RNA id: XM_026940869.2


Basic Information

Item Value
RNA id XM_026940869.2
length 6676
RNA type mRNA
GC content 0.45
exon number 15
gene id unc5b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15259363 ~ 15322047 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggtgtttttttttccctctccagTGGTATATTGCTGAACCTGTTTGGTCTGGTTTGTGGAGgaaaatggacgaattcttgtGAAGTTTGAAACCTGTCGAACTTTACGCACGCCCTTGGCTGCTGAACATCCTGGTCAGTGGAACTTCACTGTTCGACTGTTTGTCAAAGTTTGAGGACACGGACTGATTTTGCGGCTGCGGAAGATCATCCTCGCACACTTTCTGAGGAAATATCGCTCCCCTGAGCAGCAGCTCGACCACAGAAGAGACTTTTCAGATCGAGAGCGCCGCGTCCGTTTGGCGTTAGCTGAGGAAGATGCCGTGTGTCCGGCGCGAGCGCGCACGAGCTCCCGGCCCGCTGCTCGCGCTGCTGTTCCTCGGCGGCACCTTCGTGTGCAATGCAGatggcaGTGACTACAGTGAAGTTCTGCCAGACTCCTTCCCTTCTGCACCAGCTGAGCCTCTGCCTGAGTTCCAGAGCGAGCCGGAGGACACGTTCATCGTGAAGAACAGACCAGTGAAACTCTCCTGCAAAGCGTCTCCCGCCACCCAGATCTACTTCAAATGCAACGGCGAGTGGGTCAACCAGAACGACCACGTCACCAGAGAGAGCTTGGATCAGGTCACAGGTCTGGTGGTGCGTGAGGTAGACATCTCAGTGTCCAGGGTTCAGGTTGAGGAGCTCTTTGGCTTGGAAGATTACTGGTGCCAGTGTGTAGCCTGGAGCTCAGCGGGTACCACCAAGAGCCGGCGCGCATATGTTCGCATCGCATACCTCAGGAAAAACTTTGAGCAGGAGCCACTCGGCAGGGAGGTGCGTCTGGAACAGGAAGTTCTGCTGCAGTGCCGCCCACCAGAAGGGATCCCACCTGCTGAGGTAGAATGGCTGAAGAATGAGGAGCTCGTTGATCCTGTGCAGGACTCCAACTTCCTTATAACCATTGACCATGACCTCATCATCAAGCAGGCACGTCTTTCTGACACAGCTAACTACACATGTGTGGCCCGAAATGTGGTTGCCAAGCGACGCAGCAGCACTGCTACACTCATCGTCTATGTGGATGGAGGCTGGACAGAGTGGGCTAAATGGTCAGCGTGTGGGACCGAGTGCACACACTGGCGTAGCCGTGAGTGCCAGGCTCCTCCACCACGTAACGGAGGACGCCACTGCAGCGGCAGCATGATGGAGAGCAAGAACTGCACCGAGGGACTGTGTGCCCACTATAAAAAGGTTTCTGTTGAACATACAAACCATCtggatTCAGGGGCAGGAGTGGCTATGTATGCAAGGCTGGTGGGGGCTCTGTTGTTGTGTGTAATCCTTGTGCTCATTGTGGGCATCCTGGCTTACCGCTGTAGCTGTCGCCATTTCCACGGAGATATCACTGACTCCTCATCTGCCCTTGCTGCTGCCTTCCATCCTGGCAAACCGCCAAGACAAGATAACCTTCATGTGCTGCACTCCTCAGCTCCCCCCGACCTCACTGCTAGCGCTGGAACATTCCGGGGGCAGATCTTCTCCTCGCTGCAACAGAGCACACTTGACTCGCACCACAAGATCCCCATGACCAACTCACCTCTGCTAGATGCTCTGCCCAGCCTCAAGATTAAAGTTTATGACTCCTCTACCATGTCATCGCTGGAGCTGCCCACCAGCCTGGGATGTGAAGAAGACATCATGAGCTTGAAGACGATGGGCAGCGGTGCACGAGAgcctcgcacacacactctgcctgCTGAACCGGGCCACAGCACCAGTGCCACGTTAGGCAGCCTCGGCGGGCGCCTGACCATCCCTAACACAGgTGTGAGCCTACTGGTGCCGCCAGGAACCATTCCTCAGGGGAAATTCTATGAAATGTATCTCATCATCAACAAATGGGAGAAGACTACGTTGCCATCGGAGGGTGGTCAGACAGTGCTGAGTCCGGTGGTGAGCTGTGGGCCCTCAGCCATGCTGCTAAGCCGCCCAGTCATCCTCACCCTGCCCCACTGCGCCCACCTCGAGACTCCCAACTGGAGCCTCACCCTTAAAACGCAGAGCAACCAAGGAGTCTGGGAGGAGGTGCTGACTGTAGGAGAGGAGAGTTTGTCCTCGCCGTGTTACATGCAGCTGGAGGAGCAGAGCTGCCACATTCTGATGGAGCACTTAGGCACCTACGGTCTGGTGGGACAGTCAGTTCCTCCTCAGCCTGCTTGTAAGAGGCTACAGCTTGCCCTGTTTGCTCCCCGAGCTCCTTGCCTCTCTCTGGATTACAGTCTGAGGGTCTACTGCATACAAGACACGCCCTATGCCCTAAAGGAAGTGTTAGAATTAGAGCGAACACTTGGTGGGGTATTATTGGAGGATCCCAAGTCACTCCTCTTTAAGGACAGTTACAACAACCTACGACTGTCAATCCATGACATCCCGCACTCTCATTGGAGGAGCAAACTTCTTGCCAAGTATCAGGAgatcccattctaccacatctgGAATGGGAGCCAGCGGCCCCTGCACTGCACCTTTAGCCTGGAGAGAGGCAGCCTGGCCGTGTCCCAGCTCAGCTGTAAAATCTGTGTGAGGCAGGTGGAAGGGGAGGGACAGATATTCCAGCTCTACACAGACATCCAGGAGGTACAGACACTGTGGAAAGGGTTTGATTGCAGCACAAGTGCAATTGCTGCTCAACTGAATTGCTCCAAACTGCTTATTTGGATGAAACAtttatgtgtgtgcttgtttgcGCTTGTGTGTCAGACATTGCCCCCCCATTCACCGCTGCCTGCAGCAGGAACAAGCCTGCCGTCATCTCAGGTGGGTCCTTATGCCTTCCGCCTGCCAGCCTCCATCCGCCAAAAGATCTGTGCCAGTCTTGATGCCCCCAGTGCCCGCGGCTGTGACTGGAGACTGCTTGCACACAGCCTGGGCTTTGACAGGTACCTGAACTACTTTGCCACCAAGCCAAGTCCCACAGGTGTGCTGCTCGACCTGTGGGAAGCCTGTCACCACGGTGATGCCGACCTGGTCTCCCTGGCGACTGCTCTGGAAGAGATGGGCAAGAGTGAGGTCTTAGTTGTCATGACGACAGATGAGGACTGCTGATTGGGTAATCAAACCCcgtaaaaaggaaagaaatgtgCCACCATGAATAAAGCAATCATTAATGCCAGTGGATGGGCATAAAGATGTGACCACACACCCTGACTCGTCACTGTGTGTGCACACAGAAGATACAGAGCTGCAAGCCGCTGGCTCCATGATCTCTCAGTTTTACACACagtactgcactcagtcacaaCGGacatgaaccaaaaaaaaaaaaagtgatgtcaTTTGaatgagaacattttttaatcttaatgCAGGTAGCAGGTTTAAATCTTGGCCTGTCTGCATAAATCATATGTACAAGCTCATGATTCAAAGATGCTTTTTGCCCTCTCAGACGTGAATAATTTTTCATCtaaacacaggcacacacactcagactacATGCTGGAAGCCAAGTGTGAAAGTGCATGATTAAGCATCACTTTAGGTCGTGATTGAGCTTTTGTTTCTTAGTGATTATTGGAGGCTTAAAGTCACCATCAAATAGACTCTGGAGTGAAGCACTTTCTCTagctgctgacacacacacacacacacacacagatgtccTTACACAGAATAGAGTGTTGATAATAGAGCATGCAAGCAGCCAAATTAATGAGACATAGACTCAGAAACAGCAGTACTGCAATAGTTATTAGTAttgccattttcatttacaaCATAATGAGAATAGTCTGTAGTGAACCTGACACTGCATTTCACCTGTTTAGCAAAATTTTTGACATGTTTATGATTAGCAAAAAGAAACAGGGAGCCTTTGTTGTTGCAAGAAAGTAGGGATGTACAGATTACACGTTTCCCATTTCCAATACAACAAGTATTGCGTGATATCTCCTGATACCTGTTACTGATTCAGTACTGACATCCTCACAGGAACCAAGCCAAATTTCTGCCAGCTGCTGTTGCCTAGTTATGCAAAATATCAGAGATATGATGGTGCCGTGTTCAAGTCAACGTCACTCACCTTCATGACAAAACACGTCAGAGGATCAGATGTCAAATCAGATCATTTTCAGGCGAGTGTCAGTGCATCTCTAGAGGAAAGCTTTTATGAACTGCATTTCCGTTTTACTTTATTCTAGTCATCTTGGTtgcttttaatgaaattttctcTTCAACACATCATGAAATGCAGAAGAGCTATCACACAAAAAGTTTCCTATAGGGaacacactttttaatttactgtCCATATTAGTGGATTATTGTTTCATTCTTTCTTGTTGTATCTGCTGTAATGTTATTGAGTAGAACGTCTACATCTGTGCTTGACTGCTGTTACATTACACAAGCAGGGAGTGGTTAAAAAGTGCTTAAAGGACTTCATGTTATGTGGCAAGCTTTTCTAAATGCTGTGTAATACATCATGAGTGAACTGTCATTTCAGGCATTGAAACAGACATGAAAAATGCGAGCTCTGATTCTGTGATCTTGTGTTTGGGTTCAACTCGAGCCATTAATCACTGCTCAGACTCTAAGGTCAGCCAATTGTAGGCCTTGTGTTAAGTGTCTTTGGAAATGGCATGGCTGCTCTTTGGACTGCATTGTGTCCCATTCACTGTCTTCTCTGACTGTGGGTTGGAAATGTTACTATAGTGTGAGACTAACAGCCATGGCTGTCATGGGCCCTTTACCATTTGTCCATTTTGATGTTGTATCATTAACATATTGTGACCTTAATATTATAAGCTTCAGTCTGGCATTTTGGCAGCAAATGAGTTCAGCACATTAGTTGGAACATAACTTCGCATTTGGTAttattctgtctctttctctgtctcctttttattttacaagCTTTCTGGTTCAATATTTTAAGGAAAGTTGCGTATCTAAAATGAACTTGGAATGAACTTGGATTCTATCACAGCCAGTCATAATTGTAGATGAATTATTAATGAGTCATTTTATCAATTGTAATAAATTGCTAATCAAAATTGCTAGTCCACACAGTTTAATACAGTGAATGAAGCATATTGGTGTTATCAGACATTTCTTGTGGCAtacatgaaaaggaaaaaagcattTAAGTGTTAAAAGCATTTATTAGTGCTAATTTTACTTCCTACTACGAGTGTAGTATAAAAAATCCTTTGTCTTAGCCTAGTGTATTTACAGCTCTAACAATGtgttaaacttaaaaaaaaaagaaaataaaataaaaagcctcAAGCACAGTGGAAAGCTTAGTAATGCTAGTGGTAAATATTAGCCAACACCTACCTACCTccaataatgtgttttttttctgcagtagCTCCGAGTGGAAGCAGGACTAAATATTAGCTAGTTATAGATATATTAAGAAACTATATTACATGGATAATACATGGGGCACCTATTGGTTTCACTGCTTGTAGCTTTATACTTTTCTCAgtaaaatctgtgtttttttttccccagtgtatatttactgtatgaatgacttcatataaaataatttcagaagTGAAATATGAGAAAACATAGCCTATTGAGGTGCAAATACATTGATGTGCCATCTGTGTTTTAAAACGAATTACTGAACTGCAGTGATGTTAATAACTTGATAACCATGTTTCCTACCTGGTCAAATACCCACTTTTTAAATATCTCAGGGTTTTGATAATGTACATGTGAAGCACTTTTAAACTCTACACCCTACTGAAATATAAACATGGATGTCACTCCTGTAGCTTTTGCTAGCTGAAACATCACATCTTTGATGCTTGATGTCAAAAAACTGCTTTTCTGCCAGATAGAACTATATAATTCTAAGGTCACAATatgtcttttaatttttttttacagccatttctttgtaaaagtGTTGAGATATTCTCCAGAAAAAAAGCAGTATCTGTCCATCTTTCTGGAAAAGTAatttttgtggtgtgtgtacaCGTGCTGTTGAATGCGTGCTGGTTGAAGGGCCTCATTTTGTAGCAGTTTCTTTGAactttttatgtaaattctatgCAAGTACAAAATGAGTAAATTTGCAGACCTCCTTAAAGTTTTCTGTTTGATGTGCAGGTGTCAGTTTGGAAATTGTCATGCTGTACTACTGACACATGCTGGAACAGGCCTTAAGGATAAAAAGGTTCTCCAAGGCTCATCAGCAGaaacaaacaatataaaatgactCCAGGAAGTTGGGATTATAACTGGTCTCCATGTGCTCTTTGCTGCTTTTCTGAGCTGTGTGGAGGAATTCTGCCATCAGtagacaaaattaaatattctttCTAAGGAGGAGTAAATTAGGACCTCTACCCATGAAAAGGATTGGCAGTTATGACACTGTAAAGGAAGCTCCTAAGCACATGGATTTGTTTGGGGAAACTTCTTCTAACCTGGACGCAACATTTGGACATCCTTCAGGTGCACGCAGAGACGTGGGACTGCATCTGGTCTCCTCCTCCCGAGAACCACCTCTTTCTGGATGTTGGTTGCTTTTCACAAACCCTGAGTGATTTTGTTCTGATGTCATACCAGAACTCtgaggtctttttttttgtttgtttgtttcatttaaacactgtaaatgtctGTTGTACATAAATGTTTAGCCTTCTTACTGTaactaaatataatt

