Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034302919.1 |
| length | 2567 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 16 |
| gene id | supv3l1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 9773932 ~ 9783035 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006310 | DNA recombination | biological_process |
| GO:0070827 | chromatin maintenance | biological_process |
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0070584 | mitochondrion morphogenesis | biological_process |
| GO:0000958 | mitochondrial mRNA catabolic process | biological_process |
| GO:0000962 | positive regulation of mitochondrial RNA catabolic process | biological_process |
| GO:0000965 | mitochondrial RNA 3'-end processing | biological_process |
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0035945 | mitochondrial ncRNA surveillance | biological_process |
| GO:0035946 | mitochondrial mRNA surveillance | biological_process |
| GO:0030307 | positive regulation of cell growth | biological_process |
| GO:0032508 | DNA duplex unwinding | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0042645 | mitochondrial nucleoid | cellular_component |
| GO:0045025 | mitochondrial degradosome | cellular_component |
| GO:0034458 | 3'-5' RNA helicase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003678 | DNA helicase activity | molecular_function |
| GO:0003725 | double-stranded RNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU51332 | lncRNA | upstream | 102192 | 9668611 ~ 9671740 (+) | True | G43422 |
| TU51269 | lncRNA | upstream | 246773 | 9526861 ~ 9527159 (+) | True | G43360 |
| TU51246 | lncRNA | upstream | 278722 | 9494977 ~ 9495210 (+) | True | G43337 |
| TU51239 | lncRNA | upstream | 284973 | 9488759 ~ 9488959 (+) | True | G43330 |
| TU51055 | lncRNA | upstream | 426696 | 9345430 ~ 9347236 (+) | True | G43186 |
| TU51561 | lncRNA | downstream | 88511 | 9871546 ~ 9871819 (+) | True | G43615 |
| TU51592 | lncRNA | downstream | 276491 | 10059526 ~ 10077649 (+) | False | G43646 |
| TU51598 | lncRNA | downstream | 288132 | 10071167 ~ 10072098 (+) | True | G43651 |
| TU51593 | lncRNA | downstream | 291147 | 10074182 ~ 10077649 (+) | True | G43646 |
| TU51610 | lncRNA | downstream | 310700 | 10093735 ~ 10101531 (+) | True | G43663 |
| XM_034302989.1 | mRNA | upstream | 1575 | 9763633 ~ 9772357 (+) | True | vps26a |
| XM_026944483.2 | mRNA | upstream | 28404 | 9739790 ~ 9745528 (+) | True | kifbp |
| XM_026938626.2 | mRNA | upstream | 107339 | 9643809 ~ 9666593 (+) | True | si:dkey-103j14.5 |
| XM_026945162.2 | mRNA | upstream | 286393 | 9421066 ~ 9487539 (+) | True | prim2 |
| XM_026942835.2 | mRNA | upstream | 365414 | 9382638 ~ 9408518 (+) | True | map3k21 |
| XM_026939562.2 | mRNA | downstream | 1471 | 9784506 ~ 9795574 (+) | True | hkdc1 |
| XM_026939550.2 | mRNA | downstream | 14213 | 9797248 ~ 9815124 (+) | True | hk1 |
| XM_034302918.1 | mRNA | downstream | 23232 | 9806267 ~ 9814046 (+) | False | hk1 |
| XM_026932787.2 | mRNA | downstream | 48767 | 9831802 ~ 9864941 (+) | True | tspan15 |
| XM_026934220.2 | mRNA | downstream | 93672 | 9876707 ~ 9896794 (+) | False | rufy2 |
| trnak-cuu | other | upstream | 1304236 | 8469624 ~ 8469696 (+) | False | trnak-cuu |
| TU50445 | other | upstream | 1307620 | 8465747 ~ 8466312 (+) | True | G42685 |
| XR_003404394.2 | other | upstream | 2107899 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU49753 | other | upstream | 2552909 | 7203950 ~ 7221023 (+) | True | G42075 |
| TU48562 | other | upstream | 4432182 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU52056 | other | downstream | 769224 | 10552259 ~ 10558295 (+) | True | sprn |
| XR_004577889.1 | other | downstream | 811539 | 10594574 ~ 10608704 (+) | False | LOC113543929 |
| XR_004577793.1 | other | downstream | 1316558 | 11099593 ~ 11171114 (+) | False | dntt |
| trnag-ccc | other | downstream | 1808300 | 11591335 ~ 11591405 (+) | True | trnag-ccc |
| XR_003404598.2 | other | downstream | 1899829 | 11682864 ~ 11726772 (+) | False | LOC113545306 |
