RNA id: XM_026939881.2


Basic Information

Item Value
RNA id XM_026939881.2
length 2979
RNA type mRNA
GC content 0.50
exon number 16
gene id epas1b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21348210 ~ 21384116 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcctgtgtgtgagtgtgtagaagtgtgtagaagtgtgtatgagtgtaggagtgtgtgcgCTGAAGAGGTACAAAGTTCTTCAGAGTTTTTTCAGACCGGTAAAAGCGCGACCTTGTCATTTCAGCGCTGTGGAGTGCTCGGATTGTACCTGTGATTAACTGCTGGAAGGCTATACGATCCTTGGCAGTGTTCTGAGACTGTATAGCCTCAATTTTTCTCTGATTGAATCCGGAGTGGATtttatctgtttcttttttttttttttttttaactgaaaacaaacacgcgtaacttttctttttttgggttgttgttgttgtttagccTAAACCTGCACACACCCAGGAGTTATTATTTGTCATTGTCAAAATATCATCGAGACcgaagtgcgtgtgtgtgtgtatatatgtgtgtgtgtgtgtggaagtgtgtgtgtgtatgtgcgcgcgcgcgtgtgtgaaTTTCGGAGAAATTACTGGAACAGccagtgtgtgagggagaggtAACTTCTGAAGATGACAGCCGAGAAAGACAAGAAAAGGAGCACGTCAGAGCGACGGAAGGAGAAATCTCGCGATGCAGCTCGCTGCAGGCGCAGTAAGGAGACGGAGGTGTTCTATGATCTGGCGCACCAGCTACCCCTGCCTCACAGCATCAGCTCCCATCTGGACAAGGCCTCCATCATGAGACTGGCCATCAGCTTCCTCCGCACATGCAAGCTCCTCACATCAGGCTGCAGAACCAGTGAAAcagacatagacagacagatggacagtctTTATTTGAAGTCACTAGAAGGCTTCATCTCCGTGGTAACATCAGACGGAGACATGATCTTCCTCTCAGAGAATATCAACAGATTCATGGGGCTGACACAGGTTGAACTAATAGGTCACAGTATCTTTGATTTCACCCATCCCTGTGACCATGATGAGATACGTGAGAACCTGAGCCTCAAACCTGGTGTGGGGAAGAAAGGCAAAGAATtgagcacagagagagacttCTTCATGAGAATGAAATGCACTGTGACAAGTCGAGGACGCACCGTCAACCTTAAATCAGCCAGCTGGAAGGTGCTACACTGCACAGGTCATCTTAAGGTGTATAACAGCTGTCCTACACGCACTCTATGCGGATATAAAGAGTCACCACTCACCTGTGTGGTCATGCTCTGTGAACCCATCCCTCACCCCTCCAACATCGACACACCATTTGACAGCAAGACCTTCCTCAGCCGACACAGCATGGATATGAAGTTCACCTACTGTGATGAGAGGGTAACTGAGTTAATAGGCTACAGTCCTGAAGAGCTCCTGGGTCGCTCTGTGTATGAGTTCTACCATGCCCTCGACTCTGAAAGTGTCACCAGAAGCCACCAGAATTTATGCACAAAAGGGCAGGCTGTGAGTGGACAGTACCGGATGTTGGCCAAGCATGGGGGCTTTGTGTGGGTGGAGACTCAGGGCACCGTCATTTACAGCAGCCGCAACTCTCAGCCACAGTGCATTGTGTGCGTCAACTACGTCCTGAGTGATATTGAGGAGAAGTCCACAATCTTCTCTAAAGACCAGACAGAGTCTTTGTTGAAGACACATATGAGCAGTTTCTTCAGCCAGGCTGGATCTACCGTGGCCTCTGAGACTGGTGGAGCTCTCTTCACCAAGTTCAAAGAGGAGCCAGAGGATCTCACCCACTTGGCACCGACTCCTGGTGACTGCATCATCCCCCTCGACTTTGGTCCTTCATTTGAGGAATACCCAGGGTGTTCTAAAGTTTCTCCCATGCATCCTCCTGCCACTCACTCTGTCACTGAGGGCCACAACATGCCTAAAATGGGTGGCGCCTTCTCTATACCCCAGGCTCCACCACCCAGTAGTGCCACTCCCAGCATAAGCAGCTGCTCTACGCCCAGCAGCCCGGACGATTACAAAAGCCCAGTGGATGACCTGAAGATGGAGATCACAGAGAAACTGTTTGCTATGGACACCCAGGGGAAAAACTCCTACAGCCAAGAGACTGACCTGAGTGATCTGGACCTGGAGACATTGGCCCCCTACATTCCAATGGATGGTGAAGATTTCCAGCTAAATCCCATCTGTCAGGAGGAGCCTCTGCCTGAGGCTATTGCTCTGGGCATTAATCAGTATAGCTTCAGCAACATTGCCAACTTCTTCCAGCCACTGACCCCACGTCCAGAGGCCCACTTCCAGCCCAACCCACACTCTGCTAGTGAGAAGCAGGCACCCAATGCTGCCACAATGGACCCCTGGCCCCCCATATTTTATGCCAACCCCATGCCTGTGGCACACCCCACTAACCCAGCCAGCACACCACTAGCCTCTATGGGAGGGCATCACAGTTTGCAGTGGCCACCTGACCCGCCAATAAATTTCTCCAATACCAAAGGTGGTGTGATAGACTCGTTGGTGGAAAACCACTCATGCCAAGCTCTGCAAACAAATTGCATGTCCCGCCACAATCAAAGGTCCATGGAGAAATACAGACCTTTTAAAGCCTACAGAGACATAAGCCCAGTCTGGCTCACAATACCAAACACTATGAAGCGCTCATTTTCGCAGACGAGCATGGGGTTATCATCTGCTACCAAGCCACCAGAGATGTGGAAAAGGATGAAGAATGAACGCTGTACCATTTTGAACAGGATGTCTCAAAGCAGCAGTGCCTTAACAGATGACCGCATGGGCTACCAGCAAAGGAAGACTCAGTATCAAGGTAATCAAACAGGGCTGGGGAAAAAAGACTACCCAGAACAGTGCTGTAACTACACAGACCACAACATGCTGCCCAACACAAAAATGGAAGGTGTGGCGAGCCGTCTGCTTGGGCCCTCGTTTGAGATGTACTGTCTGCCCGAGCTGACACGTCATGACTGCGAAGTGAACGTCCCCCTGCAAGGCAACCTGCACCTGCTGCAGGGCCGTGATCTACTGTGTGCTTTAGACCAGTCCACCTAG