Function

GO:

id name namespace
GO:0016525 negative regulation of angiogenesis biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55286 lncRNA upstream 175053 15079813 ~ 15084310 (+) True G46765
TU55287 lncRNA upstream 175053 15081653 ~ 15084310 (+) False G46765
TU55220 lncRNA upstream 244182 15014123 ~ 15015181 (+) True G46713
TU55127 lncRNA upstream 247374 14965906 ~ 15011989 (+) False G46638
TU55373 lncRNA downstream 96982 15419029 ~ 15419642 (+) True G46833
TU55393 lncRNA downstream 151154 15473201 ~ 15473870 (+) True G46849
TU55615 lncRNA downstream 389090 15711137 ~ 15715524 (+) True G47043
TU55651 lncRNA downstream 571534 15893581 ~ 15896079 (+) True G47071
TU55664 lncRNA downstream 711257 16033304 ~ 16035339 (+) True G47084
XM_034303147.1 mRNA upstream 99278 15157757 ~ 15160085 (+) True ly6pge
XM_034302965.1 mRNA upstream 102620 15094677 ~ 15156743 (+) False tacc2
XM_034302964.1 mRNA upstream 102620 15094759 ~ 15156743 (+) False tacc2
XM_034302966.1 mRNA upstream 102620 15094759 ~ 15156743 (+) False tacc2
XM_034302968.1 mRNA upstream 118413 15091830 ~ 15140950 (+) False tacc2
XM_034302786.1 mRNA downstream 3185 15325232 ~ 15354413 (+) True myofl
XM_034302787.1 mRNA downstream 3185 15325232 ~ 15354205 (+) False myofl
XM_034302788.1 mRNA downstream 3185 15325232 ~ 15352248 (+) False myofl
XM_026940301.2 mRNA downstream 33770 15355817 ~ 15386394 (+) True parga
XM_026942885.2 mRNA downstream 66449 15388496 ~ 15413390 (+) True ogdhl
XR_004577898.1 other upstream 891917 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 976195 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 1758317 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2226115 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 2259401 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 471381 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 748667 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 748712 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 912488 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 4019303 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile