RNA id: XM_026940704.2


Basic Information

Item Value
RNA id XM_026940704.2
length 1445
RNA type mRNA
GC content 0.51
exon number 8
gene id ckba
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17965747 ~ 17971182 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCTCTTGCACACTATAAAATAAACGCTCTATCCCAAGCCCTCGCCGGAGAGCAGGATAACTTTGCAGCACAGTACACAGCTGGGACAAGTTGGGGACTTTTGTGTCAAACCCGTCTTCATCTAGTAGTAGTCCACAGGGAGCCTCCGCCATGCCTTTCGGAAACACCCACAACCAGCTGAAGCTGAAGTACTCGGCTGAAGAAGAGTATCCCGACCTGACCAAGCACAACAACCACATGGCCAAAGTGCTCACCCCTGCCATGTACGAGCGCCTGCGCAGCAAACAGACACCGAGTGGCTTCACGCTGGATGATGTGATTCAGACTGGAGTCGATAACCCAGGCCACCCCTTCATTATGACTGTGGGCTGTGTGGCCGGAGATGAGGAGACCTATGAGGTGTTTAAGGATCTGCTGGACCCCGTCATCGAGGACAGACATGGTGGATACAAACCCACTGATAAACACAAGACTGACCTGAACCCAGACAACCTCAAGggtgGGGATGATCTGGATCCCAACTACGTGTTGAGTTCTCGTGTGCGAACAGGCAGGAGCATCCGTGGCTTTTGCCTGCCACCACACTGCAGTCGTGGAGAGAGGAGAGCTATTGAAAAACTCTCTGTGGAAGCTTTAGGTGCCCTGAGTGGAGATCTGAAAGGGAAATACTATGCTCTGAAAAATATGACAGAAGCGGAACAGCAGCAGCTGATTGAtgaccacttcctgtttgacaAGCCTGTGTCTCCCCTGCTTTTGGCCTCTGGAATGGCCCGTGATTGGCCCGATGCCAGGGGAATATGGCACAATGACAACAAGACATTCCTTGTGTGGGTGAATGAGGAGGATCACTTGCGTGTCATTTCCATGCAGAAAGGTGGCAACATGAAGGAAGTGTTTAATCGTTTCTGCACAGGCCTCACCAAGATCGAGGAGCTGTTCAAGAGCAAGGGGCATGCGTTCATGTGGAATGAGCACCTGGGCTACGTCCTCACCTGCCCATCTAACCTGGGTACAGGGCTGCGTGGAGGTGTGCATGTCAAACTCCCCAATCTGAGCAAGCACAACAAGTTTGAGGAGGTGCTCAAGAGATTACGCCTGCAGAAGCGTGGAACAGGTGGTGTGGACACTGCTGCAGTGGGTGGTGTGTTTGATATCTCTAATGCTGACCGGCTGGGCTTCTCTGAGGTGGAGCTCGTTCAGATGGTGGTAGATGGAGTCAAGCTGCTTGTGGAGATGGAGAAGCGACTGGAGAAAGGCCAGGCCATTGATGACCTCATACCTGCTCAAAAGTAAATCCAGCAACCATCCTTCTACCTCGCTCATCCAAAATTCCCCTTTTCATCCCACCTCCACATCCCACTCCTAGGAGATCAATAAAAGAATGTATATTGTATTTAAGACACCTTTAATATGGTGACAAAATAAAAGTTCTGCCAGTTTA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004111 creatine kinase activity molecular_function

KEGG:

id description
K00933 E2.7.3.2; creatine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57104 lncRNA downstream 147143 17817285 ~ 17818604 (-) True G48271
XR_004577884.1 lncRNA downstream 163861 17799740 ~ 17801886 (-) True LOC117596895
TU57083 lncRNA downstream 200082 17762794 ~ 17765665 (-) True G48254
TU57076 lncRNA downstream 238539 17716235 ~ 17727208 (-) True G48250
TU57070 lncRNA downstream 255371 17708921 ~ 17710376 (-) True G48248
TU57216 lncRNA upstream 16240 17987422 ~ 17987631 (-) True G48368
TU57280 lncRNA upstream 66505 18037687 ~ 18046886 (-) True G48411
TU57290 lncRNA upstream 112475 18083657 ~ 18084805 (-) True G48419
XR_004577851.1 lncRNA upstream 116322 18087504 ~ 18091613 (-) True LOC117596862
TU57364 lncRNA upstream 195838 18167020 ~ 18173182 (-) False G48476
XM_034302847.1 mRNA downstream 31829 17926887 ~ 17933918 (-) False si:dkey-196h17.9
XM_034302846.1 mRNA downstream 33518 17926887 ~ 17932229 (-) False si:dkey-196h17.9
XM_034302845.1 mRNA downstream 33518 17926887 ~ 17932229 (-) False si:dkey-196h17.9
XM_026938413.2 mRNA downstream 33518 17926887 ~ 17932229 (-) True si:dkey-196h17.9
XM_034302564.1 mRNA downstream 63428 17896613 ~ 17902319 (-) True si:dkey-45k15.1
XM_026944048.2 mRNA upstream 30475 18001657 ~ 18010593 (-) False bag5
XM_026944039.2 mRNA upstream 30475 18001657 ~ 18009863 (-) True bag5
XM_034303123.1 mRNA upstream 76243 18047425 ~ 18054897 (-) False ttl
XM_026944510.2 mRNA upstream 76243 18047425 ~ 18054897 (-) True ttl
XM_026939061.2 mRNA upstream 92643 18063825 ~ 18081466 (-) False ikzf1
TU56951 other downstream 304363 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 391325 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 391325 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 489686 17471187 ~ 17476061 (-) True cisd1
XR_004577772.1 other downstream 983018 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 359186 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1345305 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1664656 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2386752 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2386806 20357988 ~ 20369097 (-) False gng2

Expression Profile