RNA id: XM_026939788.2


Basic Information

Item Value
RNA id XM_026939788.2
length 5493
RNA type mRNA
GC content 0.48
exon number 15
gene id kcnq5a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14388987 ~ 14514886 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCGCGCGACGGTCCTTCGGCTATGGCGGAACCGGAGCTTGATTAAACTCACTCAGGGGCTAACAGCTGGCAGTATAACAGGCAAAAAAGGACAGGAAACATACGAAAAATGACTCCTCTCTAAATACGGACGAGTCTTGTTCATTTGTGCTTCTTGTAAAGTAGCCCAAAGTAATCCATCCTCTGTGAGAAAGCGCTGCTTCTACAGTGAGTGAGAATGAGGCAGTAAGTCACTGAAGCTAATGTCTGCTTGCGcccttcttttttccttctcggGTATAATAACTATATGAAGCTTTGTTTCTGAATTAATTAGCTGTTATAGTATATGAGTGTATTCTCTAGGGTAAATGTTACTACCTGAAACACTTAGTTTCCCCTTggtattagttttattatttaattcgTCGAGCACTTGGTCGGTTATTTAGTCCGTAACTTAATGTCTtccttcagagagagagagagagagagagagagagagagagagctctccGTATacggctctctctctctgctttcacACTGACATAAATGGTCATTCACAGGACGAGCTGATCTGCTGATCTGAGGTGGCAAAAACACTTTGCAAAGTGATATTTCGTTAAATATCTGTGAATGACGCCCTACCTCATTTCTTGCGTAAATTACGGGAGGTGACAGAAGCTCCGTCTGCGTTGTGGCGAAGCTTCATAACGGATCCAGCTCCTCTGAAGTGTCTCTCAGCCGCTCAGCGCGcgcgtgtatgtgtgagtgtgtgtgtgtgtgtgtttctgggcTGGAGTAAAAGAGAGTATCTTTCACACTCAGGGACAGAGGGAGGGGAACGAGAAGCTTACGCTGATGTCGGCAGGTGCCCTCCCCTCATCAAATTTCTACCACTGACATGGTGACACTTGTTCAGAAGTCCGGGTTCGAGGCGGCTCGTGCACACACAGCGAGAGCAGCGCGGATGCTCGCCGCTTGTAAGCAGGTGAAACGCATCAGAAGAAAGACTTCGTTGTAGCCGGTGAGCTCTAATAAAGACAATCCCGCTGATGACAATTTGAGCATTGTGACCGAAGCTCTACTCAAAGTTTCTTCATTGCACATCACTTTATATGCGCGCCTTGCCGGTGCCAAGCGCACGTGTCCAGCCGGCGCTGGCGATGCAATGCCGCGCGACCACGGCGGCGACGAAAGCACCTCTGGCCTCTGGATGAAAGCGTCTCCGGGGCGCCGGGCCGAGAACTACGGCCTGAAGGATGTGGAGGGCGGACGCAGGGCGATGAGCAGCGCCGACAGTGCGAGGAGAGCCCGCGGCGCCCGTCTCAGTCTGCTCGGCAAGCCGCTGGCGTACGGGGCGCAGAGCGGCCGGCGGAACGCGCGCTACCGGAAGCTGCAGAACTACCTGTACAACGTGCTGGAGAGACCGCGCGCCTGGGCCTTCGTCTACCACGCGTTCGTCTTCATCCTGGTGTTTGGCTGTCTGGTCCTGTCTGTGTTCTCCACCATCCCGGATCATATGGACCTCTCTAACCACTGCCTACTCATACTGGAGTTTGTAATGATCGTTGTGTTTGGTCTGGAGTACATTATTCGCATCTGGTCTGCTGGATGCTGCTGTCGCTACAGAGGATGGCAAGGGAGACTGCGCTTTGCCAGGAAGCCCTTCTGTGTCATAGACATCATTGTGCTTATTGCGTCCATTGCTGTTGTATCAGCTGGCAGCCAGGGAAACATTTTTGCCGCGTCTGCACTGCGCAGCCTTCGCTTCTTACAGATCCTGCGGATGGTGCGCATGGACCGACGAGGGGGTACCTGGAAACTGCTGGGATCTGTAGTCTATGCCCACAGCAAGGAGCTGGCAACTGCCTGGTACATTGGGTTTCTCGTACTGATCTTCTCTTCGTTCCTGGTTTACTTGGTGGAGAAAGATTTAAACAAGCAGTTTACCACCTATGCTGATGCACTTTGGTGGGGGACTATCACTCTTACTACCATTGGCTATGGGGATAAGACGCCTCAGACCTGGCCAGGGCGACTCCTGTCAGCAGGTTTTGCTTTGCTGGGGATCTCCTTCTTTGCCCTGCCTGCGGGGATTCTAGGCTCGGGCTTTGCTCTGAAGGTGCAGGAGcagcacagacagaaacactTTGAAAAGAGGAGAAACCCAGCTGCCAGTCTTATACAGTGTGTTTGGCGTAGTTATGCGGCTGATGAGAACTCGGTTTCCATTGCTACCTGGAAGCCTCATTTGAAGGCATTGCATACCTGCAGCCCTACAAAGAAAGACCAGGGCGAATCCACCACCAGTCAAAAACTGAGCTTTAAGGAACGGGTACGCATGGCCAGTCCTCGTGGTCAGAGCATTAAGAGCAGGCAGACATCACTGAATGATAGACGCTCTCCTGTGACTGAGGTAGCCACAGAGGGGAGCAGTCCAGCCAAGGTACAAAAGAGCTGGAGTTTCAATGACCGAACACGTTTCCGACCCTCGCTCAGACTCAAGAGCCAATCACGCACTATGGCCGAAGCTGACAGTTTGGGAGGAGAGgaatgttttgatgagaaagGCTGTCactgtgatgtcactgtggagGATCTGTCTGCTCCTCTGAAGACAGTCATCAGAGCTGTCAGAATAATGAAGTTCCACGTGGCCAAGAAGAAGTTCAAGGAGACTCTGCGGCCATATGATGTGAAAGATGTGATTGAACAGTACTCAGCCGGGCACTTGGACATGCTGTGTCGCATCAAGAGTCTCCAGACTAGGTTGGATACAATAGTGGGTCCACCACAGACCCTGAGCAGCAAAGCCAAGActttttcctctccctccctgCACTCGTATTACAGCCAAGCCAAGAGGAAGCACTCGGCCCCAGGGGTGGACCAGATCTTGGGAAAAGGGCAGATACCCATGGACAGGAAGATAAGGGACAGGATCCTTCCAGAGGGCGAGTCTCTGGAGCATGACATGAGCATGCTGGGCCGTGTGTGTAAGGTAGAGAGACAGGTGCAGTCCATTGAGTCGAAGTTGGACTCCTTGTTGGATATCTACCGTCAAGTTCTCCAGAAAGGCTCTTCCTCAGTACTGGGCCTATCAGCTCTTCCTCTGTTTGAGCTGGAGCACACCTCAGACTACCACAGCTCCATTCAGAGCAAAGATATCTCCTCCACTCAGCTGAGCAGAAGTGGGATTTCCCGCTCAGTCAGCGATAACCTGCCCTGTGGCCTTCAGCTTGTCCTGGCACCCAGTGAGCTCAACGTGGGCACTGGCTTCCCAgcatcctcttcctctttctccccATCTCCACTGCTTCAGAATGCACCATCTAGCCCAGACAGTGTGTACCCAGCTTCCCCTCCTCCCATCCTCACTCCCAACAACCTCTCCAGAGCTCATTCCAACTTTCCTGAGCTGACCAGACCTCTTCCTATGaccacccccaacacacacacactccagctgcCCACTGTGGCTCCACTGCCTCCAAGCAGGCCTTCCAGCATGATCTCAGAGACCCTGCAAGAAAGCAGTCCCAATGCTTGCCTGCTTAACACCCAGACTGAAGCTGTTTCGGACACAGAGGCTAAATGTTCAGAGAGCACAGTGCAGCTCAGGAGCAGGCATGAGCGGAGCCCCAAGGAGGAGGGCTCCTGGAGGAGACACTTGAGTCTCGAAATTAATCCACTGAGCCTCACATCTTCGGCAGCAGTCAACTCGCTGCAGGCTGATCGGGCATTGGGGAAGTCACTCTCTGCACAGAACCTCATGCTGCCATCAGGCACAGAGTGCCACCCCAACCTGTCTGCTCGGAGTAGCGGCAGCAGCAACAACGAGTCCAATGACCGGGAGATGCTGACAGACTGGGGAGAAACAGAACTCTTCATCACTGACAAAGAGCTGGCCACCAGCAAGGGGAACTTCAACCTGCTCTCTCAGCAGAGCACAGATGCCAGCTTCTCAACAGAGCTTGTACAAATGGTAGCCAGTGGACCAACTCAGAGCCAGACAAGGCCCTCGGGCAGCTCAGAGTCTCTAAGCCTGCCTCACGTCCTTTTAAAgtaacaccaacacacacagcagcctcAGCGTGGAGACTGGACACACGCTGTAATCCCTTATTCACTTTTTCCAAAGGAAAGAGGGTGGCAGCTTCACTTCTAGCCTTTTCTAAGTTTCAGCATCAGTTGGTTAAAAAGATGTGATGTTCTCATAACTTTATGTTCTTACATGCCATTGCATGGATAATTTTGTCATGATGGGAATTTTAATGAAGTAGAAGGTATTTAGCATTACAAGATGACATGAAGGATTATGGTACTGAATGAGCTCTGATCTCAGTCTTGCATGTGCACTTGCATGTTTAAAATGCAACCACACATAGGATTGAGagtatttatgcatttaagGTTATTAACAGCCTACTCAGTCTTAGAATTCATATTTGAGTCTCCTTTTTTATACTGTGCTTTATTCAGAAATGTATGTCTTACTCAAGTCAAATGTTTCACCAGTAAAATAAATCAAGCATAAGCACCATGCATATTTGTccaaaaaatagttttaacaGGTTCAAATAACCAGGgttaattttcttttatgtgACTGCCTAGAAACCTGCATCAATACCATCAACACTGACttctttagatttttatacGTTTTTATTGTGTAGCCTCacatattacataatttatCTCACATttgtattctgttttattctgtagCCCACCGCAGTCTTAAAGTCAATCTAAAAAGCTGCTTACCATTCTTCTATTAGCTGGTTATCAGTATAAATTCAATAAGAATGTAACACATATATGATGTCAATATCAGTTTGTATATCATGAGACAAGCCTACTTGTGTTGAAGGATTTCTGGAGCTGTGCAAAGCCTCTGGTACACACTGAGGATGATCTTGGCACTGTAGCTTACAACAGTTGGAAGCACAATTGTTCAAAGAATTACAAGAAACCTGCAAATGTGATGAAAGGTTTTTACATAATTCATATTTGTAATCCAGATATATGGACTTGATGGTACATTAGACTCTGTTGATTTGTGTTTCATTGATTCACTATAGAATACATATATTTGAGTTGCAGAAAAATAATGTagattaatgttaataaataacacattttagtttattttaatttgtatctAAATGCTTCATTGTGCCTTTTTGCATAGTTCTTTGGTGTTACCTGTCCTAATTCTCTTTATACACGTCCTTTGGGAATTTGTTAAGAGTTTAGGTTGGGATAATTAGACATTTCTGTCTGATTGTGTACTAAgcctttgtcattttttgtgtttgtttgtttgtttgttttgccacTAATTCAGTAATTTATTACACAAAACTGGCCTTAATATACATGCTTGATAATGTTACCATTCTGTCAtgctgattaatttatttttaactatgTGCACATAGCAGAGCTGAAGCTCTgggtttgaagaaaaaaaatgaaaaaataaactttatcaTACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54707 lncRNA downstream 97354 14289556 ~ 14291633 (-) True G46304
TU54560 lncRNA downstream 204901 14183768 ~ 14184086 (-) True G46183
XR_003404420.2 lncRNA downstream 747463 13632755 ~ 13641524 (-) True LOC113543535
TU54100 lncRNA downstream 924248 13464496 ~ 13464739 (-) True G45755
TU54091 lncRNA downstream 958088 13430365 ~ 13430899 (-) False csgalnact2
TU55041 lncRNA upstream 98656 14613541 ~ 14613818 (-) True G46590
TU55042 lncRNA upstream 99631 14614516 ~ 14614764 (-) True G46591
TU55026 lncRNA upstream 102768 14617653 ~ 14625970 (-) True G46576
TU55183 lncRNA upstream 422211 14937096 ~ 14937309 (-) True G46680
TU55218 lncRNA upstream 497362 15012247 ~ 15012450 (-) True G46711
XM_026945080.2 mRNA downstream 1614 14368187 ~ 14387373 (-) True ddx43
XM_026945088.2 mRNA downstream 2388 14368187 ~ 14386599 (-) False ddx43
XM_034302135.1 mRNA downstream 196744 14182019 ~ 14192243 (-) False ccdc85a
XM_026939319.2 mRNA downstream 320009 14056142 ~ 14068978 (-) True vrk2
XM_034302995.1 mRNA downstream 355270 13852493 ~ 14033717 (-) False LOC117596880
XM_026932173.2 mRNA upstream 6053 14520938 ~ 14595086 (-) True LOC113537600
XM_026942525.2 mRNA upstream 116010 14630895 ~ 14642737 (-) False ogfrl1
XM_026942516.2 mRNA upstream 116010 14630895 ~ 14642735 (-) True ogfrl1
XM_026936856.2 mRNA upstream 158196 14673081 ~ 14778488 (-) False smap1
XM_026936847.2 mRNA upstream 158196 14673081 ~ 14778488 (-) False smap1
XR_004577668.1 other downstream 196744 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 1357791 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 1654705 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 1720096 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 1720422 12668493 ~ 12668565 (-) True trnak-cuu_2
TU55100 other upstream 264980 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 899056 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 2464246 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 2464246 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 2464246 16979131 ~ 16982729 (-) False morn4

Expression Profile