RNA id: XM_026940107.2


Basic Information

Item Value
RNA id XM_026940107.2
length 4266
RNA type mRNA
GC content 0.48
exon number 31
gene id washc2c
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18810075 ~ 18828322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGGTCAGGTGACTATGGAGTCAGCTGATTGTAGCAGACAGGACATGGCCGAGCAGGAGGAATACTAATGAGGCAGCGGATCATCAACAGCCACCTTTTCGCCAGGGCTGAACTAGGTTTTGGTTTTCTATGAAAAGCGCAAGCTGGGCGAAATAAATTCCTCCAAGGTAATCGCTATGGCAGAACCCATGGAGAACGGCCCCAGTAACTGCAACGGTGAGGCCGAGCAGGTATGGGAGAGACCCTGGACGTTGGACGAGATGCGGAAAAACAGCGCAAATTGGTCTCTAGCTGCAGATTCTGGGCTTTTTCTCTACCTGCAAGACTTCTCTCAGTGGATGTTGTCTAAGACGCATGAGATCGAAAAACAGTTGGATGGCCTTATTCGGGACACCAAAGCAACTGATAGCTGCCTCCACACCGTCTTTAATGACTTTCTTATGCTTTCCAACATACAATTTATAGAAAATAGGGTTTATGATGAGGAAGTTGAAGAGCCAGTCCCAAAAACAGAGGCTCAGGAGAAACGCCCTGAACAGgaaaaaacacgAGAACAGAAAGAAGCAGAGCTGATACCTAAAGTCCAGGAGGCAGTGAACTATGGTCTGAAGGTCCTGGAATGTGCCTTTGAGCAGCTGGACGTTAAAGTAGGGAACTCGGACTCTGAGGATGAGGAGGCAGCTGACAGAGTGGAGCCCATTCTGGAACCCAAGGATTTATACGTAGACAGGCCGCTCCCGTACTTGATTGGATCTCAGGCTTTTATGGAACAAGATGACGTTGGCCTGGGAGATCTCTCAAGTGATGAAATGTCCATTGACAGCGACAGGGAGAGTCTTGTTGAGAGTGAAGTGGATAAAGATCAGGAGGAGCACTCAGACGAGGACTTTGACCAAGAAGGAGAAAGCCAAGGAAGCTTAAAGAAAAAGCCTGTCAGTtctgatgaagaggaagaaaatgaagatTCTGACTTATTTGGAGAATCTGACAAGGATGAAGATGAAGCCAGAAGGGATGACGTGGGTCCAGCATCTTTTGCTGATCAGCTGGCTGCAAGAATTAAAGATACAACAAAAAAGCCAGAGGCAGACCGTACATCATTGTCATCAGGCACATCTGTCACCAAGAGGAAAAACCAAGGAAAGAAACTGCCAGAGGCACAGGtggaagatgatgatgatgatgagatgttCAAGCCTCCAAAAATGGAGGATGATGAATATTCTCCATTCGGAGGAAAGGGTGGTCTCTTTAGTGGAGGTAAAGGcctgtttgatgatgatgagGGTGATCTGTTTTCTGAGGCACCCAAAAAGGTGAATGAGCAAGCAGCATCTCAAAAAACAGagAGTGTCAACACTAAGAGAATACCCACAGGTGCAGTTTCCATTTTCCCAgAAAACAGTCTCTTTGGCTCACCAAATGGTTCAGACTCATTAATGAGTAAAGAGAATGACCGACCAGTCAAATCCAAAGTGCAGGCAGCTCGAGAACAGACGTCACAAGGAAGTGGCCTTTTTGATGAcaatgaggatgatgatgactTTTTCAGTGGGAAGATGCTCAAAAAACCCACGTCTGCTGTACAGGAGAAAGCCAAGCCAAAGATGACAGCAGACCTGTTTGgaggtgatgaagatgatgatgaggatggtgACATTTTTAGTGTGGGTTCTCGTTCTGCAGTTGCTCAGCAGAGTAAGAAAGCTGTGGAAGAGGAAGGGGTGATACAACCTCCTGAGAAAAAGTTACCTGCTGGTGCCATCTCCATGTTTGGGCCTGGCACAAATAATCTTCTTGCAGAAAGCCTGAAGAAACGTCATCCTTCAACAAGTGAGGAGTCTGTGAAATCTGAGGAGAGTATGCCCCCTCCTGTGGTCAAACCATCAGTTGCTCCTAAAACAACAGAGAAAGTGCAGAGCAAGAGTCTTTTCTCTGATGATGAGGACTCACAAATATTCCCTACTGTGCCAAAAAGTCAGTCAAAACCAGAAGGTCCAGTGCAGAACAAACCAAGCAAGGCTACGATCTCTATAtttgatgatgaggaggaggagGATCTCTTTTCCTCTGTGCCAAAATCTCAGTCAGTTCAGGTCAAAACAGCAGTGCCCCAACCCAAGAAAACTTTATCAAGTGCTCTTTTTAGTGATGATGAGGATCAGTGGATGAGCTCACAGCCCAGCCCTGCCAAGCCTGACGTGAAGAGTGGTGGGATGAAGGCTAGTACCAGTGCCCCCTCCAGGCTACCCAGTGGCAAAGCAGCACAGAAAGATAGCTTGTTTGATGACAATGATGACGATGATCTATTTGCAGCCACAAAAGAGCCAAGTCAGAAGAAACCTCAGAGAGTCTCCCTCCTGTTCGAGGATGAAGACGATGAAGACAAAGGTTCACTGTTTGGTTTCAAGCCATCTGCAGACAAAGGAACTCCGGCAGTCAAAgtgccTGCTGCTGTGTCTCAGGCTCCCTCTCTGTTTGGCCCAGAGGAAACACAGAAAGTGGCAAATGTAGCTGAGGAAAAGCCTTCAGACAAGAAGCCTGTGCAGCCAGCATCTTCCCCTGAGGAGACTACCAAGAGTAAAAAGCCTGCTGGGGCTGTTAGCTTGTTTGGAGGAATTAATGTGCTAGGAGACGAAGCCAAAACCACAACAAAACAGAGCAAGAATGCACTGGAGGACTTCGATGATCTTGACTGGCATAAGGAAACCCCACCACCCATGGAGACCAAGGAGAAGAAGGccaagaaaaacacatttagtctgtttgatgatgatgatgatgaagaagaggaaCATGATGAGATATCTCCTCTTTCCACAGCAACCAAGCATACAGACAAAAGTACATTAAAGTCTCAGGAGCCAAAAACTTTTGTGAAGAGCACAGGTGTGTTTCAGGATGAGGAGCTTCTGTTCAGCCAGACGCAGCAAAGAGACAATGACCCAGAGGTGGACCTCTTTGCTACGTCTGCTAAACCCTCAGCACCTGTACCTAGCTCAGCGAAGCCCGCTGTTTCTACACTGTTTGGGGAGGACGAGGATGATGACGACCTTTTCAGCTCTGCAAAGCCAAAAGCTCCACCGAAAGTACCAGACAAGCCAAGTAAGGCTAAACTTGAAGAAACCGACAAAGGTGCAAGTACAATACAGTCAGCTAAGAGTGAGGCTAGTTTGGCCATCAACCCTGCCAGCCTCATGCCAGGAGCAGGTCCACGGGTTCCAGGTGCAGTCAGCATAACCCCTGATCTGACTCAGTCCAGTTCACCCAGACCTGCAGGGCTGCTGCCTGCCTCTGCGGCCACTGCGGGACTCCAGGTTGCTGCTGAGGGAGGGATCAGCTTTGACTCCCCAGCTCAGGTCACAACATTACAGAATGCCAATAAGGACCGCGTTAAAGGCGCAATGCATCGGCGTCCCCAGACACGTGCAGCAAGACACTTGGCTGCTCAGCGCTCTGAAGAGGCTCGATTGGACAGCCCGGAAGAAAACTCAGCTCTTCAAGCTGGTTCAGCAGCCAGAACGACTTCAGCACCATCTGCCTTTAATCCTGTAACAGCCAGACCCTCTGCTCTCACACTACCTATAACCACTAGCACCATCACAATGCCTGCACAAACACTCTCTGATGGGGTGGTCAGGCCCAAGATTCTCCCTCCTACTGGGGAGGACTTGTTTTCCTCAGAGGACCTTTTTGCTTCTGCCTCAGTtcctaaacacacacctctaccgCAAACCAAGACAAAGGCTCCTGAGACAGTGGTCCATGGAGCCTCCAAGAAAAAAGAGCCAGCCCTGCCTATCTTCAACGACAATAGTGAGGACCTCTTTGCCACAGTCAAGCCAAAGCCGGTGAAGAAAGCCAAGGCTATGCCTTTCcttgatgatgacgatgacatTTTTggaacagagaagaagaaggactCTAAGACACCTGTCAGCTCTGTTAAACCAGATTTTTTCCAGGATGATGAAGAAACACCCTCCAAAGTACTTAAAAACCTAAAGAACAGAGCTTGGAGGCAAGcctgtttgatgatgatgttgacaTTTTTGCTGATTTGACTCCTGTAACAAAGccaaaggagaaaaagaggaagaagaaagtgGAAACTAAATCAATATTTGATGATGACATGGACGATATTTTCTCATCTGGAATCACAAAACCAGTAGGGGCCTCATCCGCAAAGAAGTCTAAGAAGCCTGTCCAGGAAACCAACTCGGCAGAGGAATCAGGCCATAATATTTTTGATGACCCTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57364 lncRNA downstream 636893 18167020 ~ 18173182 (-) False G48476
TU57365 lncRNA downstream 636893 18170025 ~ 18173182 (-) True G48476
XR_004577851.1 lncRNA downstream 718462 18087504 ~ 18091613 (-) True LOC117596862
TU57290 lncRNA downstream 725270 18083657 ~ 18084805 (-) True G48419
TU57280 lncRNA downstream 763189 18037687 ~ 18046886 (-) True G48411
TU57866 lncRNA upstream 15431 18843753 ~ 18844635 (-) True G48938
TU57868 lncRNA upstream 25191 18853513 ~ 18853713 (-) True G48940
TU57878 lncRNA upstream 62241 18890563 ~ 18890812 (-) True G48947
TU57886 lncRNA upstream 99860 18928182 ~ 18929502 (-) True G48954
TU57908 lncRNA upstream 128835 18957157 ~ 18957459 (-) True G48970
XM_034303116.1 mRNA downstream 2478 18788701 ~ 18807597 (-) False zfand4
XM_034303109.1 mRNA downstream 2478 18788701 ~ 18807597 (-) False zfand4
XM_034303114.1 mRNA downstream 2488 18788701 ~ 18807587 (-) False zfand4
XM_034303112.1 mRNA downstream 2548 18788701 ~ 18807527 (-) False zfand4
XM_034303110.1 mRNA downstream 2560 18788701 ~ 18807515 (-) False zfand4
XM_026945920.2 mRNA upstream 3229 18831551 ~ 18837797 (-) True alox5a
XM_026932472.2 mRNA upstream 16830 18845152 ~ 18852107 (-) True slc25a16
XM_026937044.2 mRNA upstream 69841 18898163 ~ 18903520 (-) True si:dkey-228d14.5
XM_034302735.1 mRNA upstream 69841 18898163 ~ 18903003 (-) False si:dkey-228d14.5
XM_026932754.2 mRNA upstream 183659 19011981 ~ 19018909 (-) True mat1a
TU57664 other downstream 196674 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1148691 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1235653 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1235653 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1334014 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 488165 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 807516 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1529612 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1529666 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1529666 20357988 ~ 20369429 (-) False gng2

Expression Profile