RNA id: XM_026940628.2


Basic Information

Item Value
RNA id XM_026940628.2
length 3785
RNA type mRNA
GC content 0.42
exon number 22
gene id chuk
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13295232 ~ 13310269 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTACACTACGCATGCGCACTACACTTGTTTCGATTTCGACTCGAGTACGTTAGCTAGGTAGCTTATCTGCGGTGTGGTTGTCAGCAGCGACTAGTAGAGTATTCTTTGTTTTCCGTAATAATTTATGTATAGTTTGTGACTAATCTTCATCTTAAAGGGCTGTTCTTTTGCAAATGGTGTCATGGGAAGCTCGTTAGCTAGGTTGCTAGTTGTAGTTAGCATCATTGCTAATTGACTGGCTGCGGGGCGTAACATCAAGTTGTTTACGTTTAGCTTATCTAAGCCAGCTAGTTGTTTCTCAAGGTATCCTTATATCCTTATATCCCGCTGTATAATCAAAATGAAATGGATATCGTAGTTATTTTCTATGAAACAACACCTTCAATTCATAAGTTCTTCAAATTTCGACATTACATTCGGCTAGTTCCATCAAGCTAGCAACATAGACTGGTAACTCCGCTTAGCAAGGATGGAGAAACCTCCTTTCAAACAGACTCAGTTCTGTGGAGCTTGGGTAATGAAAGAGAGATTGGGAACCGGTGGCTTTGGTCATGTCTATCTGTATCAGCATCAGGAAACATCTGAGAAAATTGCTGTGAAGCTCTGTCGGCTTGAACTCAACGCGAGGAACAAAGACAGATGGAGTCGAGAGATCCAGATAATGaaaaaGTTGAACCATCTGAACGTGGTGACAGCAAGGGATGTACCTGAAGAGATGAAACACATTGCCTTGAATGACTTGCCTCTTTTAGCCATGGAGTACTGTTCCAGGGGAGACCTTCGTAAGTTATTAAGCAAACCTGAGAATTGCTGTGGACTAAAAGAAAGCGAGGTGCTATCCTTACTCAACGATGTCGGTTCAGGAATTCAGTATCTTCATGCAAACAAAATCATTCACCGAGACTTAAAACCAGAGAATATTGTACTTCAGGAAATCAACGGAAAGctGGTCCACAAGATAATAGACCTGGGCTATGCAAAAGATCTGGATCAAGGGAGCCTTTGCACATCATTTGTGGGCACACTGCAGTATCTGGCCCCAGAGTTATTTGAGAGCAAACCCTACACAGTCACTGTGGACTACTGGAGCTTTGGTACAATGATTTTCGAGTGTAGTTGCGGTTTTCGTCCATTTCTACATAACCTGCAGCCTGTGCAATGGACAAGCAAAGTACGTAACAAAGGCCCAAAGGACATCATGGCTGTAGAGGATATGAATGGAGAAGTCAGGTTTTCAACTCGCCTTCCTTACCCCAATAATCTCAGCAGCACGCTGTTGGAGCCCTTGGAGTGTTTGCTACAATTGATGCTGAAGTGGGATCCAGTTCAGAGGGGTGGAGTAATACAACCTGATACTAAACAGCCACAGTGCTTTGCACAACTTGATCAAATACTGAACATGAAGGTCGTGCACATCTTGAACATGACCACAACCAGGGTTCATTCTTTCCGTTTGAGCCCCGAGGAGACCCTTCACTCCCTGCAGCAGGGCATTGAGAATGCGACAAAAATTGAACAAGGGAATCAAGAGCTTCTGCAGGAGACAGGAGTCATGCTGGACCcgagaaagcctgcagcacaaTGTGTTCTGGATGGAGTCAGAGGATGGGACAGCTACATAGTGTATCTGTTTGATAAGAGCCTAACCAAGTACACTGGACCATTTACTGCCAGGCCTCTTCCAGAGAGCGTGAACTTCATCGtACGCGAGCCCAAGACCCAGCTTCCCTTAAATGCACTTAAGAAAGTTTGGGGTGAGGCAGTGAGCTACATCTGTGGCCTCAGGGAGGACTACAGCCGCCTTTTCCAGGGCCAGAGAGCTGCCATGTTGAGCCTTCTTCGGTACAACACCAACCTCACTAGATACAAGAATCTGATGTTTTCGTGTTCACAGCAGTTAAAGGCCAAGCTTGATTTCTTTAAGAGTAGTATCCAGTATGACCTGGAGAAGTACAGTGATCAGATGCAGTATGGAATATCTTCTGAAAAGATGCTAAAGGCTTGGCAATACAATGAAGAGAAAGCTGCTGCATTTGGACAGgttGCAGAGATTGGCCATCTAGATGAAGAGATTATGGCCTTGCACTCTGAGATTGTGGAGCTTCAGAGAAGTCCTTATGCTCGGCGCCAAGGAGATGTCATGGAGCAGCTgGAGGAGAAAGCCATTGAACTCTACAAACAACTGAAAGCAAAATGCAAAATGAATGACTCTCAGCATGGCTACAGTGACAGTTCTGAGATGGTGAAAGTAATTGTTCAAACTGTACAGAATCAAGACAAAGTATTGAAGGATCTCTATGCACATCTCAGTAAAATTCTGCAGAGCAAACAGAAGATTATTGAATTGTTCCCAAAGATTGAAAAAACTCTGGAGAACATTAAGGAAGCAGATGGCACTGTTATGCAGATGCAGAtgaagagacagagggagtTCTGGCACTTACTAAAGATTGCATGTGCACAGAACACCACCCGTAGCCACAGTGCAGATGTATCCCCTTCTCTCTCGGCCTGGCCTCAGCATCCTCAGCAGTCCTGCTCTCCACGCCTGCCCATGTCCCTGCCAGCTCCACATGACGGTGAAACGCTCAACCATCTACTGGAGGAGAATCAGAAGTACTTAAGCCAGCTCACAAGTCTGCTGCAGGAGACAACTGAGGAGAAATCAGAGAGTATAATGGATCAAGACTGGAGCTGGACTAAATATGAATCCCTGTTTGCAAAATTacaacatttataaattttattcctgttatgCTAATCTTCACCTGATTGGATTTCTGTTGGCACATATGGGTTTTCATCATAGTAAGCTGTCGAAATCATGTTTTATAGTGCTGTAGCAACATAatgacacatatatataaagatgtatttttaattGGCATAATGCCACCTTATACAAGCAAAGCTTAtacatacacttttaaaaagttGTTCTCAAACCAGGCCTCAGGGCATGCCAGACGGTCCAGATTTTTGCTCTATCACTCACACAACACaggaatagaataaaaaaaatgtttaaaaaaattgactgTTTTGGGGGCCATGAGTACtggtttgagaaccactgctttaaatacacaggtatttatttattattaatcaacGTATTCTACTCTGTATGGGCCGATTGTATGTGGATTAGGTGTCTTTCTATTGCTCAGCATCTGCACTTTAGAGGTTCACTGTGAATGTTGGATTTTTGCTGCCATGAAAGAACGGTGGACTATAAAATTAAGTCAGCGTGTAATAGAAGTGATATTTTTGAAAGGCAGAATTACTGAATGAAACAAGTCACAGAATCGAAACAAAAAACTGGCTGAATCTAGCCCTGGAAAGCTCTTTATAACATAAATCCTCCTCCTATCCATGAATTTAACAGTTGTCCATTACAACAAGCCCAGGACTGGCAAATTGTTGTGTGGCTGTGGATTAGGAAACCGAAGGTGCtgaagttatttttgtttttgttttcttttttggtaAATGAAAGAAGTGTCATAGTGTCATCAGTGCAATGCCTGTAGGAAGGCCTGTTAAGTGTCAGTTTGGGGATATAAGAACGTCACTATATTAATCTTGGTTCTCTGTTGTTCTTGAGAATGTAGGATCTTTTTGATAATCAGCTCTGCACAGAAGGTTGAAAAAACAGTTCATTATGTTATTTCATCAGATAATGTTTGACACATACTGATAAGTTGTTAAATTTTCTTAACTGAAATGTTCTTGAGTTCACTGGTTTATTGTACAttacaaataaaagtaattaaaatgtta

Function

GO:

id name namespace
GO:0001757 somite specification biological_process
GO:0007252 I-kappaB phosphorylation biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043124 negative regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007417 central nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0008384 IkappaB kinase activity molecular_function

KEGG:

id description
K04467 IKBKA, IKKA, CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53786 lncRNA upstream 200021 13095671 ~ 13095881 (+) True G45508
TU53744 lncRNA upstream 243373 13052240 ~ 13052529 (+) True G45473
TU53723 lncRNA upstream 264766 12960090 ~ 13031136 (+) True G45453
TU53729 lncRNA upstream 278302 13011946 ~ 13017600 (+) True G45459
TU53620 lncRNA upstream 425679 12870003 ~ 12870223 (+) True G45376
TU53888 lncRNA downstream 1408 13311677 ~ 13312080 (+) True G45592
TU53890 lncRNA downstream 2725 13312994 ~ 13313221 (+) True G45594
TU53962 lncRNA downstream 65530 13375799 ~ 13375999 (+) True G45640
TU54050 lncRNA downstream 211570 13521839 ~ 13599015 (+) True G45712
TU54051 lncRNA downstream 212637 13522906 ~ 13594825 (+) True G45713
XM_026944816.2 mRNA upstream 58923 13229662 ~ 13236979 (+) True ap3m1
XM_026943937.2 mRNA upstream 240527 13040207 ~ 13055375 (+) True dusp13a
XM_026941889.2 mRNA upstream 256565 13034660 ~ 13039337 (+) True zgc:153981
XM_026937865.2 mRNA upstream 261552 13032050 ~ 13034350 (+) False si:ch211-223p8.8
XM_034303028.1 mRNA downstream 4326 13314595 ~ 13317625 (+) True LOC113543512
XM_026944444.2 mRNA downstream 15624 13325893 ~ 13329493 (+) True calhm3
XM_034301642.1 mRNA downstream 19645 13329914 ~ 13333161 (+) True calhm1
XM_026942239.2 mRNA downstream 23072 13333341 ~ 13338334 (+) True LOC113543782
XM_034302547.1 mRNA downstream 23072 13333341 ~ 13338334 (+) False LOC113543782
TU53738 other upstream 262654 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 295940 12982406 ~ 12999962 (+) False col17a1b
XR_004577802.1 other upstream 359100 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other upstream 359100 12929559 ~ 12936802 (+) False spef1
trnat-ugu other upstream 628016 12667814 ~ 12667886 (+) True trnat-ugu
TU54033 other downstream 187823 13498092 ~ 13501046 (+) False pcbd1
XR_003404567.2 other downstream 903133 14213402 ~ 14283168 (+) False slc24a3
XR_004577898.1 other downstream 1051098 14361367 ~ 14367446 (+) False cgas
TU55629 other downstream 2483159 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 2760445 16070714 ~ 16073067 (+) True cxcl18a.1

Expression Profile