RNA id: XM_034302970.1


Basic Information

Item Value
RNA id XM_034302970.1
length 4444
RNA type mRNA
GC content 0.46
exon number 7
gene id trim8a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20427871 ~ 20442232 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAAGGAAAGGAGGGGGTGTAAATGTGAACTGTATCCTGAGTTGCAGTCCTGTGCCTGCATTCCTCTCATCAAGGATTTGcttgaaagaagaaaaaaaaaatcataaataataacatgaaCACAGACTGGAATACGGCGGAAATCCACTGGATTGCTTATGGACTACCACTTTAAAGGCTGATTCTGCTGTTTGCAGCCCATCGCTCAGTCAGTGGGGTATTTCTGGTTTGGACGGCTACAGCTTAATAAAGGAGTATACACACATatgagaagaaaaataaacagatacgCCGCTTTAAATGCGCTTTAAAAGCAGGAAAACAAAGATGGCTGGTGACAGTAAACGATAACAAGGGCAAAACGCTATTGTCCCCTTTAAGAACAAGAACTGTATCTGtctaaaatacataaatatttaagcGAGATAGCTTGAACAAATAGTGCTTGACGTGACGCTGTTCGCTGTTTTGAAGTAAAATGATCGCGAGACGAAGCTATCAGCTGCGAGCAGGTAAACACTGGGACTGAACATGGAAAGGCAGGACATCTCGGAAAAGCCTTTAACATTTAACGACTGTAGATAGCAAGAGAATAGCTTTACAGAGGCTAGAGCGGAGTTTGATCAAGagatttgcgtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgagagagagagagcgcgcacGAGCTCTGTGGAGATGTTTCATAACGCACATTAATGTTCTTAGAcggtgtttttgttgttgtttttgttttgctgtacaTTGTAAGGTTACGGGACACggaggcgttttttttttttttttttctcatttcaccGCCCGACTTGctcaaaatcacacacacacacaggataccCACACGACTACTACTACATTTGACAGAGttagattaaaaacacacacacacacacttctctgctTCTcgtactgatttttttaaactatttgtCAGCACCTTGCGCGCGCCACTCACACTGTAGAGGCCTGTTCTGCTGCCAAGGACAGAGGCGTCTCGTATTGGAGAGCTAGGACTCCGGGTTGGTTTGTTAGAAACCCCTGCAGGTTTTCAGTAACATGCCCGTCGCGATCCGATTGCAACACTCGGGCAGATCCCTGATTTCTGGCTCAGCTGCGGAATTTGATTGCTGACAAGTTGAACAGGGGCGGAATCGAGGCGCTCCCTGGCCCGTGCATGGAGACTTATCAACAGCTGTTCATGCACACTTGTACGCCTGTGTGGACAAGCACAGTCACacgcttcttcttcttcttcttctaagaGGAACACGAGAATGACTGAAACGGCGCGCCGGCTTACTGGCGACTTGTTTTAGACAGTTTTATTAGGCTCGAACTTCAAACTGGCCTGCATGTCTTCTGGCCAGGCAGCTGAGATGGCCGAGGCCTGGAAGAACTGTTTCGAGGAGGAGCTCATCTGCCCCATATGTCTGCATGTGTTCGTGGATCCTGTGCAGCTGCCGTGCAAACACAACTTCTGCCACGGCTGCATTAGCGAGGCCTGGGCCAAAGACGTGGGCATTCTGCGGTGTCCGGAGTGCAATCAGCCGTACAAACAGAAGCCCAGCCTCGACAAGAACATCAAGCTAATCAATATCGTGGAGAAGTTCAACGCCCTGAACACTGAGAAGGAACCGGCTGTACTGCAGTGCATCCTGTGCAGACGGGGACCCGCGCTTCCGGCGCTGAAAGTTTGCCTGCGCTGCAACGCGCCCTGCTGCCAGTCGCACATTCAAACACACCTTCAGCAACCTTCTTCAAATGCCGGGCATCTGCTGGTGGATGTTGAAGACGTGCGAGCCTGGAGCTGCCCCCAGCATGATGAATACAGACTGTATCACTGCGAGACCGAGCAGGTGGCCGTGTGTCGGTACTGCTGCTTCTCCAGATGTGCAGTCGGCCATGGACATGGAGTCTGCGACGTGGAGCTGCGTCAGAATGATATAAGGCACATGCTGATGAAGCAGCAGGATCGCATCGATGATCGAGTGCAGGACATCGAAGAGCTGTTGTACAAGCTGGAGTCAGACAAACGGCAGGTGGAGgATAAGGTGACTCAGCTGAAACAAGAGGTGCGCCTACAATATCAGAAAATGCAACAGCTCCTAGAGGAGGACCTGGGGAAGGCTCTGAATGTGCTAGAGAAGTCACGATCGAAGTTCTGCCAGGAAAACTCCAGACAGGTCCTGCAGCTCAATGAGCGGCGCCAGGAGGCCAAGAAGATGCTCAGCTCTGTCCAGGTCTTGTTTGACAAGGCAGAGAATATCAACTTCATGAAGAACACAAAACCTGTAAAAATCCTCCTGGATAGATCTCAGACATCTATAGACAGTGCACTACCTCCCTACAATGCAGGTCACCTTAACTCTAAAGTCTTTCTCGCTGAGATTTCTAAAAAGGAGAAGAACCTACGCAAAATTCTGGAAGCACCCTTCGCCGCTCCTGCGCACTTTTTCCAGAGTGTTCCTGTCTACCAATGCAGAGTGAGCAGCTCAGGATCAGAAAAGCGCAAACACTCGACTGCATTCCCTGAGAGCAGCGCGAACTTCATGGAATCCTCGTCAGGTCCTGTGAACAAGCAGCAGTTCCTGGCTCCAGGTACTAGCTCCGATGAAGGGCCATCTGTGGCCTCCTGCAGCTCTGCTCGACACATTGTGAGCCTCAACAGCGGCGGCACAGAAGTGAGTGATGCTCAGCCTGTCCATCATTCCAGCTCAGTGTTCAGTCCCGCCCACTACCCCAATGCTGGCTCCACCCAGCAGGCTATGCTGCCACAATACAATGGCCGTAAGATCCTCATGTGTACAGTGGACAACTGCTACTGCTCCAGCATGCCCTCTGTGTCCGGACACCATGGCCACCCTTCCTACTCGCGCTCACCCTCTTTCGCCTGGGCGCAGGAGTTCTCTCACCCAATGCCCCCGCCAGCTCCCTCCATGTCCCAGCCAATGCAGAACATCTCAGTGCGCGGCAACTGGATTGGCACCTCACAGAGCCACAGGCACCCCGACTTCTACAGCCTCTATGGAGAACCTTCTACTAAACACTATGTCACCAGTTAaccttcttttttccatttcttctttctttctattgcttcttttcttttgctttctctctctttattttgtcTCAAGTAATACAACCATTGCATTCAAATGGCACTTTGTCTCATCAACCACATATCTTCCTTCTCATGTCTATAAAATCCCGGTCTGCCACTGtgcagtctttttttaaaaatggaatttgtggctgtgcttttaaaattgaaaacagGCCTTGGATAATTGCAGATGCTGCTGACCCGGAGCAGATAATATTAGGCTTTGCGCAGGGCCAGCTTCAAACCTTTCCTCTGCCCCATCTTCCAGCCTTTAGGGTGTCTGGGGCAGAGGAGGAGGCctctttatattataaatttggTCTGTTATTCACTATGTAACTGGGGGAAACAGCTTGTTTACTGCATCTGTATGATGCCTAAACTTCCTTTTATATAGAAATGAATGGTTGGTAGGGAAAGGGTTGCTGGTTATTATAGGAAAGGTGGGTAAAAAGATTAAGTATGCATCTGTTTTCATTACTCACTTCAACCACATCATGACTGTTGCTGGTTGCCCAGGGTCTAAACCATGTGTAACATGGGGCGAGCTGGGACTGAGCTCTTATGTAAATGCCTAAAAGGCGACAAGATCTAGTATcatgtttacagttacatattagtattttttatgATTTGACTGGCAGTAGAAAACTGTGTCTTAATTCTGTTTAGGAAGAATCACCCCGAAGGAAGCATAATTTCAAACTCAAATATCAGTTATAATCCTGGAAGGCTCCAGGAGCACCTCTTACATGTTCCACATGTCTTTCCTAGACTTCTCTGAAACTTGATATTTACTGCACCTGAACTAATCTTTCCTGGATTCTGCTTTCTGTTGGGTATGGTAACTTCCTGAATCAAAGCACATGAAAGGCATGTTCACGACGATCAGCAAACACACTCAATATTTAATCGTAGCTCAATTATATAGATGTGATATTCTTcctctttaaaaatgttgtcAGCTCCAGTGGAACCCAGTGGGTTTGTGTGATCACTGCACAGTGCTGATTGTCAGGAACATGCTAAAAATCTTTTGACTTCCTGTTTGGGACTTTAAGCAGTACGAAAAGATTTTTCCATGAACTCCAAGGGTCTATGCTGAGCCTGAATAGAAAACGGttattgacatttttttccacatattttttACAAGAATATAATGGACTACTGAACCTCTATAATTTGCTTCATTGTGCTTCAAAAGAGTATTAAATGTTGGTtttaaaacacatacagtacagtctttttgtacatattttgtgCAACACAAAAGTGTGGCtctaatctaaaaaaataaacggCAGTTAATGGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12001 TRIM8; tripartite motif-containing protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58921 lncRNA downstream 67420 20297118 ~ 20360451 (-) True G49797
XR_003403784.2 lncRNA downstream 76395 20349410 ~ 20351476 (-) True LOC113537651
TU58849 lncRNA downstream 200292 20224966 ~ 20227579 (-) False atp10d
TU58804 lncRNA downstream 211441 20215653 ~ 20216430 (-) True G49700
TU58755 lncRNA downstream 222278 20182053 ~ 20205593 (-) False metap1
TU58937 lncRNA upstream 21661 20463893 ~ 20464950 (-) True G49806
TU58979 lncRNA upstream 30245 20472477 ~ 20473295 (-) True G49836
TU58984 lncRNA upstream 35476 20477708 ~ 20478688 (-) True G49841
TU59102 lncRNA upstream 57301 20499533 ~ 20500791 (-) True G49941
TU59106 lncRNA upstream 58564 20500796 ~ 20502665 (-) True G49942
XM_026941752.2 mRNA downstream 58426 20357970 ~ 20369445 (-) True gng2
XM_026941743.2 mRNA downstream 58759 20357970 ~ 20369112 (-) False gng2
XM_026932247.2 mRNA downstream 84369 20327905 ~ 20343502 (-) True gabra2a
XM_026936680.2 mRNA downstream 110702 20309844 ~ 20317169 (-) True gabrg1
XM_034302742.1 mRNA downstream 148829 20263949 ~ 20279042 (-) False gabrb1
XM_026937086.2 mRNA upstream 3188 20445420 ~ 20461102 (-) False sufu
XM_026937100.2 mRNA upstream 3188 20445420 ~ 20461101 (-) False sufu
XM_026937093.2 mRNA upstream 3188 20445420 ~ 20461101 (-) False sufu
XM_026937079.2 mRNA upstream 3188 20445420 ~ 20461101 (-) True sufu
XM_026937107.2 mRNA upstream 3188 20445420 ~ 20460813 (-) False sufu
TU58946 other downstream 58442 20357988 ~ 20369429 (-) False gng2
TU58944 other downstream 58774 20357934 ~ 20369097 (-) False gng2
TU58943 other downstream 58774 20357988 ~ 20369097 (-) False gng2
XR_004577815.1 other downstream 760210 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 1108138 19316487 ~ 19319733 (-) True G49195
TU59887 other upstream 1169542 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1453952 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 1507623 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 1593053 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 2332123 22774355 ~ 22788783 (-) False znf318

Expression Profile