGGGCATCTTTACAGAAGGAGTGCGAGGTGGTGTCCAGTGTGGTCCAGCCTCGTCTGTTGGCCATACTGTCTGAACATTTATATTATGATGAAATCGCCATCCCCTTCACACGCATGCAGAATGAATGCAAGCAGCTCATCGCGCTCCTTGCCGATGCTCATATCGACGTGAGGGAGAAAGTCAACTGCAGTGTCTTCACAATTGATCAGGCCAACGAGCTGGTGACCAGCATCTTCTCTGAGGCCACAGCTTCTTTGAACCTGAAGTCTCGGCAGCTGCAGTCGTTGGACAGTAAGCGGCAGCAGGCGTGCTCTACAGTGGCTGAGACCAGTACTGAGTGGCAGCAGATGCATCTGCGTGTGCATACTTTTGCGGCCTGTGCTGTGGTAGGCCTGGCGGCGCTGCCTGACAAGCTCAACCCGCTGGTGCGCCCCCTTATGGAGGCCATTAAGAAGGAGGAGAACATACTGGTGCAGGGATATGCCGCCTCCAGCGTAGCCCGCCTGCTGCAGCTCTGCACGGGCCGAACGCCCTGCCCCAATTCAAAGATCATTAAAAACCTGTGCAGCTCGGTGTGTGTGGACCCCATGCTCACGCCAAATGCAGAGTGCCCTgttccaccacacacacctccaacACAGGATGGCTGCAAAGCCAACGTGTCTGAGAAAGACGGCATGCACCACAtggtgaataaaacaaaaggcaTCATCACTCTTTACCGACATCAGAGAGCAGCTTTTGCCATCACCAGCAAGAGAGGCCCCGCCCCCAAACTGCCAAAAACCTCCCCCAATGACCTTCCCCCAGGCAGCTCCATCTCCACAGAAACCGATGAGAGTAAGAAGCCGATTCTCATCCAGAGGAGAGGTGCAGAGTTCTCACTGATGACTATTGCTAGGCACTTTGGGCCTGGTCTCACCAAGGCGTTGCCCTGTCTCTGGGAGTCTATGATTGGCCCGCTGAAGGCTCTGGACACACTGGGTTGTGATTCCAGGCAGCTCTTGGAGAAGGGTGACTTGGTAGCTCAGGAGCTGGTCAACTCTCTACAGGTGTTGGAGGTCACCACAGGAGCCGTGTCTCAGGAGCTCATATCTCTGctgttGGAGCAGCTGCATCTGCTGTGTGCGTGTCTCCAGCACCCGTACACGGCTGTGCGTCATATGGCCGCTCGCTGTATTGGTGTGTTCAGCAAGATCGCCACTATGGAAACCATGAACTGCTTCCTGGAGCAGGTTCTGCCATGGTTAGGGGCGATTGATGACAGCACCAAACAGGAGGGAGCCATCGAGGCATTGGCCTGTGTGATGGAGCAGCTGGATGTGGACATTGTACCCTACATTGTGCTGTTGGTGGTGCCTGTGCTGGGCCGCATGAGCGATCCTAGTGACAGTGTGCGCTTCATGGCCACACAGTGTTTTGCCACTCTCATACGCCTGCTGCCTCTGGAGGCTGGCATCCCCAACCCACCCACCATGTCCGACGATCTCATTCGTCAGAAGGCCAGAGAGCGTCACTTTCTGGAACAGCTATTGGATAGCAGGAAGCTGGAGAATTACACGATCCCTGTCCCTATTAAGGCAGAACTCAGGAAATATCAGCAAGATGGAGTGAACTGGTTGTCCTTCTTGAATAAGTACAAGCTGCATGGAATCCTGTGTGATGACATGGGTTTAGGTAAAACCCTTCAATCCATCTGCATTCTTGCTGGAGACCACTACCTCAGGGCACAGGAGTATGCCAGGACCAAGGCTGCAGACTGTTGTCCTCTGCCCTCTATAGTTGTGTGCCCACCTACTCTGACAGGCCACTGGGTGGACGAGGTGGGCAAATTCTGCACTAAGGAGTACCTGAATCCTCTCCACTACACGGGTCCCCCTACAGAGAGAGCACGATTACAGCACCAAGTGAAAAAGCACAACCTTGTGGTAGCATCATATGATGTAGTGCGGAACGACATTGACTTTTTTAGgaatattaaatttaattactgTATCCTCGATGAGGGTCATGTTATTAAAAATGGGAAGACCAAACTATCCAAAGCTATCAAGCAGCTGTCTGCCAACTACAGAGTTATCCTCTCAGGAACGCCAATTCAGAATAATGTCCTGGAGCTGTGGTCTCTCTTTGACTTCCTGATGCCAGGCTTTCTGGGTACGGAGCGCCAGTTTGCCGCCCGTTACGGGAAGCCCATCCTTGCTAGCCGAGACGCCAAGAGCTCGTCCCGAGAACAGGAAGCAGGGGTTTTGGCTATGGAGGCTCTGCATCGGCAGGTGCTACCCTTTCTCCTGAGGAGGATGAAGGAGGATGTCCTCCAAGATCTGCCACCCAAGATTATACAAGACTACTACTGCAACCTGAGTCCCCTACAGGTTCAGTTGTACGAGGACTTTGCCAAGTCTCGGGCAAAGGTGAACGTGGACGATGTCCTCTCTACGGCAGCTCAAGAAGATGAGGAAAAACCCAAGCTGAAGGCCACCGGACATGTGTTCCAGGCTCTGCAGTACCTGAGGAAGCTGTGTAACCACCCAGCACTGGTCCTGATGCCTCAGCATCCTGAGCACAAGCGCATTAGCGAGCAGCTCTCCTCCCAGAATTCCAGCCTCCGGGACATCCAGCATGCACCAAAACTCTCTGCACTTAAACAGTTGCTGTTGGACTGTGGACTGGGCTCATCCGGCTCCTCGGACGTCAGTACAGAGGCTGTGGTGGCTCAACACCGTGTGCTGATCTTCTGCCAGCTGAAGAGCATGTTGGACATGGTGGAGCATGATCTGCTGAAGCCTCAGCTGCCAACAGTCACCTATCTGCGTCTGGACGGCAGTGTGCCCGCAGGCCTGCGCCATTCCATCGTCTCCAGGTTCAACAACGACCCGTCGATAGATGTTCTGCTCCTGACGACACACGTGGGTGGTCTGGGCTTGAACCTCACAGGAGCCGATACCGTGGTGTTCGTGGAACATGACTGGAATCCAATGAGAGACCTACAGGCTATGGACCGCGCTCATCGAATAGGACAGAAACGTGTGGTGAACGTGTATCGTCTGATCACTCGTGGCACTCTGGAGGAGAAGATCATGGGTCTGCAGAAGTTTAAGATGAGCATAGCTAACACAGTGATCAGCCAGGAGAACGCCAGCCTCCAGAGCATGGGCACAGAGCAGCTGTTAAACCTTTTCACTCTGGATAAGGATGATAAGGCTGAGAAGAGCGAAGCGGCGTCCTCCTCCTCAGGGAAGGCCAGTATGAAGTCCGTACTGGATGGCCTGGGGGAGTTGTGGGACCAGCAGCAGTATGAAGCGGAGTACGACCTGGATACTTTCATGCTCTCACTGCACTAAGCCAGCACACCCTACTCACGCAGCCTCCACCAAACGTCCTCTTATGATCGACCACTTTTATTTGTTCCAGACAATAACGTGGGTCATCTTGACCCCAAAAGAGTGAAACGCCGTCTGGATAAAACATTTGGCCATGGTCCCTTACAAAATATTCGGTCAGTCGTGTCAGCCTGGACTTCATCTTGCTGTTAAAGAACTCTCACACTCCACACGTAGACTTTCCTACCCCACACTGCCAAGCTGAGGAGGAACGCACTGGGATTAACACTTTCCCCCAGACTTGGTCCACTGATTTTATTCTCACACATGCTGTGGGATCTCCCTTGTATTGTTGATCATAAACAGTATCATCGACTAGTCATCCTGCACTTATAAAGTCTTAAAGCTTACCTCGAAAGTCAAATCACCTATCAGTATTGGATCTTAATAGGCATAAAAGCCAATATACAAAACATAGGattttgtatatattgtttatttttgtagactGGACAGTCATCTTAACCAAAAAGGCTTCTGGAGCCTTGCATCTAGAAGATCACCAGGGGACACTGTAGACATTTAGACAGGAGAAAAAATTTAACTGGAATGAAAAATGCTAATCTTCCTTTCCACTAGGGGGCGATAGTCTTTTTCTCTGAAGCCTGTCAGTCCCTCATCCCCTCTGTAGCTCAGATCAGAACATGACCCACAGCCtaccatgacacacacacacacacccagagaaaatgtgaaatgtctGGCATGTGCAAGGGCACGGTGCTGACTGGAATCATAGGTACTGTTCACCTGGCAGATATAGGATGCTCATGGAACCTTGTTGGATagttttaaaaaggaaaaaagaaaacaaggacttgtaaatatttctgtaatttgCCTTCTTTGATTAAGCCAatagaattttaataaattctaATGAGCTTTCTTTGA

Function


GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K15192 BTAF1, MOT1; TATA-binding protein-associated factor

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52327 lncRNA downstream 2299 10978646 ~ 10980295 (-) True G44275
TU52326 lncRNA downstream 4171 10974819 ~ 10978423 (-) True G44274
TU52323 lncRNA downstream 26102 10953505 ~ 10956492 (-) True G44271
TU52312 lncRNA downstream 57336 10922309 ~ 10925258 (-) True G44262
TU52216 lncRNA downstream 165302 10816672 ~ 10817292 (-) True G44173
TU52647 lncRNA upstream 376840 11387206 ~ 11387946 (-) True G44582
TU52906 lncRNA upstream 829086 11839452 ~ 11839822 (-) True G44818
TU52909 lncRNA upstream 901844 11912210 ~ 11914029 (-) True G44820
TU52938 lncRNA upstream 997460 12007826 ~ 12008029 (-) True G44848
TU52939 lncRNA upstream 1000565 12010931 ~ 12021468 (-) False pwwp2b
XM_026932931.2 mRNA downstream 55366 10894351 ~ 10927228 (-) True march5
XM_034302753.1 mRNA downstream 120484 10856138 ~ 10862110 (-) True dennd10
XM_034302754.1 mRNA downstream 121180 10856138 ~ 10861414 (-) False dennd10
XM_026945155.2 mRNA downstream 132881 10845031 ~ 10849713 (-) True prdx3
XM_026943420.2 mRNA downstream 185499 10785741 ~ 10797095 (-) True polr1b
XM_034302584.1 mRNA upstream 27603 11037969 ~ 11041301 (-) True ccnj
XM_034302583.1 mRNA upstream 27603 11037969 ~ 11040883 (-) False ccnj
XM_026942945.2 mRNA upstream 27603 11037969 ~ 11040858 (-) False ccnj
XM_026943244.2 mRNA upstream 44402 11054768 ~ 11094954 (-) False blnk
XM_026943236.2 mRNA upstream 44402 11054768 ~ 11094954 (-) False blnk
TU51003 other downstream 1753710 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 2128800 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 2128800 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 2198796 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 2512165 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 698248 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1134529 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 1514270 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 1521077 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 1621447 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile