RNA id: XM_026940120.2


Basic Information

Item Value
RNA id XM_026940120.2
length 6517
RNA type mRNA
GC content 0.46
exon number 28
gene id ninl
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17822585 ~ 17843789 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcaataactaactaactaactaactaacggCGAGAGAGCCtcactacagtgtgtgtgtgtgtctgtaccgGTCACTCAGACACCGTCCTGTTCACTTTTCTGTGGATTAAATGGGGAGTGTGTCACTTTAGTTGTTTATGCCTGGCGGTGATGCGATGGGATAAAGCAGAGAGGATTTTCTCTAAAGTAACGGCGCGGGACAGTAAAGGCGGTTAAGCGGGTTGTGCAGTATGTGGTGGAATGGATGAGAATGAGCAGAACCGTTATGTGACTCAGCTGAAAGAGGAGTTTGACAGCTGTGACACTACGGGTACTGGTTTCCTGGATAAAGAAGAGCTCACTGCACTGTGCCACAAGCTGCGTTTGGATGCTCATCTCCCGCTACTGCTGGACATACTGCTCGGAGCACAGCATTATGCAAGGGTGAATTTTGAAGAGTTCAAGGAGGGATTTGTAGCTGTGCTCTCCAGATCATTAGACTTTTCTACATCTGAAGAGGAAAGCAGCTACCTTGAGCCAGTCCCAGAGGAGGTGAGCCCAAAGTTTGTGAAGGGGACCAAACGCTATGGACGCAGGTCACGACCTGATAAAACCACCTCAGTGCTAACGGACGAGACGGAGAAGGATGAGACCCCCTCTACAGGTGTGAGGAGGGCCAAGCTCAGACGCTCTACCTCACTAGAGAGTGTAGAGAGTTTGAAGTCTGATGAAGACACAGGGAGCAACAAGGAAACAAGCAGGGAACAACAAAGTGCCATTCAACACTCACTTCTTTTTGAAGCACAAGgCCAGTTAAAGCTCTGGAAGCCAGACAGCTCAGGAAGTCGGAAGCACTTCACTGGTCTATGCCAGGAACTAACAGATGGGCAGGTGAGAGCGGTTTGGAAGGAGCTGGGGGTTGGCGCTGGAGGCTCGCTGAACAAGCAGGAGCTGTTGCTAGTATGCGACCACATCGGCCTCAAGGATCTACAATCTGAGGAGTTAGACAGTCTCTTCAGGAAACTGGATAAAGACCAGGATGGGAGAGTGAGCCTTACTGAGTTCCAGAGTGGTTTGTTTATACATGGAGATTTGCCTGAACCCAAAGCTGCATCCACCCCTGCCCGCCTCATTGCCCAGTGCTCTTTTTCACAGGACTTTGAGGAGCGAGTTCTGCGCTCCACCTCACCCTCGGTGCTCTCCGCTACAGTGGGTCAGAGACTGCTCACTCGGCTGGATGATGGCTCAGGCTGCACCAGTCCCGAGAACGTCATCACCTTTTGGAATGAGGAAGGAATTCGTAACAGCAGAGATATCCTTCAGACTTTGGATTTCTCTTTGGAAGAGCAGCTGAGCCTGGCTGATCTCACACTTGCCCTGGACAATGAGCTGCTGGTCAGCGGCAATGGCATCCACCAGGCTGCCCTCATCTCCTACAAGGATGAGATCCAGTTCCTTCAAGAGCTGGCAAATCAGGCTTGTCAGGAGAGGGACAAAGCCAAGGCCCAATTAGAACTGGCCGACCGTCGTAACCTCCAGCTGGTCAGAGAGATTGATGACCGCCATGCCACCATAGAGTCACTTAATGAGTCTAAGATCAAGGATCTGGAGCAGGAGTTCCGGGAAAAGCTAAGTGCCTTGAGAAgtgagacagagcaagagagcgAGGTGCTGCTTCAGCAgatggagaaggagagagacaagtTGAGGGAGGAAGTAAAATTCCTCAAAGGTCAAGAAGCCAATTTGCAGGAAGAAGCCGCTGCTGCCATTAAGGAGAACAGTCGTCTAGAGGAGGAGATCTGTGCTCTGAAAGGGAAGCTGTCTGAAGCAGAAAGCACCGTCTCTAAACTAAAGAAGGATCTAGACCATGTGCTGCAGGACAAGTATGGTGGTTTAGATCCAAACAGTGCAGGACTGATAAGTCGAGAGGAGCATCTCTCAGGGATTATAAAGGAGTATGAACTGCAGTGCAGGGAGTTGCAGGACAGGAATGACGAGTTGAGCTCTGAGCTGGAAGTTCTGAAAAATCAAGGTTCAGGAAGGAAAACCAGACAATCAAGGGACAGACTTTCCACTCTCACCTGGTCTGGCCGCAGAGCACTAACCACCGAGTCTGATTCTGATGACCCTGAAATAAAAAGAGGCTCTTCTCCCAAAATTAAGAAATGTATTAACAAGAATGCTTTGCAAAGTCTAGCCCCCACTGTGAGCATTGAGACAGAGCTAGCAATGGAGCAACTCAAGGAAAGATACGAACAAGAGATCCAAGATCTGAAGATCCAGTTGGAGACCAAAGTAAACTTCTATGAACGCACCATAGAGCTGATGAAGCAGAACATGGAGGTTGAGCGTAAGGAGATTGCCCAGGGCTTCAAGATGGAAATTAGTGAACTAGAAGAGCAGAAGGCTCTGGCAGAGGAGCGGCTTGAGCAGCTACGTCAGAGGGTGGAAAGATTGGAAGGAGAACTAAAGATTAAGAGTGAAGTGATAGCATGGGGACCTGAACAGGAGCGACGAGTTCAACGGGAGCAGGCAGAACTGGAGCAGAACTATGCCCGTGAGATTGGTAACATTGTGCATCGCCTCACCTCAGAGAAGGACCAACTGGAGGCAGAGCTTAAGCTGAAAATGGACCAGGAAATACTCCTTGTTAGGGAGGAGCTGGAGCAACAATTATCACAAATCAAGGCTCAGCTACATGGTGAGCAATTTCGGCTGCAGGAACAGACCGAACAACACTGCAGGGAAATGGGTGCATGGGAGGCTAGAGTGGAGGAGCTTGAGCAGGAGGTGCGCAAGGAGCGCCTTCACAGTGCTGAGCGCTTAGGAGAGGAGCAGGCACAGATCTGCAGCAGTGCTGCTCAGGAAAGGAAGATACTGGAGGAAAAGCACCAGGACGAGGTTCGGCAGCTGAGGGAGTGTATTTGCAAGATGCAAGATCAGGCTGAGCTACAATGTAGAGCAGAGGAGGAATCGCTCATGCTGCAGAGGCAGTTGGAGGAGAAGCTGGAGGAAATGTGTGTTCAACTGGAAGACAACACAATGTCCATGAAAGCCCAGGATGCCCTCATCCAGAGTCTGACCTCAGAATTGCATGCcaaagagagggagatggacattaagaaggagagagagcaaaagCTTCTTGGTAAGGTGTCTCAGCTAGAGCGCAAACTTAATTTTGAACGTGAAAGGAAGATTTCTCAACAAAAGgtggagaaaaacaaagaggaagCACTTCTTGGCAAGGTGTCTCAGCTCGAACAGAGACTTGTGgaggacaaaaagagagaagaagagctTCTTGATAAACTTTTTCAGTTTGGAGAGGAATGGGACCGCATGAAAATTGAATTGGAGATGgtgcaaaaagaaaaggaaagaatgcAGGGAAACTGCAGTCAACTGTCATCTGCACTTGTCCAGCAACAAACATTGCTTGAGGAGCAAGAGAAGGAACTTGATGAACTTAGAGAAAACTTGGAGAAAACCCATGAGGCGTTGAAAAGCAGAGATGAAGATTTGACAAGACAGGCTTCTGAGCTAAAATCTGTggagatggacagagacagacttATGGAGGAACTGAGGAGTCAAGGCAATATCGTGAAGGACCTTCAGGCAAAGTTTCAGAATCTCTCTGAGGACTGGGATCAGTTGAATGATATTGTACAAAACCTACAGAATGCTCTAAGCCAGGAACAAGGCACAGCTACTCAGCTCCAAACCCTACTAAACTTGGAACGAGAAGAGAAGAGCCACTTTCTGCAAGAGAACTCCAGTTACAGAACTCTCTCAGACCAACTCTCGTCCCAGATTGTGGAAATGGAAACTGAATCAACCAAGCTTACAGAAGAGCTCAAGGAACTGAGAGTAGATTTACAGCACAAGGACAAGCAATTACTAGAACTCAGGACTCAGCTGGATGCTAAATCCAAAGAGATAGACTTACTCTGGAATGAGGTACACCAGAAGATGGAGATGTTTCAAAACATCAACCGTCTCTCTGATGAGGTGCAACTTTTGACCCAGTGTTTGGAGGACAAGGAAAAGGAGCTTTGCTCCCTGAGAGAAGAGGCAGACAACTCCACTAATCAGCTGCAGCAGTCTTTGATGATCTCCCAGGCAGAGGTTCAGCAGGTGGAGGAAGCATTTGAGAGGGAGAAGGGCCAAATGAAGGGGCAGTTACTAGAGATGGAGAGACTGGTCATTGCTCTGGAAACGGTGATGGACCCATCAAGTCCACACAGGGCCAAACTTGATGAGGTTAATTCTGAAAACAGTGCACTGAAGGACAGGTTGGCTGTTTTACATCAGGATGTTATGAGGTTGGAGGAGGAGGTCAGCAAAAAGAGGAGGAAACTCGAggagatggaaagagagcaTATAAAAATtcaggaagaagaggagaggtTACACAAAGAGAACTCTAAGGTTCGAGAAGAGGCGTTGGAGTTAAGTGCTCGAAACTTGCAGCTTAGCAACGAGAACGCTGAGTTAAATTCTCGACTCCAGTCTGACCAAGGCACAGTGCAGATGTTGACTGAAAGGCTTTCCCAGGTGTGTCAAGAACAAGAAGAGATGACAACCTTCATTAAACAGCTCCAAGAGACAAATGGAAGTCTAGAGAAAGAGAAGCTACAGCTACAAGCTAGCAGGCAGGATGAAAAGAACCTCCTAGTGAGAGAGCTAAACGAAGCCAGAGACAAGCTTCACCACTTAACAGAAGTTGAGTCTGTCCTGACGAGCTTAACCCTGAAAAACCAATCGCTTCAGCAGGACAAGGAGAGCTTGATgaaagaagcagaagaacaaaacaaaaagCTTGAAAAACTTCAGGAGTGTATTAACACTCTTGAAGACCAGTCAGCACAGCTTCATTCTCAGATTTATTCAATGTGCAAGGAAAAGGAGGTTCACATGAAGGAGATGTCCACACAACACATGCTGTTGAAGGAATCTCAAAACAAGGTTCTGGAGCTTGAAACCAGGATGCATGAATTTGTTAAGGAGAAGGAACACATGCAGCTCGTTCACAGGATGCAGGAAGAGACAGCAGCTAGTGCTCTAGAGGAAAAACTGAGGAGTGTGCAAGCACAGTGTCAAGAGCTTCTTGACAAGTTGAAAGATTCTGAGTCTAAGCTGCATGCTCAGGAGTTAGAACTTCAGAGGTTAAAGCATGAAAGCCTCACCTTAAGAAACAAACAGGCAGAACTGGAGACCACCAAGCAGAAGGCAGAAGAGCAGgCTTTGAGGGCAAACACTGCTCTATCGCTGAGCCAGGCACAGCATGTTCGTGAGGTGCAGCAGTTACAGGAACAGATTGGCCTCAATACCCAGGAGTGGCTTTCTAACCTACAAACTAAACTGGCTGAGGAGCAGAGTAAAACACAGCAGCTGGAGGTGCAGCTCCACTCTCAGGCCCAGCAGGCCAGGACTCAAGTGAACCTTCAACAGGAGCAGTATGAGAAAGTGATGGAGAACATGCAGGAGCGGATGGATGACGTGGAAGCCAAGCTAAAGGCGGTACGACTGATGCTGCAGGAGAAGGTTAACCAGCTGAAGGAGCAGCTGTCTAAGAATGTTAAGTCAGATTTGCTGCTAAAGGATCTCTACGTAGAGAATGCTGAGCTCATGAAGGCTCTGCAGATAACTGAGCAGCGGCAGAAAAGTGCAGAGAAGAAGTCATTCCTTTTGGAGGAGAAGGTGTCCGCTCTCAACAAACTCCTGCGTAAAATTGCTCCTGCCTCTCTTTCTGCCTAGAATGCTTCAGCCACAAATGTCCTTTAACAGTAATGAAATGTGAACTacctaagtttttttttttttatagacttAAACTCCTCTATTGTCTATAAAGGGAAACATGTTCACAGTAAGACAGTGAAACCCCTCAGTGTGACACTTTAAAGCACAATCATTGGTGATTCAAGCACCGGACTTAAAACTAACACCACAAGCATAATATTGACAggatattttgctaaaaatggTGTTATACTAGTTTGTTTGTAATGTGACAATTTTGTTAAAGGCCATAGCAATTTTATTATGTCTCTTCTGAGACAATCATGTCTGAGTAAAATATTAAGCGGACGTTTGAAATGTAAAGGGCCAAATATAATGGCATCTTGCAAATGGGAAATTCCTTTTGTTTATTCGTTggtaatttaaacatttatggactGTATATGgtaaatattcattataaatacagaaaaatgtttgaaagGTGTTTGACTATTTAGACGTATCAACTCAAAGCACAGTATTCTTCACATGTACAATTTTGATACACAGGCTGTCTTCAAACTGGCACAATCATGATGCACTACTGTACAATCCACTGTGATGTTCATAAATTGTGTTGACAgctgtaattttattaattcttcTAAAATGTAATTGTATGACCTtcactgcatttatttaaaaaagaaaaatggaccTGCTTAAGACATGGCAGCAGTGTGATTGAGATATCATACACATGAATCACTGTGTACATTTTGACAGTAAATTTTACAtcaaaaca

