RNA id: XM_026940775.2


Basic Information

Item Value
RNA id XM_026940775.2
length 7306
RNA type mRNA
GC content 0.44
exon number 7
gene id pgbd5
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9097987 ~ 9129058 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagaggggagagagagagagagagagacgcgcCCTAAGCGGATGCTCTGCTACACGCTAGTTTAGGGTTGTCCACTCGCTGGCTCGCGCGCCTCAGAGCCGGTTTCAGCACTACAGTCAATGGGAACAGCTCTCATTTGCTTTGACTCAGTTTCGTGACTCAGCCCCGAGAGACGCGTCGAGATCCGCGCGTGCGTTAACGGGAGTGAGGCTGCGGGCAAGTCGGACCGCATGCTGGAGCTTCGGCTCGTCACGGACTCACTTGCGGACGCCGAAGCTCGCACAGCCGTGCGCCGGCTCTGACGCGTGATGGCGGAGTGCGGGCGGAGGGCGCTGTCGCTGCTCGAGGCGGCCCGCTCGCGCTACGAGAGCTTGCAGATTTCGGACGACGTGTTCGGCGAGTCGGGAGACGACAGCAGCGAGAACCCGTTTTACAGCACCACCGGAGACTCCAACTCGGACAGCTGTGCGGAGGCGAGCGAGAGAGCCAGCGGTGCAGGGGCCGGCGGCACGCGCGCTCCTCCCGGCTCGGCCTCTGCTGGACATGCGGAGCTgaaagagggagaagaggaggacGGATGGAACGATGCGCTGCAGGACACCGACACCCCCCACTATAAAGACACACACGGTCCCACACAGAAAATGCCGGCCACTGCCACAGCCATGGATTTCTTCCAGCTCTTCGTACCTGACAACGTTATTCAGAACATGGTGACTCAGACCAACATGTATGCTAAGAAGTACCAGGAACGCTTCGGCAGTGACGAAGGCTGGACCAGTGTGACGCCGGCTGAGATGAAAGCCTTCCTGGGCTTTGTGATCTCCACCAGCGTGCACCGCTGTGAATCCGTCCTGAGCATCTGGAGCAGCGGTTTCTTCAGCAACCGCAGCATAGCCCTCAAAATGAGCCAGGCACGCTTCGAGAAGATCCTTAAGTACTTCCATATCGTGGCCTTCCGTTCAAGCCAAGGTGGTAACCAGGGCCTTTACAAGATCCAGCCCTTCCTGGATTCACTGCAGCAGAGCTTCAGCTGTGCCTTCCGGCCCTCACAAACACAGGTTCTGCATGAGCCCCTGATCGATGAGGACCCTGTGTTCATCACCACATGCACGGAGAGGGAGCTGCgcaagaggaagaagaggaagttCAGCCTGTGGGTGCGACAGTGCAGCTCCACTGGCTTCATCTGTCAGATTTATGTACATCTGAAGGAGGGCTCCGGTCCAGATGGACTCGACACATTGAAAAACAAACCGCAGCTCCACAGTCTGGTGGCCAGGCAGCTCTGTCAGAACCTGTCTGGACGTAACGCCATCATTTTCACCGGCCCCAGCATCACCAGTCTCAGCCTGTTCCAGGAGTTTGAGAATCAGGATATCTACTGCTGTGGGCTGCTAAGCACCAGGAAGAGTGACTGCACCGGTCTGCCTGCATCTATGCTGCGTAACCCTGAGGGCCCTCAGCAGCGCGGCCAGTCCCACATCAAGATGAAGGGGAACATGTCACTCATCAGCTGGTACAACAAGGGCAACTTCCGATTCCTCTCCAACGCCTACTCACCCATCAAGCAAGGTGTGATCATTAAGAGGAAGAGTGGAGAAATCCCATGTCCTCTGGCTGTGGAAGCTTTCGCTGCACACCTGAGCTACATCTGCAAATATGATGACAAGTACAGCAAGTACTTCATTTTCCACAAACCCAACAAGACGTGGCAGCAGGTCTTCTGGCTCACCATCAGTATCGCCATCAACAACGCCTACATCCTCTACAAGATGTCTGACGCCTATCATGTTAAACGCTACAGCCGTGCCCAGTTCGGCGAGAGGCTCGTCAAGGAGCTACTGGACTTGGACGACTGCTCACCTACAGAGTGAAGTGACCGCgtgctgtctaacacacacccacacacacccacacatagaCAGTGACAGCTACCAAACTGGGGCTGTCATTATTTACGACGATGACGTCTCCACACCTTCTATCTGTGACAAATCAAAGCCGTGCCAAGTGTATTTAAAATCAGCAGCCCTCACAGTCTCTCCATGATAAGCCTCCCTCCTACTGTACACCACAGGACCCTGTATATAAGCCATCCGACTGTCTGTGTGTCCTTCTGCTGCATGATGAATGTGAGTGTACGACCCTGtaaatgtgtgatgatttttATGACATAGTGTTTGTGTAGTTTGAACCCTGTGGTAAACCATTCTGTGGATTTGCTCCTGTACGTCGCAAGaacaatgaaaaaacaaaattacacacaGCGATGAACAGTCCTAAGTGGAAATGAAGAATGTAGTGTCATTTTTACGTTCATTCAAACGGAAGCTTCAAAGTCTTCCAAaatttgttgtcattttttaatagaGCTTAACTTTGCTgttacagttgagtgcaaaagtttgtatacccTTAGGACAACTTGAAGATGATTTATAGCAGCAAGACAGTGAGTGTATCATTGACGTGTTTTCTCAGAgtgaaaaaaaggcaaatagtGTATGCTCAGATATtagtattgtaaaaaaaaaaaaaaagttaaaaaaatctctcttcCTAATAACTTGTATCTCCACCCTTTACCTTTATAGCTGCCTCCAATCTCTTCCATGTGCTCTGAACAGCTTTTGGAATAGCCctgattttaatatttgtctCCCCACAGTCTTCCTGCCATGTCTCTGTTCTATCTCTGCTGGATTAATTGGCCATTCTTTTGACATATCTATTAAAATTCTGTCAGATATCACAGCCTTTATTTAAATCAGGTCTGTAGACTGAGAGGGTCATGCCAAAACTTCCTTTCAAACcattttctcttaatttttAACTTAATGGTATTATAATTCCtgtacataaatttaaaatgtgcagaggtgccaacatttataGTCAAGCCAtagcatttacttttttttttacccttggGCAGGACTGTGATCTCTTTGGTCATTAAGAAAAGGAGTAGGTGCTTATTGCTTGGAAAAAACGATCTGCCTCGTCCACTGGTATACGcacagattgttttttttcctctacctGCTGGGATTTCCTTAatagcaatgttggcacctccGAGTAAATTTTTTAACATACCCAGAAACCAGTGGGGTATAAAAACTTTTGCATTTAACTGTACCTAATATTTATTCCAGCGAAGGTCTTTCATGATTCAGCCTGATTTAAAATATTGCCACACGTgagtgaaatataaaaaaacatgcactttcCCTTTCGATTTTTGCACTTTGGATTCCAAGGGAAATGTATAAAACAGACCAAAATGACATGACGACTCCAAATAAATGTGTAACCAAATTTGCCACATCCACAAAGAGGAATATGAGTTTATGTGGATTTTCTGAGGCCTGAGGATGAGAAGTGTGTGCTCTTCATtccattatcattatcatcccATTACTATTCATGCTTTGAGAAATTTTAATGCAGGAgcaaatgagtgtaaatgagaCGAACACAGCTTGTAAATAGATTTCATTGTGTGTATCAGGCTAGGCTTGGTGTAAATGTGATGTTAGGCTGAGTGAGGTTATCAGGAGACTGAGTCCTGCCTGTCATCTGACTGCCTTGTGAAAATGACCGAGGAAGATGGTAAAGGTTACGAAATGGCAACGAGATGCTTCTTACATTTCAAAATGACTCATTTAATCAATCACTTCAGGTTGTCTAAGCTGCCCTGTCCTACACTTCAGCCACTGATGAAATGTTCTGGCAGGAATGTGGCTAAATCTTTATTTGAAAACTCTATCAGGACTCAAAAATCACAGATGACGTTTTCATAGTGGTTAGGGAACGTGAAACAAAATCTGAAGAGTTTTCAGTGACGCTTTACTGGAAGGCTATCTATGTCATAGGAGTGGACAAGTCAGTAGaccaggacaagcagatttcaccaccggacttttttttttgttgttgtaaatTATAGTTGCTTGTTAGACAAGATACCATGTTCTGCAATAGTTTTCATTTGgtgtatgtttaaaatgaatgcaCTTCATGGTGGTGCAATGCACCTTGATACTCTAACTACAGTGTGCACTTCTGAATCCCGCCACCTGCCGCACTAAACACATTGGCCACGGCACAGTGTGGTTGATGGATAAAGTTTTTAATAGGCAGATTAGTTAGTGTGCATGAATgacagatgatcttttcagaatcagaaacataCAGGTGTTGAAACTGATGCTCGATTAATATTTTCCGTGAGATGCAATGACAGAACACAACAGCTAATAGCCGAAAAGTTCACCAAACACaatcaaatattcattcattttccttagtcggtattaatgcacttaactagctaactagcttgccatACATCATTAAATTATGTAAGTTAAACATTGCTCATCTGGCCAACAGTTTTTCATATATACTGGTGCATTTTTCTAGAAATTTTATTCAGCAGTTATGTACGCCATGAAATAAGCATTATGCTCATGGCCTTCAGACAAAGTATTACTGAAGATTCACTGGAGTGAAAAACTAAAAGCAATCTTGTACACTTGTAGTTTTGCTTGTAGTTTCTTCCATATCACTGTGCGATGGCCACATATGACACTGACCCCCTGACTGTGTCAGATGGATGCCAAAGGATTGATGATGCACTTAAATTGTTGGCAAATAAGTAATAAGTGGGGAAGGCAGCAAATTTGTCTAAATACAAGAGAGCAGCTCTATCACACTCTACTGCTCTTGAAGATATGGACTCAAAACTCACTGAAGCCATGTCAACTCACTTCTCAGCTGTTTTCCACTTTGGTTTCCCTGGACCTGTTAACTGCATCACTGCTTTATTGCTGCCATCGCCTGCTCTTCAGTCCCGTGTTTTCAATAGTGAGGAAATGAAACAGCATGCTGAAAAGGGGCAGTTAAACATGGTGCATGCTCTCTTTATGGTCAGTCTGTACAAAGTAGGATGATATACGGtgtatattaaacatattttctatctgtatatttttgttgaaggcaaaatgattgtttaatctttttctaaatgtcttttttaataTACTGTTAATGTGATCAGTAGTAGAGGTGtgcacaggactgtttttttattcccaATTCTGCCCAAGGAATTTTGGCTAATCCtgtcctgaaggaattctgacccaTCCTgcctgctcctgaaggaattctgatcTATCCCGCCCGTTCtcgaaggaattctgaccaatcccgcccGTTcccgaaggaattctgaccaatctaTCTCGCGCCCGAAAGAATTCCAACCCATCCCACCTGCTCCCAAAAGAATTCTTACACACCCCACCCACTGCCGAAGGCATTCTGACCCATTTCAGCCATTCCCAAAGGAATTCAGACCAATCCCACCCgctcccaaaggaattcctGCTCACtcacaaaggaattctgaccaatcccacccactcccaaaAGAAGTGacacaccccacacactgtAGAAGGAATTCTGAACCCTCCACTCTGCTACAGAAGGAATTTGGACCAATCCCACCTACTCCTGAAAGAATTCCTGCTCACTCCctaaggaattctgaccaatcccacccacccCACTCGCTGCAGAAGGAATTCTGACCCCTCCAACCTGCTAccgaaggaattctgaccaatcccgcctGCTCCCAAAGTAATTCTGTCCATACTCGCCCACTCCTGAAGGATTTTTGACTGATACCACCCACTCCCAAGAGAACTGAAAGACCCCTCCATCTTGTCCCAAAAGAATTCGGGCCCATCCTGTCTAATGCCAAAGGAATTCTGAACAATTCCACCCACTCCCATAGGAATACTGTCCGATCCCACACCCTCCAAAAGAAATTGCGATTGATTCTGCCCCCTCCACAAGGAATTCTGAACAATTCCACCAACTcccaaaaaaattgtaattgatCCTGCCCCAGGAATTCTGACCAAGCTTACCCATTCCAGTCCTGTTCTAGTGCAAGCAGTCCCGTTGTGTCCAACACACTCATGTTAATGACCATGGCCTTTCTCTGTCTTGTGAGCATCATTTCAGACcgcttgcattttttttttgttgggtcTCATTGGATCCtggtcctgatgcacacctctaatcatgagtgctttattaatattattacattgtatatattttaagatCTTAGAGGAATTGGAAGGTTCTATGTTTTTACCCAATTAGTTATACATGTGTTATTGGCCTGCCAATGAATCCATGTTGAAAAGTTTTATACCAGAATTAACTGCTTTAATTTGGAATTTgtgaattatattattatgcCCTTGATATGTTAAGTAACAGAATTGTCAGATAGCACCTTATAATTCTAAGGTCTTGTTTGTTTCTATTCCTTGTCCTCATTTTAAATACTTCAGGTGATAGCTTTTGTTTCACTTTATTGCAATGTTTTTGTATTGCTGACCAACTGCATTGCCAACCGTCTAATACATAGATAACTACCACTAATGCTTATTTGCTGTGATGCAACATATGATCtgaatacatgaatgaatggcTTTATGGCATTAGTACCACACTTCCTCTCGCGATACTGTTCAGACAGAGGCTTGGAGGAAGAGAATGGACTCCACTGGTAGGACATTATGATGAGTCTGATGTAAATCTCAggactcctctgtccttgtgagAGCTTAGTCTTGAGAAACCTCAGGGTTTTATAACTACAGTGATGTACTGCAATGCAATAGGTTATAAACTGGAGGAGGAGAATAGTAAACACTGCTTGGGGTGCTTTTAAAACCATGCTTACAGCTGGTTAAAACTCTtaggatttaaaaatatagcTTGATAAAACCTGTACCTATGAAGTCAGACCTTGTCCTCATAGGCTGCTAATTACCTGTGGCATATGATATAGACATATGTGCAGTTGACTGGCATCAAAGCTGAGCATCTGCAGTATGTGAGGAGGAAACCATCTGTacacaattatttaattattatttgttaataattaagACCTGATCATTTACATTGGACCAAATGTCAAAACATGATAAAGAACAATTTAATATTGTACATAATCTCTATCTATGAAGTTCCACAGCAGTGAATGACTgtagtgagtgtagtgtgtgttgctgtaaaACTCTTTGTGTGTCTTCCCATTGTAAATGTTGATGAAGATCCTGTGTGcaaatgttctgtgtatttttcaccCACGACTGCAACACTCCTGTCTGAGCTTTCCTTCACCCTTTTCTCTTCACCTTTGTCAGTGTAACTTTACACCAATTTGCACACAAATAAACGGACAtggctctctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50882 lncRNA downstream 80351 9016202 ~ 9017636 (-) True G43029
TU50844 lncRNA downstream 236479 8857258 ~ 8861508 (-) True G42994
TU50831 lncRNA downstream 328801 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 343091 8754151 ~ 8754896 (-) True G42970
TU50741 lncRNA downstream 546632 8551130 ~ 8551355 (-) True G42914
TU51072 lncRNA upstream 188370 9317428 ~ 9341922 (-) True G43198
TU51168 lncRNA upstream 253650 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 387653 9516711 ~ 9517005 (-) True G43352
TU51431 lncRNA upstream 399458 9528516 ~ 9528727 (-) True G43509
TU51505 lncRNA upstream 630418 9759476 ~ 9760212 (-) True G43569
XM_026934827.2 mRNA downstream 145239 8946682 ~ 8952748 (-) True LOC113539201
XM_034303001.1 mRNA downstream 171650 8909505 ~ 8926337 (-) False cabp2a
XM_034303000.1 mRNA downstream 171684 8909505 ~ 8926303 (-) True cabp2a
XM_034302998.1 mRNA downstream 172792 8909505 ~ 8925195 (-) False cabp2a
XM_026934839.2 mRNA downstream 204214 8868643 ~ 8893773 (-) False ctnnd1
XM_026942296.2 mRNA upstream 15197 9144255 ~ 9148708 (-) True agt
XM_026933661.2 mRNA upstream 95818 9224876 ~ 9228793 (-) False sf3b5
XM_026932135.2 mRNA upstream 115483 9244541 ~ 9268345 (-) True oprm1
XM_026944059.2 mRNA upstream 221002 9350060 ~ 9379729 (-) True pcnx2
XM_034303158.1 mRNA upstream 280012 9409070 ~ 9458592 (-) False il22ra2
TU50809 other downstream 244193 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 244193 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 314189 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 627558 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 627930 8469986 ~ 8470057 (-) True trnam-cau_4
TU51003 other upstream 95823 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 2579556 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 3015837 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3395578 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3402385 12531443 ~ 12534075 (-) False LOC113537616

Expression Profile