RNA id: XM_026939659.2


Basic Information

Item Value
RNA id XM_026939659.2
length 1688
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC113542265
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4229822 ~ 4248823 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGAGCTTGTGCAGTTGCTTTGCTGAATATTTCATGGCGGAGACATGCACCTCTGAAGATACAGCTAACCCTGAGAAACGAGAGACACACATGGATGATCTGAGTACAAGCCCTGTCCAGCCCATATCTCAGAGCATGCATACTCCAGACCTAAACCAAGTAGAGAGTCCACCACCAATATGGGTGGGCAAGACCAACTGTCCAACTGGCTGTATGTACTGTGCATGTTCTGGCTCCAAGTCTCTACTGCGCAGACTCAGGCTCCAGTTTTCTCAACATGACGACTCCTACTTCGAcaaaaaaaggcttcaaaacCACACAATaGAGGAATGTCGCCTGGTAGTCCAACACTAACAACCCTGAGAGATGGATTCACAAAGAGCAGTGAAAGGAGGAAATTCACTACAGctcagtgtggaaagagttttactcaGGAAAATATTCTCAAGCGAGAACAGGgtgttcacacaggagagaaaccatATGAATGTTCATATTGTGGAAAAAGATGTACTCGCCACATTGATCTCCAAAGACACCAGAAAATTCACACAGAAGAGATATattactgctcacagtgtgggaagaatTTTAAGCGTCTGAAGTATCTCCAGCAACATCAGCTCATTCATACAGGAGAAAAACCATATCGGTGTTCACACTGTGCGAGTGGTTTTACACAACGCAATCATCTCCGACAACACCTTCgcgttcacacaggagagaagccgtatcactgctcccaatgtgggaagagttttgctCAACAAAGCAGTCTGCAAACCCACAAGCGCATTCATACAGGAGAAAAACCATATCGGTGTTCACACTGTGGGAGTAGTTTTACACAGCGCAATCATCTCCGACAACACCTTCgcgttcacacaggagagaagccgtatcactgctcacaatGTGGGAAGTGTTTTGCTCAACAAAGCAGTCTGCAAATACACCAGCgcgttcacacaggagagaagccacaTCAGTGCTCACAATGTGGGAACAGTTTTAGTGACAGACGTAATCTTAAACGACACCTGCGTATTCACACAGGACAGAAGCCGTTTttctgctcacagtgtggaaagagtttttcTTACCAATGCAGTCTGCAAACACACCAgttcattcacacaggagagaagccacaTCAGTGCTCAGAATGTGGAAATAGTTTTAGTGACAGAACGAATCTTAAACGACACCTTCgtgttcacacaggagagaagccgtttTTCTGTTcccagtgtggaaagagtttttcTTACCAATGCAGTCTGCAAACACACCAgttcattcacacaggagaaaagccaCATCAGTGCTCAGAATGTGGAAATAGTTTTAGTGACACACGTAATCTTAAACGACACCTTCGTGTTCACACAGTAGAGAAGCCGTTTTTctgttcacagtgtggaaagagtttcaAGTTTtcaaatatgttaaaaacacacaagtgtaTACATTGAATCTGTAATCCTGATTTTATACTAACAGTGAAATGCCTGATGGAACTTGATTTGTGTCACTGGGAGGCACTTGTAACTTATCTTGTACCATAATATTGTCACTTTACTATAATATAATGCAACAAGGCCTTGGAGAATGCAATCTTGTCCTACTGTCTTGTGGATTTATATTGTatagaatgacaataaagctctcTACTAATTTCTACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47974 lncRNA downstream 388662 3792229 ~ 3841160 (-) False G40522
TU47975 lncRNA downstream 388662 3810868 ~ 3841160 (-) True G40522
TU47972 lncRNA downstream 388880 3838818 ~ 3840942 (-) True G40521
XR_003404606.2 lncRNA downstream 391640 3819051 ~ 3838182 (-) True LOC113545372
TU47763 lncRNA downstream 516989 3702221 ~ 3712833 (-) True G40323
XR_004577552.1 lncRNA upstream 239723 4488546 ~ 4496696 (-) True LOC117596430
TU48257 lncRNA upstream 289236 4538059 ~ 4539526 (-) True G40770
TU48440 lncRNA upstream 416699 4665522 ~ 4665725 (-) True G40936
TU48442 lncRNA upstream 418383 4667206 ~ 4668993 (-) True G40938
TU48466 lncRNA upstream 490561 4739384 ~ 4739711 (-) True G40962
XM_026933264.2 mRNA downstream 140304 3892536 ~ 4089518 (-) False galntl6
XM_034302098.1 mRNA downstream 140304 3892684 ~ 4089518 (-) False galntl6
XM_026933253.2 mRNA downstream 140305 3877190 ~ 4089517 (-) True galntl6
XM_034302839.1 mRNA downstream 360058 3843479 ~ 3869764 (-) True galnt7
XM_034302840.1 mRNA downstream 360058 3843479 ~ 3869764 (-) False galnt7
XM_026939705.2 mRNA upstream 10908 4259731 ~ 4274167 (-) True LOC113542293
XM_034303192.1 mRNA upstream 35552 4284375 ~ 4289439 (-) False LOC117596921
XM_034303191.1 mRNA upstream 35552 4284375 ~ 4289438 (-) True LOC117596921
XM_026939714.2 mRNA upstream 44673 4293496 ~ 4296129 (-) True LOC113542300
XM_026941951.2 mRNA upstream 214873 4463696 ~ 4473298 (-) True sparcl1
trnah-gug_3 other downstream 1195269 3034482 ~ 3034553 (-) True trnah-gug_3
trnah-gug_2 other downstream 1195885 3033866 ~ 3033937 (-) True trnah-gug_2
trnae-uuc other downstream 1197019 3032732 ~ 3032803 (-) True trnae-uuc
TU47094 other downstream 2056071 2173358 ~ 2173751 (-) True G39720
TU46993 other downstream 2250291 1977326 ~ 1979531 (-) False lgi2b
XR_004577883.1 other upstream 296761 4545584 ~ 4609450 (-) False dclk2a
TU48529 other upstream 954883 5203706 ~ 5227923 (-) False lsm6
TU48528 other upstream 976207 5225030 ~ 5227923 (-) False lsm6
XR_004577821.1 other upstream 1507888 5756711 ~ 5819513 (-) False gab1
XR_004577908.1 other upstream 2912651 7161474 ~ 7204151 (-) False lef1

Expression Profile