RNA id: XM_026939926.2


Basic Information

Item Value
RNA id XM_026939926.2
length 7119
RNA type mRNA
GC content 0.46
exon number 6
gene id rab11fip5a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19318825 ~ 19339637 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTAGTATGCGGGGACGGACCCGCGCGGAGCTTTCCGGTACTTCCTCGTGTTGCGGGAGGATAAAGCAGTGACGTCGGCGGACTGATTCGGTGGCAACAGCGCCGCAAAGGCAAGACTCCTCGGCCGAGCTGGAGAGAGATACGAcgcgaaacacacacacacacacaccgggagAACGTGATTGATACATTTATCTGAGGCAGGCAGTCTCATACCGTAGCAGGCGTACCCTCTGACAGAAATCATGCTTTGTCGCGGGGAAAGAGATTGAGGCTGAGGCTGACGCTCACTCTGCTGCAGCAGCGCAGTACTCGGGCTTCACGCGACGGTGCTAGACTTGTAACGTCACCGTCCGTCCCGCGGTCTATGTCTCGGAGCCGCGAGCACGCGCGCCCATGGCCTCGGTAAACAGGGACGAGGAGCAGCGATGGGTGCCGACGCACGTGCAGGTGCTGGTGATCCGCGCCCGCGGGCTCCGCGCCAAGGGCAAGCACGGCACGAGCGACGCGTACGCCGTGGTGCAGCTCGGCAAGGAGAAGTACTCCACATGCGTGATGGAGAAAACCACGGAGCCCGAATGGGGCGAGGAGTGCTCATTCGAGCTGCAGCCTGGAGTGCTGGAGAACGCGGGCCGCGACGCACACCCGGCGGGCACCTGCGACCTCACCTTCACCATCATGCACCGCGCGCTCATCGGCCTTGACGTGTTCCTGGGCCAGACCGTGATCGCTTTGGACAAGGCGTTCCGTGAGCGTGCGTGCATGAGAAACGAATGGTACAAGCTTCATTCTAAAACTGgcaaaaaggagaaagaaagaggggagCTTCAGCTAACAGTGCAGTTTACTCGCCATAACCTGACAGCCAGCATGTATGACCTCTCCATGAAGGACAAACCAAGGTCAGCCTTCATTAGGCTGCGTGAGCGCATGCGTGCCCGGAAACGTGGTGGAGATGAAGAGTCTTCCTCAGCCATTGTGCCTGGGGGTTACGGGGCATTAGCGCGCATGCGGGGCCGTCTGCCaagtgatggtggtggagaggaAGACTATGAGGATGACGAAGGAGGGGAGTTGAGGAGGAGTAAAATGAGGAGTTACTTCCTCCATGGAAGATTACGGAAGTCTTCGGACACGCGTTCTAGCACGTCTCTGGGCTCCGAGAGCAGCGAGTCATCTTCCAGAGGGGGCAGCCTTAGCCCAACTGCTGGCATCAGTGTAGTGGTCTCTGACCTCTCCAATTCAcccagcaacagcagcaacctGACTGCAGACAACAgcccagagcacACAGTAGCCCCCTCACCACTAGTCTCTCCTGTTAGATATGTGTTTGATGAGGTCTGTGACCTTAGCATCCCAGTGCCTCATTCCCTGACCACTGACAGTGATGCCCCCATTCTCCTGCCCTCTGTCTGTGTAAATGGAAATCCAGTGGAGACATCTCCTCTTACTCATCAACCCCCCTCACTGGTACTACAACAACCTAGGCCACAGACAGAGACCGAAAAAGAATCAAAGAAAACTCCTCAGACAAGCCCACCAGAGAAAGGCACACCTACTCAGGCCCAAACAGCCCAGTCCTCAAATATCAAACCTCAACCTAGTCCAGAGTTTCAGACTCAGCAGCCTAAAGTGGAGTCTAAATCCAAGCCTGACTTGCAGTTCCCTGCAGTAGGGCTGCTACAGAAGGGTTCTGCACTCTCTCTGTCCTTGCAGAACCTCTCTCGCCGTAAAGAGGAGCAGCAGGGCGGAGGGCCTGTAGATGGCCGACGCTGGTCCTTTGACAAAccaggagaggaagagaaggcGGCCATTGCTGCAGCACTGGTGCATACTGGGTTGATGGCCGATGAAACAGTGGTGGAGACAGCTGTGTCTGAAAGCGAGATAGAAGGTCAAGGCAAGAAGAAGCGAAGCTTGTTCTCACTTGCGCGGGCTGAAAAAGAGGAAACTGCCCAAGCTCAGCTAGCTGCAGAGGGAAGACACAGAGGCTGGTTCAGTTCTAAGGATCCATACAGTAAACCAAGCCCAGCCATCTTTCAAACTGAAGTGCCTGCCTCCAGATCAAGAATCCCCACCCCTCCTCTCCACTCAGTTGAAGCTGGAAATGCAAAGGGAGCCCTAGTGGATGGATCATCACATAATCTTACAAATTCTGTTTGCAGAACTGATACTTCAGATGGCTCTGACAAGTATACTCAATGGCATGATTTTAATGGTGATAGACTGAAACTAAACTCAAAGATTAGTACTCAGAAGATGGCCGTCCTTCCTTCTTCCTACCTGATTGAACCAACTgatccaacacacacatgtgttGAAGGTGACCTGATTGTGTCTGATAAAGCTAATGCCCTAGTAAGTCTATGTAATACAACCCCAGCATGCACTTTAATTGTAGATGCACTTTCTGACTTTGAAGATGAAGCTTATTTTATGCGCTATAGTACTCAGAAGGCGGATCTCAATAATTTTGTTCCTCAGGATGCCACAGAATCAGCTTCTGAATTTGACTCCTCATTGACTCATAACTCAAGCATAGAGTTCTCTGAACTCAATGCTCTAGCATGCCCTTACCCTACACTTTCAAACTGCACATTTAATAAGGACAAAGTCAGCGCAGTCTCAGTCTGCCaaataaatattacaccaaATGAAATGTCAGTGTTGTCTGTGACTCCTGAAACCTCAGCACTCAATTCTGAATCATTAGATTGTTTAGGCCTGGATGAAAAGTATGAACATGAAACAGTCAAATGCATTTCCTCCAAGAGGCAGACAGATGATGACACTAAAGGGTCTGTAGAAATCCAGAAGACATCTTTGCCTTACTGTAACTTTGATATTCTGGAAGCATCTTCCATTGTAACATCTGAATCTCCAAGCAGTGGTCATAATGTCCTATTGTCAAAGTCCCTCCCaaaaggacagaggagcttcaaATCAGATGGTGATATTGGAACAGGAGATGTAGAATTGAAAGAGTCTgccattaaagaaaaaacatgcttGGATGTCCATCCAGCAACATATCCATTAGGGATGTCCATTCCCTTAGGACCTAGTGACTCTGTGTTACAAGGAATGACAATGGAGAAAGATGCTGTAGGTAATCCAGGTTGTAGATCATTAGACAGAAGTGAAGTTAGTTTTGTTGGGGAAGGTTTTGATATCAAGAACGTAAAGATTCTTATGGATTCTTCTTCTACGGACACAAGCAACATGTCATTTACAAAGGAGAAAGTCAGTGATTCACCACCTAATCCATCTAAGGGAAGTTTCGAGGTTGACCGTTTACCTGAAACCCTCAGTGCACTTTGTGGGGTAGAGACACCAAATGGTAGCAGAGAGACACTATCTTTAGCACTGTCTCCTGGGTATATGCTCTCCCATAGCCTGTATGAGAGTGTAGACTCTGAGCAATACCTCACCTGTATGTCACAGCACAGTTCCCCTACCATTTCCCAACTCTCTCCAGTGGCCAGTCTGGAAAGTGACAATTTTCAAGAAGGCAAGCCAAAATCTGGTTCATCCCAGGAAGTCCTGACAACAAATGACCAATCTCAGAGGACCATTTCAGAACTACAGCAAGACCCAGCTGAGATTTTTCAAGATGCTTTGCCAAAAATTGGAGGTGTTTCTCAATATGATCCTTCAAACCTACCAGTATCTCTTACCTTATTGCCAAAACCTGTCTCTTCACAGAATACTTTAGCAAAAAGTGACATTGTAAAAAAAGCCATAACAGGTACTGTTACAAATGGATCAATACAAAATTATGATCCTCCAATGGACTCAATGATGAACCATGATTTGCTACATGAGAGAATTCCTGATACCTTTGAGCTGATGAGAACAAGGGGAGAGGAAGAAATTTTAATGTTAGATCCTCAAACATTTATGGATAATGATATTTGCTCAACTGAGCCTTATCAGTCCCGCCATGTCCAACGTGATGGTGCTCTAGAGGATCTGGAGATTATCACAGATTTTTGTCAGTCCACTGAGAATATGTGTGTCTCTGATTTTGTATACGAGCCAACCTCTAGCATTACTCAGGACTTGGTTATGACAGATTTGCTCCTGGAGAACATGTTTGTGGCCCAGCATGCTGTGACACATTCTGTTGGCACAAGCCCTGTCACACACCCTGTGCCTAGGGAGACTTGCACAAACATGGAATTGTGTCCTGATTCTATTAAAGCATcacaaataagtaaaaatacacaagcAACAATGACTGCAGCTTTTATTCCACAAGGGGAGCACTTGCACAGCGCTATACACTGGTCTACTGTTCAACCACCTCTCCCTGAACCTTCATCCCTGGACCGACTGACTTCAGGGCATGATCTCTTGATGAGCTCCCCCTTATCTTTGCTTGACCTCTCACCACTAGCCTCATCTACACCACATGTAGCAGTAGGTATTAATAGTCTGCCACTGTCCTCCTTTCCTATGCCCTCTGCTCCAGCAAGATCACTGCCGCATACTGCACTGGCTGCTGCCGCTCTTCCCCCTGTATTTGCTGCATCGCATGATTCTTTCCCTCAGGAAGAACATCAGGTAGCCTGTCACCTCAGCAGTCCGCATCCAGTGAAGCCTTTAACACCTCCAGATGAGAAGAGGTCAGAAGGGCGCTCTGTGCTGGAGAAGCTCAAGTCCACCATTCATCCAGGAAGAGGTCAACAAGGAGACCAGGAATCTGAGAAGAAGCTCTTGGTGGAGGGTGGAGGCTCCTACTACCATCTGAACCACAGTGAGCTGGTGTCCCTCCTGCTGCAGCGGGATGCCGAACTCCAGCAGGAGAAGAAGGAGTATGAGCGCCGTGGCTTGTTGCTAGAGAAGCGGGAGGTGGAGATTAAGAAGATGAAAGTTTTAATCCGAGATCTAGAGGATTACATTGACACTCTGCTAGTCCGCATTATGGAACAAACGCCTGCACTGTTGCAAGTACGTTCCAAAATGAAATGACCCGATAGAGATTCAGCAAACATTTCACTGTCACTTCACAAATCTTCCACAATCCCTGGGCAGAAGTTGCAACCCTGCACTGCTACTGCTACCATGTAAATGTAGAATGAAGCATTATTGAACAGGCACAGAAAAGATATATTTGGCATTCTTTGCTGTCTCAAAATACAGTGTCTACCTATGTGAGCCTCCCATGCGTGGCCAGGTGCACCCACCCCTTCCCTTCTTGACTCCCACAATTCTTATTCTTATAAGAATTTCTGAGAAATTTTACTTAGTTGATGCTCACCTCCTCTAAGCAGATGGACAGGTGCACCTGTCCAGCTAGTTACCAAAGTTGCCTGTCAGTCAAAGGAAGGTGTGGTCTGGTTTTTGGATAATTGGGTGAATAGTCTTTGCTGCTTGAAATAATGCGTTATCCAAATGTTCTCTTTTGTTCTTCCATTCTCCTCACATTAATGGGACCTATCTCATTTAAGCTCATAAAACTATGCTGCTTGAACAGGCCAATTCTATAGATGTCAAGttagtagttaaaaaaaaaaaaaactgcaaaagaaAGCAGAATTGGTCAATTCACATCTGCTTGTGCCTCATGTCATGTCTTCCGCACTTTACTGATAAGCATAAGAGTAGAGGCACACGTTAACCTGCTGGTTCCTCAGTCTGTGTCTGACCAGTCCCACTCCCATCCTGCTcgagctaacacacacacattgctgcCACTGCTTTCAGGTGTAATGAACAGGATATATACTGTTCTTACTGCATATATGCCACTCTGGTGAAATGCCAAATGCTGCCTTATCATATGTCTCTGTTCTGTTATTGGTGAAATCATCACTTTTCAGCTCTGTACCTTACCTTGAAGTGTGACTGTAAGGGACTGTGTGTTCAGACCTGATTACCAACAGACTGTTAGGTTAAATCAGGTAATGTCATAGGCTATTACTGCCTCAGTGTTGAGCGATGAACAAACAGTACTTTCTATAAGGGAGGTGGATGATTATGGAATACTAAATGCCAGAAGTTTCCTATAATTCAGTGTTACAGTATTCCCAGTGCAGCCATGGCTCCGGCCTGTGTCAATGTGCCTGcagtgtttttctgattttactCGGATGTTGCCACTGTCAGTGTTTTTTGCAGCATAGCACCATCTGTAGTTGTGTGGTAGCAGCCTGTGTAACAGCACTTTCAaaccacacatacacttaaTTAAATGGTTCTTCCTCAAAAGCATAAGTACTgagcaaacacaaatacatgcacatatacactgCACTAGCTCATTCTCTGAACCTAAGATATTTACAGTATTCCTGTGCTACTGTAATTCTTATAGTCCAGCTAAGCTAGAAAATCAGAGATCAATATATTACATGTAACTTGTCAAAAACGTACAATTAGACGCACTTAAGGTTTCACATGTTCTGCCTCTTACTGAATTATGATCTCTAGCTCTTAGGTTGTGATTGATTATATAAATTGAATGACTTAGACTGGTATGGTACTGTGTCGTTTGAGTGGACTCATGGAATATTAATGTCAGTCAGAGACTAAAGTTTACAATTCTTAATAAACCTGTTGTTTTACCTTTGTATGTCCTTATTTAAAGGATATAATATTTaagctttgttttcttttttccttttttcttttttgccctTTAATTTGCTGTTCCACAGAGGTTATGTAAAGTTCTATTATCTGTTCTAAATTCACTTTTGTGTCACTTTTACTTTCTTACCTTTTGTTCCATTTTATCATCTAttgaagttgtttatttatttttccttttaggTTTTACtgccttttatttttatgcccTGGTGGAGAATATGCTGTTCTGTCAAACTGTGTTCGTCAAGATGTTTTCACGTTTTCTCTTTAGAAGTCTTATAATGTAGGAAGCAATAGTGCAGAGTGCTAGAGAACTGTGAAAAGCCAGATACAGCCTGCAGTCCAGTTAGGAGGAACAAGTGCCCTTGACTTAATGTCATGTTGTAGAATGTGTCGGTGGAATGAGTATAGAAACCATTATTTGTGATTTTAATTGTTAATTTGTGAATCAAAGCTGCATTTCTGTCGCAGAACCTCTGGTaagtttgaaaataaaaacaattatttgtgtttattcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58126 