RNA id: XM_026940583.2


Basic Information

Item Value
RNA id XM_026940583.2
length 2557
RNA type mRNA
GC content 0.42
exon number 21
gene id prom2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15059462 ~ 15078057 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGTTGCTGTGGGAATTGTGGAGGCCGCATGTACCAAGAGCAGACCAAAAGCATCAAATGCAGAAGATGGAGTTTTTACTGGGCCACTTTTCTAATCACCTTCCTTATATTGCAGGGAATATTTGTATGTTCTTAAGCAATACCTACACCCACGAGAGTGTGAGCTCTGCACCACGTGAATTCAACAATACCTTAAAAAATCTACAAAGCTACATCACCACTATTCCCAAGCAAATAGACCAAGTGGTGAATGAGAGCTTTGTTGCTGTGGATAATGTCACATATAACATTAATGAAATTGGCCCTTTGCTTGGCAGAGAGATCCAGAAAGAAATAGAAGGCTTTATTATCCCGGCCCTGGACTCTGCTGCAGTGATGGTACAAGTTGTTCAAAACACCAGTTTGTTGCTGTACACATTGAATGCAACACAGAAGGAGCTGGATTTGCTACAGTCAAACCTGACTGGAGTGAAAGCTCGCATGAACAAGACACTGCACAGCCCAGACTGCGTGCAGTGTGTCTCCTTGCACTCTGAACTGGACAAGCTGTCCCTGGACACAAGCATTAATATATCCAGCCTTAATAAACTCCAGGCAGCTGTGGACCAGGCTGAGAAGACTGATCTGAATATGCAGATACAGAAAGGGAAAGCCTTCTTTGAAAGCATTCCTGACAGGGTGACTACTGCAACCAGAGACAGCGTGCAGAAGGTTCAACAGGACCTTCAAACCATAAAGAGCCAGGTCTCACAGGTAACCAGAGATATTCCACTTGACCAATTGACTGAATTCTCCAACACACTGAGTACTATACAACAAGATACCAAGCTGTACACACCCACGATAGACCAGGCAGAGAAACTCAGGTGGATTATTGCAGTGATCCTGTGCTGTCTCATTCTTCTGGTGGTGGTGTGCAATCTGCTGGGATTGATGCTTGGCCCAGCAGGACTGGTACCTAAAGATGATCCAACTGATCGCTCTAGCACAGCAAACTGTGGTGGATTGTTCCTCATGGCGGGTGTAGGCTTCAGCTTTTTATTCTCTTGGATATTCATGATAGTCGTCTTGATACTTTTCTTGATAGGGGGTAACACGTATACCCTCATCTGTGTGCCATGGAAGACCCAGCAACTCTTTCAGCTCATTGACACTCCAGATGTGATTCCAGGATTCCAGCTGTCTCAAAGCCTAGGACTAAAGATTAACCTCACTATCACTGATGTGTATaaTGACTGCCAGATGAACAAGTCTCTATGGAACACCTTACACCTGGAGGACATTATTAATCTCAATAACTATCTTAATGTCTCCAAATACACAGGACAGGTGCAGGAGGCGCTTGAGAACAGCAATATCACTTTACCCAGCATTGTTCTGCTCAATTCTGAGACAAAGAAGCAACTGATCAGCTTCTCTGCTACAGCCAGCAGCGTCAACATCAGTAGCTTAATGCAGAAGgttactACTCCATCAGGAACAAATCTTAGTTACATTGCAGACAGATTGGATGCTTTGGTTAATATCCAgACCAATGCTAGTATAAAAGCTGAACTACAGAATGAGGCAAAAGACCTGAGATTCATCCAGACTCAGCTTAATTCCACCATCAAGCATCAGTTGATGGAGTTAGACTCTGAAATTGAGCGTTTCAGTGACATAATGTCACACATCAATGGTACTGTGGAGAATGTTCTGGAGAAAGTCAGTTCTGCTCAGGATGTTTTgaacaacaacacaacagaaACAGTGAAATCAAAATTGACTGAATTTGTAGACTGTCAGATTGGAGTCTTTACAACGCTTGCTGAATGGGCCAACCAAACAattacTGAGCAGGTGGGACGCTGTGGGCCGGTTGCTGTTAGTGTCAACACTGTAGAAAATCTATTTTGCTCACAGCTTGTGGACTCTCTGAATGCCTTTTGGTTTAGTTTGGGCTGGTGCATTGTCTTCCTCATTCCTAGCATTATTTTCTCTGTTAAACTGGCCAAGTTTTACCGCCGGATGAAGTACAAGGATGAGTTTATGGATAACATAATGATGAGCCCGATCCCACGAGTCAATCTAAAACCATACtgaaaggaggaagaaaaattacagtactgtatattcattgTTGCCATAATAAAGGACCTTGGCACAGCCTGAGGAGACATACACTGGATGCTGGGTCTAAAAACTCAGAGCCTGGAATTCTTCTGCTTTTGGATAAAGGAGGAAAATTTAATGTGATTTGGAATGTGCACATTCCAGACATGCTTTAGAGATTTTACAATAAGTGAGATCTCCTGAGTCATGACTATGAATGCGTGCGATCTATCAGTCAGAGGCTTTTGAGTTATTTTGGATCACTGCTTtgtatttgcactttttttcaCAGTGATTATGTACAATATGTGTCTGGAATGCAtattgttgattttattttttattttttcataattaatgATAATTGGTAACGAGAATGAAAGCACTGCTTCATGCATTGCTGTAATTTCAATTGTTTATTTCAGATGTTCTGTCTTTAATAAACCATTACTACTGACATTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55220 lncRNA upstream 49940 15014123 ~ 15015181 (+) True G46713
TU55127 lncRNA upstream 53132 14965906 ~ 15011989 (+) False G46638
TU55130 lncRNA upstream 91233 14972590 ~ 14973888 (+) False borcs7
TU55126 lncRNA upstream 98006 14965906 ~ 14967115 (+) True G46638
TU54850 lncRNA upstream 438749 14624473 ~ 14626372 (+) False LOC113541837
TU55286 lncRNA downstream 1756 15079813 ~ 15084310 (+) True G46765
TU55287 lncRNA downstream 3596 15081653 ~ 15084310 (+) False G46765
TU55373 lncRNA downstream 340972 15419029 ~ 15419642 (+) True G46833
TU55393 lncRNA downstream 395144 15473201 ~ 15473870 (+) True G46849
TU55615 lncRNA downstream 633080 15711137 ~ 15715524 (+) True G47043
XM_026941626.2 mRNA upstream 6342 15034066 ~ 15058779 (+) False ldb1a
XM_026942083.2 mRNA downstream 7139 15085196 ~ 15090877 (+) False nsmce4a
XM_026942091.2 mRNA downstream 7147 15085204 ~ 15090877 (+) False nsmce4a
XM_034302969.1 mRNA downstream 7255 15085312 ~ 15090877 (+) False nsmce4a
XM_026942098.2 mRNA downstream 7299 15085356 ~ 15090877 (+) True nsmce4a
XM_026940316.2 mRNA downstream 13773 15091830 ~ 15156743 (+) True tacc2
XR_004577898.1 other upstream 697675 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 781953 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 1564075 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2031873 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 2065159 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 715371 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 992657 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 992702 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 1156478 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 4263293 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile