Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026941145.2 |
| length | 1170 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 7 |
| gene id | asb5b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 3307834 ~ 3325642 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| id | description |
|---|---|
| K10327 | ASB5; ankyrin repeat and SOCS box protein 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46198 | lncRNA | upstream | 876748 | 2427812 ~ 2431087 (+) | True | G38962 |
| TU46183 | lncRNA | upstream | 881235 | 2411201 ~ 2426600 (+) | True | G38948 |
| TU46126 | lncRNA | upstream | 995384 | 2311651 ~ 2312451 (+) | True | G38895 |
| TU46052 | lncRNA | upstream | 1142350 | 2165170 ~ 2165485 (+) | True | G38826 |
| TU46035 | lncRNA | upstream | 1181168 | 2124070 ~ 2126667 (+) | True | G38812 |
| XR_004577844.1 | lncRNA | downstream | 75210 | 3400795 ~ 3403106 (+) | True | LOC117596855 |
| XR_004577906.1 | lncRNA | downstream | 189516 | 3515101 ~ 3525121 (+) | True | LOC117596918 |
| TU47566 | lncRNA | downstream | 189516 | 3515101 ~ 3525093 (+) | False | LOC117596918 |
| TU47719 | lncRNA | downstream | 357758 | 3683343 ~ 3685205 (+) | True | G40287 |
| TU47821 | lncRNA | downstream | 539111 | 3864696 ~ 3865000 (+) | True | G40374 |
| XM_026941131.2 | mRNA | upstream | 1512 | 3296533 ~ 3306323 (+) | True | LOC113543098 |
| XM_026933437.2 | mRNA | upstream | 54472 | 3193301 ~ 3253363 (+) | True | vegfc |
| XM_034302871.1 | mRNA | upstream | 1108300 | 2193949 ~ 2199535 (+) | True | LOC113541301 |
| XM_034302870.1 | mRNA | upstream | 1123187 | 2174587 ~ 2184648 (+) | True | LOC113544637 |
| XM_034302864.1 | mRNA | upstream | 1144143 | 2152579 ~ 2163692 (+) | False | dctd |
| XM_026938964.2 | mRNA | downstream | 25300 | 3350885 ~ 3353178 (+) | True | LOC113541782 |
| XM_026938973.2 | mRNA | downstream | 25300 | 3350885 ~ 3353178 (+) | False | LOC113541782 |
| XM_026938948.2 | mRNA | downstream | 25300 | 3350885 ~ 3353177 (+) | False | LOC113541782 |
| XM_034302843.1 | mRNA | downstream | 30837 | 3356422 ~ 3358975 (+) | True | LOC117596854 |
| XM_034302844.1 | mRNA | downstream | 30978 | 3356563 ~ 3357720 (+) | False | LOC117596854 |
| XR_004577910.1 | other | upstream | 1142051 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45993 | other | upstream | 1216529 | 2085465 ~ 2091306 (+) | False | stox2a |
| TU45995 | other | upstream | 1216614 | 2085465 ~ 2091221 (+) | False | stox2a |
| TU45994 | other | upstream | 1216994 | 2085465 ~ 2090841 (+) | False | stox2a |
| TU45964 | other | upstream | 1310583 | 1983657 ~ 1997252 (+) | False | cdk2ap2 |
| TU47789 | other | downstream | 506364 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_003404319.2 | other | downstream | 1937997 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | downstream | 1992949 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU49753 | other | downstream | 3878365 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 4323613 | 7649198 ~ 7666033 (+) | False | naa15b |
