RNA id: XR_003404319.2


Basic Information

Item Value
RNA id XR_003404319.2
length 4894
RNA type misc_RNA
GC content 0.55
exon number 15
gene id znf827
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5263582 ~ 5357860 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCGCCCGGCCGCTCGCCCGCGCCCGCTCGCTCTCGCTCTGCTGTTGCTGCCCTTTGATCCCTGCATTAGTGTTAGTTAGGGGctcgagacacacacacacacacacacactcagagagagagagagagagagagggagagagagaggagaggagagcgGCCATAGCCAAGACACGGCGACTACAACAACAGCACCTCCTCCTGCTGTAccgctcccacacacacacacacacacacacacacacacacacacactctcggaGCGAAGCGAAGACGGCCAGGTGCACGCGGCGAGTCCCCCCGCCATCGAGCTCGCTCCCGCGCCACATTTCCATGGCGAAGGACCTTTTCGCTTCTCGCGCCTGAGACCAagcaggaggagaagaagaagaagaacaagaagaagaagaatgtgaaAGACGAAGAAGACcaaaaagaacaagaagaagaagaaggttcttttttttttttattttttttttttaaaaaatgcccaGGAGGAAACAGGAGCAACCGAAGCGCCTTCCTTCGCATGCAGAGCCAGCTGAGGATGGGGCGCTAGCGGGCAGCTCGGTGGTGGAGGACGGCTGGTTTGGGAACAATTCCGACAGTCCTTCCACGTCGTCCTACGGCGATGTGCAGGACGACCTGCGGGTGTCTCCGGAGGACGGGGCACGGCCGGACCGCGCCACCTTGGCCGGGAGCCCTCCAGGCTGCGCCACGCCTGCTCAGCGGGTGTCGCTGGAGCTGCTGGGGCTTGACGCGCGCACCTTGTCCACGCAGGACATGTCCCTGGTGTCCTCTGTGTCGTTGTCATCCATGGTGTCATCGTTGTATGGCGATTCGGCTCACGGCCTCTCCAAACCACTTAGCAGCAATCTACGCAGACTCCTGGAGTCCGGCTCGGTGAAGCTGGAATCAGGAGAGCTCATTGGGCGAGGTCTGGGCCGAGGGACGGAGTCTCCGCCTGCAGGCCTGGCTCTGTCTCCGTCCTCTCATCACGCCCAGCAGCTAAGCGCCCTTGCACGCAGACTTGCCAACAGCAGTAACAATGGAGTTAGCTCTGCCTCCACCTCGCCCGCGTCGGTGCCTGTGGTGAAGCAAGAGCCTGGAGACCCGTTCGGACCGGCTGAGCCTGCCAGCTCGGGCAGCACTAGCTTTGTTTGGGTTGGAATGGCGGAAAAATGGCCGCCGGCTGGAAGCCTGTCTCCCGATTCGGCCATTCAGAAACTGAAAGCCGCAGCCAATGCTGTTCTCCAGGACAAGAACTCCACctcttcatcttcttcctcgtcctcctcttcagtcacctcctcctcttcttcgtcctcctcttcatcctcagTGCCGCCACTCGGAGGGCGCTCGGATGACTCTGTGCGCTTCGACTCCTTCGCGTCGCCCTTCAGCTCGCAGTCTGCCAGCTCCACGCTCGCCGCACTCTCCAAGAAAGTGTCAGAGCgaagccagcagcagcagcagccctCGGCcgccccctttctctctctcgtctccATGACCTCATCAGCAGCGCTGCTAAAAGAAGTGGCGGCTCGGGCCGCCGGCAACATGCTGGCCGATAAAAAAGACCCGCAGCTGGCGACGGCCAACACTGAGGACTCTAAACCGCAGTTAGACAGGAACCACAAGGCCCCGACGCCCAACCAGAGCATGGAGCTTCTGCTGCCCGCTGCCCCCAAGGGACGTGCCAAGCCCAGCAGCCAAGCAGGTTCACCGGAGGACAGCGGGAAGCCCTTCCAGTGCCCCGTGTGCGGCCTGGTCATCAAACGCAAGAGCTACTGGAAGAGACACATGGTGATTCACACGGGTTTGAAAAGCCACCAGTGTCCTCTGTGTCCCTTCCGCTGCGCTCGCAAAGACAATCTCAAGTCGCACATGAAGGTGCACCAGCACCAGGACCGGGGCGAGACGTTCCAGTGTGAGCTGTGTCCCTTCACCTCATCGCGCCACTTCAGCTTGAAGCTGCACATGCGCTGCCACCAGCACTTCCCTCGGACCGAGCTCAAGGTCAAAGAGGAGCCGTGCACAGACGCCGAGGAAGCCGAGGCAGAGCAGGCGTCAGGCACGGGCACCTCGCCGTCTCCCGCTCTGTGCCACACCCCGGGCGAACCCTCTTCCAATCACGCACACATCAAAGAGGAGCCTCAGGACGTTGCGCTGACGCCGCCTTTCCCGCCGGTCAGAGAGCGACcggccagcagcagcagctcactGGATCTGCCCAGGATGAGCGCCAGTCCACCCGGTCCAGGCACGGGCACCCCGGCCGCCTCACTCTTCAGCCCCGACATCAGCACCAAGACGGCCACCGACCTCCTTATGAAGCTCTCCGCGGCAAACCAGAAGGAGGCGCTGAAGAGTGGCTTCTGCGTGAAGGAGGAGCCCGAGGCGGAGGAGGCGTTGAGTCCAGCGAGATGTCCATCGTTCAGTCTGGGCCACGAGGCGCCCGCGGTTCCAGGGAGGCCGCGCCAAGAGGGCAGCATCCTCAGCCACGACATCAACGTCAAGGTGGCGTCTGAGCTGCTCATGAAACTCTCAGAGAACAGCAAAGACACCTGCCTCCAGAAAGTGACGGTAAAGGCGGAGCCCATGGAGGTGGACCCACCCTCAGAAGTGGCTCCGCCCCCTTCTCACCTGCTAGGCTTCAGCACTTTAGGGGCATGCGAGAAGAAGGAGCCAATAGCTGGCCTTCCCGAGCCTCTGCCCCGCCCCAACAAAGACCTCTTCTCCCAGGACATATCGGTCAAAATGGCCTCCGAGCTGCTCTTCAAACTGTCTGAAAAAGTAAGCAAAGctaatgaaaataaagacagcACATCGTTTGGCATGACCAGCCCTTTTCTGGACGACCGCTTTAGACAATCGCCCTTCAGCACGCGCTCCAAGAGCTCTTCCCCAGCCGAGGCCAGCTCCTCCGCCCGAGCCTCCCAGCAGCAAGATTCAGAGAAACCACTGTGCGAGACGGGCAACGGCCTGCCACAGTGGAGACTCAACGAGCAGCTCTTCCCCTGTCCGGTGTGTGGTAAAGTGTTCGGCCGCCAGCAAACTCTCTCCAGACACCTTTCCTTACACACAGAGGAGAGGAAGTATAAGTGTCACCTGTGCCCATATGCGGCAAAGTGTCGTGCCAACCTGAACCAGCACCTCACCATCCATTCGGTCAAACTGGTAAGCACGGATGCCGAGCACCTCGTTAACTCAGTCACCAGCGAAGGAGGAGAACGCAAAAACTGCCCCTACtactacagctGTCGAGTGTGCGGTTTCCAGACAGAGCTGAATGCACAGTTTGTGAGCCACATGTCACTGCACGTGGATAAGGAGCAGTGGATGTTCTCGCTGTGCTGTAACTCCTGTGAGTACGTGGGAGTGGACGAGGCCGAGATGAAGGCTCATATCAACGCTGAACACACAGGCCTGAATTCCAGGAGTCCCCTGAGTGAGAGTAAGAGCACATCGTCATCTCTCTCGGCCCTCAGCGATTCCCTGAACAGCTCTGAGAGCGGGGACATTACCCAGGGAAGCGAGGAGCTCAAAAGTCTGTTGGCCCCGTCCTCATCTGCCAGTAGCCAGTCGAGCTTGGCGTCGGGAACAGAGGAGAAATCAGAAAAAGGCTTTGAATGTGTGTTCTGCAACTTTGTGTGTAAGACGCGGGCCATGTACGAGCGGCACCTGCAGATCCACCTGATCGCACGTATGTTTGAGTGCGATGTCTGCCACAAGTTCATGAAGACGCCCGAGCAACTCCTCGAGCACAAGAAGTGCCATACGGTCCCCGCTGGAGGGCTCAAACTTGTGTGGAGGGCGCCTTGatgttcatgatgctgtttgtttaggtatgttctccaACAGATTCTGGAGATCACATGACACAGTAATTGCACAAATTCAATTAATTGTGATTACTCATCACTTATTCAAGTCAAATGAATAtatgagagagagcaagagagagtcTTCCACAAATATTGTGGGCTCTTTTGTGTATATTCATGAGGTATAATACCAATTAAGTCAATTTAATTTCCAGGGTGTAACACTACAGAATGTTCAGTGGGGTCAATACTTATGCAGTCCACCATATACTCAGTGATGTCACTCAGGCTTACCTATGTGGTTTATGATAAAAGTATGACTTACTGCAATCTATAAACAGGAAACTTTGAGCAGCCATCTTGGATAACCAGAATCACCTGTTCCCCTTAGCTCAATTTGATATAACCACCGCCTAGAAACTGCCTCCCAAAGTTTGAAAgcgaattattatttttcagttatttaaaatattaatgtgagCAAGTGTAAGAATATTTAACAATGTATTTAtagacttttttcccccattttttccATTACctttctattatttatattattttgtagcTGCATTATCGTCATAGCttcaatgcaaaaataataagcaaACTGTATACAcgaaacatgtcttggctgaggTATGCCATTTGGGGTAAGAGGtaaattgtgcattttttttttaaccaaacattTAAGATTTGGCACTAGGATCAATTAAAGACTAATAATTATGAGGCTCATTCAAAATGTGTCCATGAATTGAGAATGTTTGCTGAGCGTGAGTTGGGTGTGTTGCGCCTGCTCTGCTGTTGTGAGATTGATGATGAGAGAACGAGGTAGTGTTGAGGTTCAGTGTTGAGGTTCAGTGTTGAGGCAGAGAAGCGCTCTTCTTGGTGTGCTTTCTGAGGTCATTCTGTTCTGCAGGGTTTGTGAAGCGCTTTGGGGCCCTGAGCAGATGAAAGgtgctatttaaatGTGCCCTCTGTGCATGTACTCCACCAGCAGGGCGGCGGCCATGGAGTGCCACCTGAAGACGCACTACAAGACGGAGCACC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48526 