Function

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0030182 neuron differentiation biological_process
GO:0001666 response to hypoxia biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59513 lncRNA downstream 132871 21216658 ~ 21216886 (-) True G50318
TU59503 lncRNA downstream 143796 21204676 ~ 21205961 (-) True G50309
TU59489 lncRNA downstream 159015 21190535 ~ 21190742 (-) True G50295
TU59482 lncRNA downstream 165321 21183830 ~ 21184436 (-) True G50290
TU59454 lncRNA downstream 232395 21116647 ~ 21117362 (-) True G50264
TU59831 lncRNA upstream 3627 21387743 ~ 21422129 (-) True prkceb
TU59853 lncRNA upstream 128489 21512605 ~ 21512822 (-) True G50619
TU59858 lncRNA upstream 131036 21515152 ~ 21515642 (-) True G50624
TU59860 lncRNA upstream 133699 21517815 ~ 21518078 (-) True G50626
TU59884 lncRNA upstream 222312 21606428 ~ 21610897 (-) True G50647
XM_026943393.2 mRNA downstream 18699 21276785 ~ 21331058 (-) True srbd1
XM_026933654.2 mRNA downstream 139383 21207017 ~ 21210374 (-) True six2a
XM_034302848.1 mRNA downstream 324142 21010692 ~ 21025615 (-) True prepl
XM_034302948.1 mRNA downstream 412120 20886598 ~ 20937637 (-) False lrpprc
XM_026942151.2 mRNA upstream 8331 21392447 ~ 21478705 (-) False prkceb
XM_026942143.2 mRNA upstream 8331 21392447 ~ 21478705 (-) False prkceb
XM_034302943.1 mRNA upstream 138092 21522208 ~ 21526777 (-) False mcfd2
XM_034302941.1 mRNA upstream 138092 21522208 ~ 21526755 (-) False mcfd2
XM_026934302.2 mRNA upstream 138092 21522208 ~ 21526722 (-) True mcfd2
TU58946 other downstream 980328 20357988 ~ 20369429 (-) False gng2
TU58944 other downstream 980660 20357934 ~ 20369097 (-) False gng2
TU58943 other downstream 980660 20357988 ~ 20369097 (-) False gng2
XR_004577815.1 other downstream 1682096 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 2030024 19316487 ~ 19319733 (-) True G49195
TU59887 other upstream 227658 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 512068 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 565739 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 651169 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 1390239 22774355 ~ 22788783 (-) False znf318

Expression Profile