Function

GO: NA

KEGG:

id description
K16477 NINL, NLP; ninein-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57104 lncRNA downstream 3981 17817285 ~ 17818604 (-) True G48271
XR_004577884.1 lncRNA downstream 20699 17799740 ~ 17801886 (-) True LOC117596895
TU57083 lncRNA downstream 56920 17762794 ~ 17765665 (-) True G48254
TU57076 lncRNA downstream 95377 17716235 ~ 17727208 (-) True G48250
TU57070 lncRNA downstream 112209 17708921 ~ 17710376 (-) True G48248
TU57216 lncRNA upstream 143633 17987422 ~ 17987631 (-) True G48368
TU57280 lncRNA upstream 193898 18037687 ~ 18046886 (-) True G48411
TU57290 lncRNA upstream 239868 18083657 ~ 18084805 (-) True G48419
XR_004577851.1 lncRNA upstream 243715 18087504 ~ 18091613 (-) True LOC117596862
TU57364 lncRNA upstream 323231 18167020 ~ 18173182 (-) False G48476
XM_034302626.1 mRNA downstream 42057 17719023 ~ 17780528 (-) True gbf1
XM_026933626.2 mRNA downstream 42058 17719023 ~ 17780527 (-) False gbf1
XM_026933619.2 mRNA downstream 42058 17719023 ~ 17780527 (-) False gbf1
XM_026933610.2 mRNA downstream 42058 17719023 ~ 17780527 (-) False gbf1
XM_026933595.2 mRNA downstream 42058 17719023 ~ 17780527 (-) False gbf1
XM_034302564.1 mRNA upstream 52824 17896613 ~ 17902319 (-) True si:dkey-45k15.1
XM_034302847.1 mRNA upstream 83098 17926887 ~ 17933918 (-) False si:dkey-196h17.9
XM_034302846.1 mRNA upstream 83098 17926887 ~ 17932229 (-) False si:dkey-196h17.9
XM_034302845.1 mRNA upstream 83098 17926887 ~ 17932229 (-) False si:dkey-196h17.9
XM_026938413.2 mRNA upstream 83098 17926887 ~ 17932229 (-) True si:dkey-196h17.9
TU56951 other downstream 161201 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 248163 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 248163 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 346524 17471187 ~ 17476061 (-) True cisd1
XR_004577772.1 other downstream 839856 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 486579 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1472698 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1792049 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2514145 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2514199 20357988 ~ 20369097 (-) False gng2

Expression Profile