RNA id: XM_026940077.2


Basic Information

Item Value
RNA id XM_026940077.2
length 3387
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC113542496
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5718697 ~ 5729662 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTTCAGACACTCTTCTGACACTCATAACGATTGCATAAGGCACAAGCACAAAGGAATTTTCACTACTACTGAGTATAGAGCCACTAAAGTCATCTCAAGACTAAAGCTTTAAGTGCTGATGATGATTTTCACAAATCTGCTGATCAAGATATTGAGCCATCTATATCTTATAATGATCCTCATGGCAAGTCAGACTCTGGCCTTTATGCCTTTGTTGTCGAAATCCAGGACGCATAAGGACATAACTCGTGATGCAATTTTACAGACAACGGCCGATATCTGCAAATCGCGAGCACTCCAGGAGGGACGAAATTTCGTTCTGCCAGGTGCACTGACAGTAAAGTCAGTGGCAGGAAGTTGTTACTCATCTGATTCAGCCAAAGATTTTCAAAGCAGCCTTGATGAGATAATAATGTACAATGCATGGGTGGACATTAGGCATCCTTTTACTGCAAGTTACCATTTTGACAATGAGGAGTTTTTGTCTGGACATCTTATTACTAAAGGAGTTTCTGCTGTCAAAGACAGTGTCAAGCAGCAGAGCTATCAAGCTGCCCGAGAGGCACTTGGTAAAATCCTACACACTTTGCAGGATTTCTACAGTCACAGTAACTGGATTGAGCTGGGAAAGAGAGAACCCTATTCCAACCTGATTAAACCAGACACCCCAATCAGCAACATAGCAGATTCAGAAACATGCAGCAAATGTGTTGATGACGTCTGCGTAGGAAACATCCTGCAGGAGGTCATAACACAGCAGAAATTAACATCAGGGTACTTTGGCTTATCCAAACCGAAAGGAAAGTGCAGTCATGGAGGAAATGCTGACCTATCAAGTCAGGGACAAGGTGGCATAAATAAGGATACTACAACCTCCAGCCATGGTTATCTACATGAAGTGGCAGCATCAGTGGCCACTGCTGCTACCAGAGAACTACTGCAGGACATAAGAGCAGCAGTTGGAGATTCTGAGTTTCTTAGAATGCTGGGACTCAGCCAGACTTCAGTGCTGTGTTTTGTTATCGACACCACTAGCAGCATGTCCGAAGATATTGACGAAGTCAGGAGAGTTACTTCATCTATTGTTGACAGTAAAACAGGAACTGCAGCTCAAAGTTCAGAAtacatcctggtgccatttAATGACCCTGATTATGGCCCACTTACCAGAACAACTGATGCTAATGTGTTTAAAGAGCAACTCAACGCACTTACAGCTGCTGGTGGGGGAGATTCTGCTGAAATGTGTCTCTCAGGACTCCAGCTCGCCCTCACTGGATCTCCACCACAGACAAAGATTTTTGTTTTCACCGATGCTGATGCAAAAGATAAAGGGTTGAAAAATACTGTGCGAGCACTGATTGAGAGAACAAAGTCTGTAGTGACTTTCATGCTAACTAACACCACTAGTTCTCGGCGTCGCAGAAGGAGTGCCGAGCGCGCAGATGGCCAACAGCAAGTTTCCCCCCAGCTTTTCAATTCACAGGTCTACCAGAACCTGGCCCAGGCCTCTGGGGGCCATGCTATTGAGGTCACCAAACAAACACTGTCCCAAGCTATGAACATTATTGCGGTTACCTCCAGATCTACACTGGTCACTCTATTCCAGGCTGTAAGAAACCCAGCAAAAGCTGAAAGCTTCTCAGTCTTTGTGGATTCTTCTGTGCAAAACCTGACAATTTACATCACAGGCAACTCTCCAGATTACACCATTACTAGTCCATCAGGAGTCTCACAGATCAGCAGTGAACTGAATGGGGCTCTGGGGCTTATTCAGAGAGTTGGTAACTTTCACACAGTGCAACCAAATGTCGCAGAGCAAGCTGGACTGTGGCTCTTCAGTATTAAATCGACACAGCCCTATAGCATCAAAGTTGTTGGTCAAAGTGAGGTTGACTTCCTCTTTGACTTTGTAGAACCTTCACAAGGGCTTCATGCAGGCTATGCTGAATTAAACAGCAGGCCTGCAGCAAACAACAACGTCACACTGTTGGTGACCATGGTCGGTGCGGACAGCGTGAAGCCTACAGAGTTGTCTCTGGTCGAAGCCTCAAGTTCAAACTCTTTTAATGGGATACTAGAAGAGGTAGCAAGTGGGCAGTACTTAGTGACCTTCAACAGCATCCCAGCAGGAGAGTTTACTGTTCGTGTGGTTGGACAGATCAGTTCCTCTCGATCCACAGATTACAACTTTCAGAGACAGTCACCAACTCAATTCCAAACATCAAGTGTGAACATTACTACACAACCTGTTGGAACAGTGGAACCAGGAAAACAACTCACTCTGCCTTTCACAGTGGCAACCAAAGGCTCTGGAGGAAGCTTTAATATCAGAGTCAGCAATGATCGCAATTTTGACACTCTCTTTAACACATCCTTAACTCTCGAGAGTGGGGGCAGTGCGAATGGTACAGTAACTCTGACTGTTCCTGAAAATACTTCCTCCGGAACTGACGTCACTGTGACAATTGAAGCTGAAGCACCAGATGGAAGCGACTTCAACTACGCTGTGCAGCGCATTGCTATTGTTGCTCCGGTAAAAGATATTATTCCTCCAGTATGTGAGGCAGTTACCGTAAATACTAACTGCTCAGACAACTGCAGTCTCTCCTCATGGTACCTCACTGCCAACATGACTGATGGGTCAGGTATTCAGAGTGTGAGAGTCCTCAAGGGCAAAGGAACACTCAGCACCACCAGCGTGCTCAATGCCACAGGCGTGAATGTCACTACGGCAGTCTACAGCTCATCTTGCTGTTTCCGAGACTTGGAGCTGGTTGCTGTGGATACAGTGGGAAATGTTGCCACTTGCTTCAAATCTACAGCTGCACCAAGCATCCTCACTTATGGTGCAgaattttgcttgtttttaccAGTCTGCCTTTGGCTTAATATAGGAGTCTCAATTTACCGATTCATgcagctctaaaaaaaaaaattaaatggaatAATATCAGCATATTTAGCTCTGCATAATATCTGTTCAGTAATCCTTTAATACAGAGTGAGTAGCGAATATATGAAATACATTCTAACCAAGTCAGTAAGTAACTAGAAGGAAATCTTACTTACCTACTATACTCAGTGATTTTCAACTCTAAATGTATTAGTGTTTTATTGAGGGTCTGCTGTTATTTAATGTGAATAATTCAATGTCAATGCACATGAATAACTCTTATGTTAAGCTAGTCAATTAAATACCTATCAGAAGGCTTTTACATGCAGATTTGTTTTAATCAATAGTTTTGACACACTCATGGGGGCAGTGGTGGTTTGAGGGTTAAggacttgagcaaggcccttaaccctatctgctccaggggcgctgtatcatggctgaccctgcactctgaccccagcttcctaaaaagctgggatatgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48564 lncRNA upstream 383132 5333384 ~ 5335565 (+) True G41049
TU48545 lncRNA upstream 396306 5270315 ~ 5322391 (+) True G41032
TU48535 lncRNA upstream 410579 5258551 ~ 5308118 (+) True G41026
TU48544 lncRNA upstream 448502 5264901 ~ 5270195 (+) True G41031
TU48526 lncRNA upstream 492269 5224948 ~ 5226428 (+) True G41019
TU48780 lncRNA downstream 88886 5818548 ~ 5819447 (+) True G41232
TU48872 lncRNA downstream 146486 5876148 ~ 5876422 (+) True G41299
TU48876 lncRNA downstream 487803 6217465 ~ 6228351 (+) False inpp4b
XR_004577767.1 lncRNA downstream 509705 6239367 ~ 6262431 (+) True LOC117596795
TU48917 lncRNA downstream 530943 6260605 ~ 6263303 (+) True G41331
XM_026940088.2 mRNA upstream 2659 5697206 ~ 5716038 (+) True LOC113542501
XM_026942811.2 mRNA upstream 28735 5677180 ~ 5689962 (+) True LOC113544150
XM_026937136.2 mRNA upstream 44569 5636867 ~ 5674128 (+) True frem3
XM_026937146.2 mRNA upstream 92220 5599885 ~ 5626477 (+) False si:dkey-27h10.2
XM_034302752.1 mRNA upstream 97781 5599885 ~ 5620916 (+) True si:dkey-27h10.2
XM_026940064.2 mRNA downstream 3785 5733447 ~ 5751032 (+) True LOC113542482
XM_026940056.2 mRNA downstream 7313 5736975 ~ 5751032 (+) False LOC113542482
XM_026944869.2 mRNA downstream 113904 5843566 ~ 5857230 (+) True smarca5
XM_026944878.2 mRNA downstream 113904 5843566 ~ 5857229 (+) False smarca5
XM_034302371.1 mRNA downstream 165769 5895431 ~ 6227357 (+) False inpp4b
XR_003404319.2 other upstream 362000 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 376947 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 1884086 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 3552913 2165623 ~ 2165784 (+) True LOC113546173
TU45995 other upstream 3627476 2085465 ~ 2091221 (+) False stox2a
TU49753 other downstream 1474288 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 1919536 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 2736085 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 2739962 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 4822597 10552259 ~ 10558295 (+) True sprn

Expression Profile