RNA id: XM_026939991.2


Basic Information

Item Value
RNA id XM_026939991.2
length 4685
RNA type mRNA
GC content 0.46
exon number 10
gene id trim9
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12485749 ~ 12507596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGGCAATCAGTGGTGCTTGTGGGTGAacggagatttttttttctcttccgcTGCTAACAAAGCTAAATCTGAAGATGGAAGAAATGGAAGAGGAGCTGAAGTGCCCTGTGTGTGGCTCTTTTTTCCGCGAGCCGATCATCTTGCCGTGCTCGCACAACATTTGCCTGGCCTGCGCTCGGAACATCTTGGTGCAGACGCCGGACGCTGAGTCTCCGCAGGGCGGCCGCGCTTCCGGCTCAGCGCCGTCCGATTATGACTACCTGGACCTGGATAAGATGAGCCTGTACAGTGAGTCGGACAGCGGCTACGGGTCTTACGGCGGCTTCGCGAGCGCACCCACCACCCCTTGCCAGAAGTCACCTAATGGAGTGCGTGTGTTCCCGCCCGCTGCTGTTCCCCCGCAGCAACCTCAGCACCAGCTGCTCCCGCAGCCCATGGGCACACCGCCGATTCCACGCAACGCCTGTCTGACGTGCCCGCAATGCCACCGCAGCCTGACCCTGGACGAGCGTGGCCTGCGCGGTTTCCCCAAAAACCGGGTGCTCGAAGCCGTAGTGGACCGCTACCAACAGAGCAAGGCGGCAGCTCTGCGCTGCCAGCTGTGCGAGAAAAGCCCACGGGAAGCCACAGCTATGTGCGAGCAGTGCGACGTGTTTTATTGCGACCCGTGCCGCCTGCGCTGCCACCCGCCGCGAGGTCCGCTCGCCAAACACCGCCTCGTACCTCCGGCGCAGGGACGCATCAGCCGGCGCGCCAGCCCGCGCAAAACCTCCACCTGCACCGAGCATGAACTGGAGAACCTCAGTATGTACTGTGTGCAGTGCAAGACACCTGTGTGCTACCAGTGCCTCGAGGAAGGCAAACATTCCACGCATGAAGTCAAGGCACTCGGGGCCATGTGGAAGCTGCACAAGgGGCAGCTCTCTCAGGCACTGAACATCCTGTCTGATCGAGCCACTGAGGCCAAAGAGTTTCTTGTTCAGCTCAGAAACATGGTGCAGCACATACAGGAGAATGGAGTTGAATTTGAAGCGTGCTTGGTGGCTCAATGTGACGCGCTGATTGATGCTCTGAACCGCCGGAAAGCTCAGTTACTGGCCAGAGTGACCAAAGAGCACGAGCACAAACTCATggTGGTACGTGATCAGATCTCTCACTGCACTGTGAAGTTGCGGCAGACGACGGGGTTGATGGAATATTGTCTTGAGGTCATCAAAGAAAATGACCCCAGCGGCTTCCTGCAGatctcTGATGCACTGATTCGTAGGGTGCATATGACTGAGAGTCAGTGGGGTAAGGGCACACTCACGCCACGTATGACCAGTGATTTTGACCTGACACTGGATAGCAGCCCATTACTACAAACCATCCACCAGCTTGACTTCGTACAGATGAAGGtaccTGCAGCTCCAATCCTGCAGCTGGAGGAGTGTTGTAGTCAGACCAACAGTGCCACTCTGTCATGGAAACAGCCTCCTCTCTCCACCATCGCTGTGGATGGCTACATACTGGAGCTGGATGATGGCAATGGAGGGCAATTCAGAGAAGTGTACGTTGGCCCTGAGACGATCTGCACAGTGGACGGACTTCACTTCAACAGCACGTATAAATCTCGTGTTAAAGCCTTTAACTCCAGTGGAGTGGGGCAGTACAGCAAAACACTCGTCATGCAGACCTCCGAGATTGCCTGGTTTACCTTTGACCCTGCATCTGCCCATCCGGACATCATACTGTCTAATGACAACCTCACAGTCACGTGTAATAGTTATGACGATCGTGTTGTCATGGGCAACACGCCCTTCTCCCGTGGTGTGCATTACTGGGAAATGACCATAGATCGCTATGACAATCACCCAGACCCTGCGTTTGGGATCGCCCGAGGTGACGTGCTGAAAGACGTAATGTTGGGAAAGGACGATAAAGCCTGGGCCATGTATGTGGACAACAACCGCTCCTGGTTCATGCACAACAACTCCCATACCAACAGaacGGATGGAGGGATTGGTAAGGGAGCAACTGTGGGTGTTCTGTTGGATTTCACCCGGGggattctgttgtttcttaTCAATGATGAGCAGCAAGGTCCTGTGGCTTTCGACTCATTGGAAGGTCTTTATTACCCTGCCATCAGCCTCAACCGCAACGTTCAGGTGACTCTTCACACTGGACTGCCCATTCCAGATTTCTACACACTTGGAGAGTCAGATCCTTCAGGCTCCGTCTGCTGAAGACCAacataccaacacacacacacacacacacacacacacacattgatggATAAGATTTACACTGATATTCAGTTCTCAGCCTTTATGTGAAATTCTGGGTTGGTTTAGGAGTTCAGTGCTTTTTAATAAGCTTAGCTGCTAGTTACAGCTGTTCAAAttaatttactttactttatgaCAAGCAGAGGCAGCAGGAGAGCAGAAAACTACTGTACATTTCTATTTGTAATCCCAAAAAGCCAGAGATTTTAGGTGTAGTTTTGAGAGTATTAGACTATATGttgaaatactgaaaaaaaaatgttgattttctCCCTCCCACAAAACACTGCCATTATGCTACAAGGTTCAGGCTTGCGTCTCATTCCTTCTTCTCTAATTACTTCATTTAATCATTGGTCAGTTCATCAGATAGAAGAGGAAAATCAGCATGGTGCCATGCATGTAATTTCATAACAATATGCACAACTCAATTTATATGAAAGGGCACAGTGAGTAGCATTGCcaccttgtagctccagtgtcCCTGGTTCGAACCTGAGCTTGGGTTtttgtctgtgtggggttttgCATGTTCTGAGGTTTCCTGCAcctccccaaaacatgccagtaggtcgattggctactctaaaatACCCAAGGTATGTGTACATTGTGccctggcatcccatccagggcgTGTTTCTGCCTCGTACCTGGGAGATACACCGTGGCCcacggttactgaagatgaatgaattaatgaatttataTGAAAAGTTGCaactgccccctgctggtcaAGGTTAGAGCTAGTagcatttctacattttcttaTAACTTCATTAATATGATCAACTACATCACCCTCACTACAAATGTGTACAAATTTTCCAGGttcagaaaatgttattttagaaataacaGCCCAAATATTGTGATAACTACTAACAGCAAAGAATAATATTccttatgtttattattatattattattattattattattattattatagttggTGCTAAAACATTAAGACATGTGGCTCTGGTCCGATAAGCCTATAAACTACAGAGTCCAGGCAGattttatacttattattattactgatcaTATCTTACTGATCTGTGCAAAGTGAATATGTGCAGAGATAAATTATGAATCTGTAGAGGTTATACAATGCAGTTTATCATTATAATTGGACTATGTGCAGTTGGTTCAGTATAATGTGTTAAATGGAAATTTTCACACAATGACTGAAATGTCTGTGTGGCCTTTACTGTGCTTTCTTTTTTGTAGAAAGCTGAGAAATTTTAGGACATTTTGTCCTCACATATTACAAACTCACACTACACATACTGCACCCTATTTACCAATAAATGCCAATGCCAAATTTTCAATgactggaaaataaaaatttaaacttTATGGTATAAACTATATTATCACTTGACGCTGTACTGAATCATTCTCATGGAGTTCAATGATGAGAGTGTCAGTATAGTAATTTAACAGTAATGAAGAGACACTGGGCTGTCTCTCACTCGTATACACACACGCgtacaggcacacacacatacaggcacacacatacaggcacaGCATGAACACTTACTCCACAACAGTCCCCCTTCTGGCCAACACACATATTCAGcagcagtacacacacatacacatttctctctctctctgtcccctccGTTTGTTACTGCCTCAGAGCTGTACAGGCAAATCGCTAATCTTTATTGAAAAACTGGTGCTGCTTCTGTTTATATGTCTGAAAattacagtactatatatatagatagatatatatatatttgtgttattaCCTGCAATATAACAAAAAGCACAGCtttaaatccaaaaaaaaatagtaattcaGAAACTGGCAATATGTTTTATGTTCTAGAAGTGCTAGACTCCATAGAGTGGATGTTTGCGTGGCTCCATGTCATTAGATGTGGGGGATCCAGGCTGCTAATGCAGTGGTGCAGTGAAATAGCTGCCTTTATTTGCATCACCAGACATGTGTAGcctactttaaaaataaattcctgaGCCTGTTTGTCAACTGACTAATACAAGGATACTCCTCGGACTGATAACATGTGGCTTTGTTGTGTtgtacgaaaaaaaaaaaaaaaaaaaaaaaactacagaactGCATGAACACCTAcaatgctgaaataaatcttACAGTGTTCATTTGAGGTGAGAAGGGAGACAAATAAACACTTACCGGAGTGTATCAAACGCTGTAGGCCTTCAGTCAACACCAGTTTTGCTGTTTAAGGAGCCAAAAGTGTGGGTGTGGGTGACTGTACAGGggatctttattttctttatcatAAAGTAATCCCTAATGTGAAcaataactttattattattattattattattattattattattatctggcGCTTGGTGCATTCTGTAACCGTACAGTATATTCAATAAATGGGTTGAGTCAA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53462 lncRNA downstream 50266 12435274 ~ 12435483 (-) False nin
TU53441 lncRNA downstream 116400 12368513 ~ 12369349 (-) True G45249
TU53414 lncRNA downstream 182208 12290327 ~ 12303541 (-) True G45236
XR_004577842.1 lncRNA downstream 243628 12241609 ~ 12242121 (-) True LOC117596852
TU52939 lncRNA downstream 464281 12010931 ~ 12021468 (-) False pwwp2b
XR_004577879.1 lncRNA upstream 119450 12627046 ~ 12627481 (-) True LOC117596889
XR_004577878.1 lncRNA upstream 120081 12627677 ~ 12628388 (-) True LOC117596888
XR_004577880.1 lncRNA upstream 120876 12628472 ~ 12629256 (-) True LOC117596890
TU53526 lncRNA upstream 207088 12714684 ~ 12717329 (-) True G45305
TU53555 lncRNA upstream 212033 12719629 ~ 12721353 (-) True G45324
XM_026939970.2 mRNA downstream 123 12472527 ~ 12485626 (-) True pygl
XM_026940747.2 mRNA downstream 20686 12435109 ~ 12465063 (-) True nin
XM_026940765.2 mRNA downstream 20688 12437823 ~ 12465061 (-) False nin
XM_026940757.2 mRNA downstream 20693 12435110 ~ 12465056 (-) False nin
XM_026932564.2 mRNA downstream 54105 12422281 ~ 12431644 (-) True sav1
XM_026932212.2 mRNA upstream 23326 12530922 ~ 12534215 (-) True LOC113537616
XM_034301495.1 mRNA upstream 38282 12545878 ~ 12552407 (-) False LOC113537655
XM_034301490.1 mRNA upstream 38282 12545878 ~ 12550564 (-) False LOC113537655
XM_034301500.1 mRNA upstream 40641 12548237 ~ 12553072 (-) False LOC113537655
XM_034301503.1 mRNA upstream 40641 12548237 ~ 12552894 (-) False LOC113537655
TU53378 other downstream 333243 12144895 ~ 12152506 (-) False tmem254
trnag-gcc_1 other downstream 777065 11708614 ~ 11708684 (-) True trnag-gcc_1
TU51003 other downstream 3256865 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 3631955 8801243 ~ 8853794 (-) True G42967
TU53492 other upstream 17040 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 23847 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 124217 12631813 ~ 12633015 (-) False LOC113539135
trnae-cuc_8 other upstream 131656 12639252 ~ 12639323 (-) True trnae-cuc_8
trnak-cuu_1 other upstream 131934 12639530 ~ 12639602 (-) True trnak-cuu_1

Expression Profile