lncRNA upstream 37154 5224948 ~ 5226428 (+) True G41019
XR_004577893.1 lncRNA upstream 40807 5219493 ~ 5222775 (+) True LOC117596903
TU48521 lncRNA upstream 133196 5130120 ~ 5130386 (+) True G41015
TU48512 lncRNA upstream 183721 5079299 ~ 5079861 (+) True G41006
TU48405 lncRNA upstream 360963 4899491 ~ 4902619 (+) True G40908
TU48780 lncRNA downstream 461851 5818548 ~ 5819447 (+) True G41232
TU48872 lncRNA downstream 519451 5876148 ~ 5876422 (+) True G41299
TU48876 lncRNA downstream 860768 6217465 ~ 6228351 (+) False inpp4b
XR_004577767.1 lncRNA downstream 882670 6239367 ~ 6262431 (+) True LOC117596795
TU48917 lncRNA downstream 903908 6260605 ~ 6263303 (+) True G41331
XM_034302684.1 mRNA upstream 371203 4882996 ~ 4892379 (+) True prmt9
XM_034302686.1 mRNA upstream 371203 4882996 ~ 4892379 (+) False prmt9
XM_034302685.1 mRNA upstream 371203 4882996 ~ 4892379 (+) False prmt9
XM_034302676.1 mRNA upstream 491978 4664316 ~ 4771604 (+) True nr3c2
XM_026934517.2 mRNA upstream 491978 4667052 ~ 4771604 (+) False nr3c2
XM_026937146.2 mRNA downstream 243188 5599885 ~ 5626477 (+) False si:dkey-27h10.2
XM_034302752.1 mRNA downstream 243188 5599885 ~ 5620916 (+) True si:dkey-27h10.2
XM_026937136.2 mRNA downstream 280170 5636867 ~ 5674128 (+) True frem3
XM_026942811.2 mRNA downstream 320483 5677180 ~ 5689962 (+) True LOC113544150
XM_026940088.2 mRNA downstream 340509 5697206 ~ 5716038 (+) True LOC113542501
TU47789 other upstream 1428971 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 3097798 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 3172276 2085465 ~ 2091306 (+) False stox2a
TU45995 other upstream 3172361 2085465 ~ 2091221 (+) False stox2a
TU45994 other upstream 3172741 2085465 ~ 2090841 (+) False stox2a
TU49753 other downstream 1847253 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 2292501 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 3109050 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 3112927 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 5195562 10552259 ~ 10558295 (+) True sprn

Expression Profile