lncRNA upstream 23694 19295082 ~ 19295293 (+) True G49157
TU58109 lncRNA upstream 51398 19266545 ~ 19267589 (+) True G49146
TU58106 lncRNA upstream 61827 19256096 ~ 19257160 (+) False LOC113539574
TU58081 lncRNA upstream 102107 19214792 ~ 19216880 (+) False grxcr1b
TU58057 lncRNA upstream 115300 19202230 ~ 19203687 (+) True G49104
TU58135 lncRNA downstream 1718 19341355 ~ 19345343 (+) False sfxn5a
TU58192 lncRNA downstream 61014 19400651 ~ 19400883 (+) True G49214
TU58299 lncRNA downstream 275080 19614717 ~ 19617317 (+) False G49316
TU58301 lncRNA downstream 275080 19614717 ~ 19617317 (+) False G49316
TU58302 lncRNA downstream 275080 19614717 ~ 19617317 (+) False G49316
XM_034301756.1 mRNA upstream 56899 19256064 ~ 19262088 (+) True LOC113539574
XM_026942722.2 mRNA upstream 64633 19252850 ~ 19254354 (+) True mrps26
XM_026934003.2 mRNA upstream 68565 19247018 ~ 19250422 (+) True si:dkey-33c12.3
XM_034303175.1 mRNA upstream 75114 19237356 ~ 19243873 (+) False si:dkey-33c12.4
XM_026932072.2 mRNA downstream 1713 19341350 ~ 19354680 (+) False sfxn5a
XM_026945763.2 mRNA downstream 63295 19402932 ~ 19410091 (+) True cdc25b
XM_026945771.2 mRNA downstream 63298 19402935 ~ 19410091 (+) False cdc25b
XM_026933896.2 mRNA downstream 73034 19412671 ~ 19426321 (+) True ap5s1
XM_026933276.2 mRNA downstream 176684 19516321 ~ 19604187 (+) True gfra4a
TU55884 other upstream 3082339 16234535 ~ 16236648 (+) False lrrc18a
XR_003404341.2 other upstream 3245920 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 3247067 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 3521783 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 4951541 14361367 ~ 14367446 (+) False cgas
XR_003403773.2 other downstream 1713 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 1713 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 1713 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 1713 19341350 ~ 19356098 (+) False sfxn5a
XR_003403775.2 other downstream 1713 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile